Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0019775

Physical Location & Seq

Genomic Coordinates Reverse (-)

15138595 .. 15139510

Gene Structure 916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGCAAAGCCTTGGGGCAATTGCTGGTGCCGGGGTGGTGAAGGGGTTCCAAAAGAGCCAGTATGAGTTGCTCGGTGGCGGAGCTAATGTGGTGAACCATGGCTACACTAAGGGTGACGGCCTTGGTGCTGAGATTGTTGGCACTTTTGTTCTTGTGTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAATGCCAGAGACTCTCATGTCCCTGTAAGTATAATCACAGATTTCTACGTACGAATGGAAATGCAGATCTTGGCTCCACTACCCATTGGGTTTGCAGTGTTTTTGGTTCATTTGGCAACCATCCCCATCACTGGAACCGGCATAAACCCTGCTAGGAGCCTTGGGGCTGCCATCATCTACAACAAGGACCATGCATGGGATGATCATTGGATCTTCTGGGTTGGACCATTCATCGGAGCTGCACTTGCTGCACTCTACCATCAGATAGTCATCCGAGCCATCCCATTCAAGACCAGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

164

Amino Acids

17.54

Weight (kDa)

8.05

Isoelectric Point (pI)

21.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	1 - 150	1e-41	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019775)

Species	Orthologous Gene IDs
malus_domestica	MD00G1173200.v1.1 MD07G1136400.v1.1
pyrus_communis	pycom07g13370
rosa_chinensis	RchiOBHm_Chr2g0098661
rosa_multiflora	Rmu_co8012854.1_g000001
rosa_samantha	Rh2AG121800 Rh2CG126400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	26
AciI	CCGC	1 cut(s)	78
AclWI	GGATC	1 cut(s)	407
AfaI	GTAC	2 cut(s)	158, 240
AfiI	CCNNNNNNNGG	3 cut(s)	320, 385, 422
AgsI	TTSAA	1 cut(s)	478
AjnI	CCWGG	1 cut(s)	482
AluBI	AGCT	2 cut(s)	83, 428
AluI	AGCT	2 cut(s)	83, 428
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	407
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	3 cut(s)	356, 428, 437
Asp700I	GAANNNNTTC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	376, 413
AsuC2I	CCSGG	1 cut(s)	31
AsuHPI	GGTGA	3 cut(s)	49, 103, 125
AvaII	GGWCC	2 cut(s)	376, 413
BanI	GGYRCC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	343, 415, 424
BccI	CCATC	5 cut(s)	317, 323, 368, 456, 476
BceAI	ACGGC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	484
BclI	TGATCA	1 cut(s)	391
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	342
BglII	AGATCT	1 cut(s)	255
BisI	GCNGC	3 cut(s)	357, 429, 438
BlsI	GCNGC	3 cut(s)	358, 430, 439
Bme1390I	CCNGG	2 cut(s)	31, 484
Bme18I	GGWCC	2 cut(s)	376, 413
BmgT120I	GGNCC	2 cut(s)	376, 413
BmiI	GGNNCC	5 cut(s)	28, 47, 264, 325, 347
BmrFI	CCNGG	2 cut(s)	31, 484
BmsI	GCATC	1 cut(s)	169
BpuMI	CCSGG	1 cut(s)	31
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	458
BsaJI	CCNNGG	6 cut(s)	10, 30, 97, 121, 349, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	72, 102
Bsc4I	CCNNNNNNNGG	3 cut(s)	320, 385, 422
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	58, 325
Bse8I	GATNNNNATC	1 cut(s)	458
BseBI	CCWGG	1 cut(s)	484
BseDI	CCNNGG	6 cut(s)	10, 30, 97, 121, 349, 483
BseGI	GGATG	4 cut(s)	309, 394, 459, 468
BseJI	GATNNNNATC	1 cut(s)	458
BseLI	CCNNNNNNNGG	3 cut(s)	320, 385, 422
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	2 cut(s)	58, 325
BseXI	GCAGC	3 cut(s)	343, 415, 424
BsgI	GTGCAG	2 cut(s)	414, 423
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	26
BsiSI	CCGG	2 cut(s)	30, 327
BsiWI	CGTACG	1 cut(s)	238
BslFI	GGGAC	1 cut(s)	194
BslI	CCNNNNNNNGG	3 cut(s)	320, 385, 422
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	194
BsnI	GGCC	1 cut(s)	120
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	3 cut(s)	255, 391, 399
Bsp19I	CCATGG	1 cut(s)	97
BspACI	CCGC	1 cut(s)	78
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	121
BspLI	GGNNCC	5 cut(s)	28, 47, 264, 325, 347
BspPI	GGATC	1 cut(s)	407
BspT107I	GGYRCC	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	326
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	58, 325
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	6 cut(s)	10, 30, 97, 121, 349, 483
BssMI	GATC	3 cut(s)	255, 391, 399
BssT1I	CCWWGG	4 cut(s)	10, 97, 121, 349
Bst2UI	CCWGG	1 cut(s)	484
Bst4CI	ACNGT	1 cut(s)	163
BstAPI	GCANNNNNTGC	1 cut(s)	437
BstAUI	TGTACA	1 cut(s)	156
BstBAI	YACGTR	1 cut(s)	238
BstDEI	CTNAG	2 cut(s)	108, 129
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	4 cut(s)	309, 394, 459, 468
BstKTI	GATC	3 cut(s)	258, 394, 402
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	255, 391, 399
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 434, 437
