pycom07g07290

Protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0020437
Physical Location & Seq
Forward (+)
6623402 .. 6623767
366 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07290.1

Sequence Viewer

Length: 366 bp
ATGCCATTTCCCACTTTTTCTTCTGGTCAATGGTGGCATTACATTTTTGGTGGAAGCTGCACTGCCTGGTTTCAGGATGGGTACAACCCAGTGGTGGTTGATATGAAGGGAGACAAGGACAATTCTAGGAGCAATAAGAAGAGAAATCCATTCAGTGCTGATTTTTTCGGCTCTCTCTGCTATACTTTCCAGCACAGGAAACTTATAGAGCTCTACGGTGATCTAACCAGGATTGATTCTCTTCTCGATATTTGTTCAGCTTCAGCTTTGGCTAAAAGGGTTATTTGTGGTTTGAAGAGTTCCTTTGCTAATAGTGCACAAGATCTGGTGTCCTCCCCTAGGATCAATATAATCTTTCAGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3769

Protein Analysis

122

Amino Acids

13.67

Weight (kDa)

8.75

Isoelectric Point (pI)

61.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020437)

Species Orthologous Gene IDs
pyrus_communis pycom07g07170 pycom07g07210 pycom07g07290 pycom07g07370
rosa_chinensis RchiOBHm_Chr1g0344131
rosa_multiflora Rmu_sc0001568.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 94, 339
AgsI TTSAA 1 cut(s) 295
AjnI CCWGG 2 cut(s) 65, 227
AluBI AGCT 4 cut(s) 57, 211, 260, 266
AluI AGCT 4 cut(s) 57, 211, 260, 266
Alw21I GWGCWC 2 cut(s) 213, 319
Alw26I GTCTC 1 cut(s) 105
Alw44I GTGCAC 1 cut(s) 315
AlwI GGATC 1 cut(s) 350
ApaLI GTGCAC 1 cut(s) 315
ApeKI GCWGC 1 cut(s) 57
AspA2I CCTAGG 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 230
AvrII CCTAGG 1 cut(s) 338
BaeGI GKGCMC 1 cut(s) 319
BanII GRGCYC 1 cut(s) 213
Bbv12I GWGCWC 2 cut(s) 213, 319
BbvI GCAGC 1 cut(s) 44
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 67, 229
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 2 cut(s) 126, 339
BglII AGATCT 1 cut(s) 322
BisI GCNGC 1 cut(s) 58
BlnI CCTAGG 1 cut(s) 338
BlsI GCNGC 1 cut(s) 59
Bme1390I CCNGG 2 cut(s) 67, 229
BmrFI CCNGG 2 cut(s) 67, 229
BmrI ACTGGG 1 cut(s) 83
BmuI ACTGGG 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 339
Bse1I ACTGG 1 cut(s) 89
BseBI CCWGG 2 cut(s) 67, 229
BseDI CCNNGG 1 cut(s) 338
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 94, 339
BseNI ACTGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 43
BsiHKAI GWGCWC 2 cut(s) 213, 319
BslI CCNNNNNNNGG 2 cut(s) 94, 339
BsmAI GTCTC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 213, 319
Bsp143I GATC 3 cut(s) 220, 322, 342
BspPI GGATC 1 cut(s) 350
BsrI ACTGG 1 cut(s) 89
BssECI CCNNGG 1 cut(s) 338
BssMI GATC 3 cut(s) 220, 322, 342
BssT1I CCWWGG 1 cut(s) 338
Bst2UI CCWGG 2 cut(s) 67, 229
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 3 cut(s) 134, 246, 290
BstENI CCTNNNNNAGG 1 cut(s) 337
BstF5I GGATG 1 cut(s) 82
BstKTI GATC 3 cut(s) 223, 325, 345
BstMAI GTCTC 1 cut(s) 105
BstMBI GATC 3 cut(s) 220, 322, 342
BstMWI GCNNNNNNNGC 2 cut(s) 177, 314
BstNI CCWGG 2 cut(s) 67, 229
BstSCI CCNGG 2 cut(s) 65, 227
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtsCI GGATG 1 cut(s) 82
BtsI GCAGTG 1 cut(s) 60
BtsIMutI CAGTG 3 cut(s) 60, 96, 160
Csp6I GTAC 1 cut(s) 82
CviJI RGCY 6 cut(s) 57, 171, 211, 260, 266, 272
CviKI_1 RGCY 6 cut(s) 57, 171, 211, 260, 266, 272
CviQI GTAC 1 cut(s) 82
DpnI GATC 3 cut(s) 222, 324, 344
DpnII GATC 3 cut(s) 220, 322, 342
Eam1104I CTCTTC 3 cut(s) 134, 246, 290
EarI CTCTTC 3 cut(s) 134, 246, 290
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 338
Eco24I GRGCYC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 211
EcoNI CCTNNNNNAGG 1 cut(s) 337
EcoRII CCWGG 2 cut(s) 65, 227
EcoT14I CCWWGG 1 cut(s) 338
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 338
FaiI YATR 4 cut(s) 104, 183, 206, 350
FalI AAGNNNNNCTT 2 cut(s) 287, 319
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 1 cut(s) 89
FriOI GRGCYC 1 cut(s) 213
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 2 cut(s) 126, 339
GluI GCNGC 1 cut(s) 58
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 317
Hpy188III TCNNGA 2 cut(s) 74, 245
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 100
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4V TGCA 2 cut(s) 60, 317
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 314
Kzo9I GATC 3 cut(s) 220, 322, 342
LmnI GCTCC 1 cut(s) 129
Lsp1109I GCAGC 1 cut(s) 44
MaeI CTAG 2 cut(s) 126, 339
MalI GATC 3 cut(s) 222, 324, 344
MboI GATC 3 cut(s) 220, 322, 342
MboII GAAGA 4 cut(s) 12, 151, 233, 307
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 2 cut(s) 213, 319
MluCI AATT 1 cut(s) 121
MnlI CCTC 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 67, 229
MvaI CCWGG 2 cut(s) 67, 229
MwoI GCNNNNNNNGC 2 cut(s) 177, 314
NdeII GATC 3 cut(s) 220, 322, 342
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 59
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 2 cut(s) 65, 227
PspGI CCWGG 2 cut(s) 65, 227
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
SacI GAGCTC 1 cut(s) 213
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 3 cut(s) 220, 322, 342
ScrFI CCNGG 2 cut(s) 67, 229
SduI GDGCHC 2 cut(s) 213, 319
SetI ASST 4 cut(s) 59, 213, 262, 268
Sse9I AATT 1 cut(s) 121
SspMI CTAG 2 cut(s) 126, 339
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 2 cut(s) 65, 227
StyI CCWWGG 1 cut(s) 338
TaaI ACNGT 1 cut(s) 218
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 121
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 3 cut(s) 67, 96, 160
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 1 cut(s) 119
TspRI CASTG 3 cut(s) 67, 96, 160
VneI GTGCAC 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 337
XmaJI CCTAGG 1 cut(s) 338
XspI CTAG 2 cut(s) 126, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.