Indole-3-acetic acid-amido synthetase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46370 AT2G46370 AT2G46370 AT2G46370 |
| fragaria_vesca | FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 |
| malus_domestica | MD01G1076500.v1.1 MD07G1145900.v1.1 |
| prunus_persica | Prupe.2G184100_v2.0.a1 Prupe.2G184100_v2.0.a1 Prupe.2G184100_v2.0.a1 Prupe.2G184100_v2.0.a1 |
| pyrus_communis | pycom01g10570 pycom07g14550 pycom07g14560 |
| rosa_chinensis | RchiOBHm_Chr1g0358981 |
| rosa_laevigata | RLG00000027911 |
| rosa_multiflora | Rmu_sc0004044.1_g000003 |
| rosa_roxburghii | Rroxscaffold_4G00297490 |
| rosa_rugosa | Rorug01G0266700 Rorug01G0266800.1 |
| rosa_samantha | Rh1AG280100 Rh1BG247100 Rh1CG264500 Rh1DG275400 |
| rosa_wichuraiana | Rw1G024900 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 65 |
| Acc36I | ACCTGC | 1 cut(s) | 1310 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1211 |
| AccBSI | CCGCTC | 1 cut(s) | 1684 |
| AccII | CGCG | 3 cut(s) | 272, 530, 1660 |
| AccIII | TCCGGA | 1 cut(s) | 983 |
| AciI | CCGC | 5 cut(s) | 270, 272, 338, 1248, 1682 |
| AclI | AACGTT | 1 cut(s) | 642 |
| AclWI | GGATC | 7 cut(s) | 261, 274, 305, 1055, 1195, 1538, 1551 |
| AcoI | YGGCCR | 1 cut(s) | 1185 |
| AcsI | RAATTY | 2 cut(s) | 1391, 1695 |
| AcuI | CTGAAG | 4 cut(s) | 263, 783, 1158, 1293 |
| AfaI | GTAC | 6 cut(s) | 278, 448, 548, 1037, 1217, 1328 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 955, 1183, 1211 |
| AgsI | TTSAA | 9 cut(s) | 200, 325, 518, 601, 664, 930, 1078, 1422, 1768 |
| AhlI | ACTAGT | 1 cut(s) | 1310 |
| AjnI | CCWGG | 1 cut(s) | 1546 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 236, 268, 938, 970, 1131, 1163, 1266, 1298 |
| Alw21I | GWGCWC | 2 cut(s) | 443, 1389 |
| Alw26I | GTCTC | 2 cut(s) | 109, 870 |
| AlwI | GGATC | 7 cut(s) | 261, 274, 305, 1055, 1195, 1538, 1551 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 140 |
| Ama87I | CYCGRG | 1 cut(s) | 1685 |
| Aor13HI | TCCGGA | 1 cut(s) | 983 |
| AoxI | GGCC | 6 cut(s) | 114, 461, 567, 721, 1185, 1678 |
| ApoI | RAATTY | 2 cut(s) | 1391, 1695 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1616, 1648 |
| AseI | ATTAAT | 1 cut(s) | 1007 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1805 |
| AspLEI | GCGC | 1 cut(s) | 1662 |
| AspS9I | GGNCC | 7 cut(s) | 361, 568, 722, 883, 1059, 1303, 1679 |
| AsuC2I | CCSGG | 1 cut(s) | 1178 |
| AsuHPI | GGTGA | 5 cut(s) | 401, 472, 1262, 1298, 1592 |
| AsuII | TTCGAA | 1 cut(s) | 1693 |
| AsuNHI | GCTAGC | 1 cut(s) | 1757 |
| AvaI | CYCGRG | 1 cut(s) | 1685 |
| AvaII | GGWCC | 4 cut(s) | 361, 883, 1059, 1303 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1639, 1672 |
| BalI | TGGCCA | 1 cut(s) | 1187 |