BstNI	CCWGG	1 cut(s)	484
BstSCI	CCNGG	2 cut(s)	29, 482
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	343, 415, 424
BstX2I	RGATCY	2 cut(s)	255, 399
BstYI	RGATCY	2 cut(s)	255, 399
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	309, 394, 459, 468
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	4 cut(s)	159, 174, 291, 318
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	376, 413
Csp6I	GTAC	2 cut(s)	157, 239
CviAII	CATG	4 cut(s)	98, 206, 380, 384
CviQI	GTAC	2 cut(s)	157, 239
DdeI	CTNAG	2 cut(s)	108, 129
DpnI	GATC	3 cut(s)	257, 393, 401
DpnII	GATC	3 cut(s)	255, 391, 399
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EciI	GGCGGA	1 cut(s)	93
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	4 cut(s)	10, 97, 121, 349
Eco47I	GGWCC	2 cut(s)	376, 413
EcoRII	CCWGG	1 cut(s)	482
EcoT14I	CCWWGG	4 cut(s)	10, 97, 121, 349
EcoT22I	ATGCAT	1 cut(s)	385
ErhI	CCWWGG	4 cut(s)	10, 97, 121, 349
FaeI	CATG	4 cut(s)	101, 209, 383, 387
FaiI	YATR	7 cut(s)	63, 99, 207, 221, 332, 381, 385
FaqI	GGGAC	1 cut(s)	194
FatI	CATG	4 cut(s)	97, 205, 379, 383
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	357, 429, 438
FokI	GGATG	4 cut(s)	296, 401, 446, 455
Fsp4HI	GCNGC	3 cut(s)	357, 429, 438
FspBI	CTAG	1 cut(s)	342
GluI	GCNGC	3 cut(s)	357, 429, 438
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	2 cut(s)	30, 327
Hin1II	CATG	4 cut(s)	101, 209, 383, 387
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	30, 327
HphI	GGTGA	3 cut(s)	49, 103, 125
Hpy166II	GTNNAC	3 cut(s)	94, 157, 159
Hpy188I	TCNGA	3 cut(s)	425, 453, 464
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	3 cut(s)	94, 157, 159
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	6 cut(s)	4, 253, 284, 383, 431, 440
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 434, 437
HpyF3I	CTNAG	2 cut(s)	108, 129
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	101, 209, 383, 387
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	255, 391, 399
LmnI	GCTCC	4 cut(s)	80, 268, 345, 425
Lsp1109I	GCAGC	3 cut(s)	343, 415, 424
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	342
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	3 cut(s)	257, 393, 401
MboI	GATC	3 cut(s)	255, 391, 399
MboII	GAAGA	1 cut(s)	394
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	2 cut(s)	255, 399
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	194
MmeI	TCCRAC	1 cut(s)	391
Mph1103I	ATGCAT	1 cut(s)	385
MroXI	GAANNNNTTC	1 cut(s)	44
MspI	CCGG	2 cut(s)	30, 327
MspR9I	CCNGG	2 cut(s)	31, 484
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	484
MwoI	GCNNNNNNNGC	3 cut(s)	179, 434, 437
NciI	CCSGG	1 cut(s)	31
NcoI	CCATGG	1 cut(s)	97
NdeII	GATC	3 cut(s)	255, 391, 399
NlaIII	CATG	4 cut(s)	101, 209, 383, 387
NlaIV	GGNNCC	5 cut(s)	28, 47, 264, 325, 347
NmuCI	GTSAC	1 cut(s)	113
NsiI	ATGCAT	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	44
Pfl23II	CGTACG	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	358, 430, 439
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	482
PspGI	CCWGG	1 cut(s)	482
PspLI	CGTACG	1 cut(s)	238
PspN4I	GGNNCC	5 cut(s)	28, 47, 264, 325, 347
PspPI	GGNCC	2 cut(s)	376, 413
PsrI	GAACNNNNNNTAC	2 cut(s)	86, 118
PsuI	RGATCY	2 cut(s)	255, 399
RsaI	GTAC	2 cut(s)	158, 240
RsaNI	GTAC	2 cut(s)	157, 239
SatI	GCNGC	3 cut(s)	357, 429, 438
Sau3AI	GATC	3 cut(s)	255, 391, 399
Sau96I	GGNCC	2 cut(s)	376, 413
SchI	GAGTC	1 cut(s)	194
ScrFI	CCNGG	2 cut(s)	31, 484
SetI	ASST	3 cut(s)	85, 240, 430
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	376, 413
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	1 cut(s)	78
SspMI	CTAG	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	29, 482
StyI	CCWWGG	4 cut(s)	10, 97, 121, 349
TaaI	ACNGT	1 cut(s)	163
TaiI	ACGT	1 cut(s)	240
TasI	AATT	1 cut(s)	18
TatI	WGTACW	1 cut(s)	156
TscAI	CASTG	4 cut(s)	166, 181, 291, 325
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	3 cut(s)	356, 428, 437
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	2 cut(s)	287, 409
TspRI	CASTG	4 cut(s)	166, 181, 291, 325
VpaK11BI	GGWCC	2 cut(s)	376, 413
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	1 cut(s)	342
Zsp2I	ATGCAT	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.