| BamHI | GGATCC | 2 cut(s) | 266, 1543 |
| BanII | GRGCYC | 2 cut(s) | 443, 1389 |
| Bbv12I | GWGCWC | 2 cut(s) | 443, 1389 |
| BccI | CCATC | 7 cut(s) | 410, 433, 487, 759, 916, 1137, 1599 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1457, 1491 |
| BciT130I | CCWGG | 1 cut(s) | 1548 |
| BciVI | GTATCC | 1 cut(s) | 1640 |
| BcnI | CCSGG | 1 cut(s) | 1178 |
| BcoDI | GTCTC | 2 cut(s) | 109, 870 |
| BcuI | ACTAGT | 1 cut(s) | 1310 |
| BfaI | CTAG | 4 cut(s) | 1311, 1340, 1739, 1758 |
| BfmI | CTRYAG | 3 cut(s) | 572, 697, 1491 |
| BfuAI | ACCTGC | 1 cut(s) | 1310 |
| BfuI | GTATCC | 1 cut(s) | 1640 |
| BlpI | GCTNAGC | 1 cut(s) | 938 |
| BmcAI | AGTACT | 1 cut(s) | 278 |
| Bme1390I | CCNGG | 2 cut(s) | 1178, 1548 |
| Bme18I | GGWCC | 4 cut(s) | 361, 883, 1059, 1303 |
| BmeT110I | CYCGRG | 1 cut(s) | 1685 |
| BmgT120I | GGNCC | 7 cut(s) | 361, 568, 722, 883, 1059, 1303, 1679 |
| BmiI | GGNNCC | 6 cut(s) | 268, 363, 884, 1060, 1545, 1711 |
| BmrFI | CCNGG | 2 cut(s) | 1178, 1548 |
| BmrI | ACTGGG | 1 cut(s) | 420 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BmtI | GCTAGC | 1 cut(s) | 1761 |
| BmuI | ACTGGG | 1 cut(s) | 420 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 938 |
| Bpu14I | TTCGAA | 1 cut(s) | 1693 |
| BpuEI | CTTGAG | 3 cut(s) | 5, 1504, 1728 |
| BpuMI | CCSGG | 1 cut(s) | 1178 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1727 |
| BsaJI | CCNNGG | 5 cut(s) | 111, 270, 1062, 1176, 1539 |
| BsaWI | WCCGGW | 1 cut(s) | 983 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 955, 1183, 1211 |
| Bse1I | ACTGG | 6 cut(s) | 415, 419, 620, 1001, 1259, 1762 |
| Bse3DI | GCAATG | 3 cut(s) | 210, 552, 1831 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1727 |
| BseAI | TCCGGA | 1 cut(s) | 983 |
| BseBI | CCWGG | 1 cut(s) | 1548 |
| BseDI | CCNNGG | 5 cut(s) | 111, 270, 1062, 1176, 1539 |
| BseGI | GGATG | 6 cut(s) | 56, 220, 402, 425, 1148, 1227 |
| BseJI | GATNNNNATC | 1 cut(s) | 1727 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 955, 1183, 1211 |
| BseMI | GCAATG | 3 cut(s) | 210, 552, 1831 |
| BseMII | CTCAG | 6 cut(s) | 210, 447, 467, 901, 952, 1226 |
| BseNI | ACTGG | 6 cut(s) | 415, 419, 620, 1001, 1259, 1762 |
| BsgI | GTGCAG | 1 cut(s) | 1140 |
| Bsh1236I | CGCG | 3 cut(s) | 272, 530, 1660 |
| BshFI | GGCC | 6 cut(s) | 116, 463, 569, 723, 1187, 1680 |
| BsiHKAI | GWGCWC | 2 cut(s) | 443, 1389 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1685 |
| BsiSI | CCGG | 3 cut(s) | 984, 1178, 1402 |
| BslFI | GGGAC | 3 cut(s) | 407, 791, 1278 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 955, 1183, 1211 |
| BsmAI | GTCTC | 2 cut(s) | 109, 870 |
| BsmBI | CGTCTC | 1 cut(s) | 870 |
| BsmFI | GGGAC | 3 cut(s) | 407, 791, 1278 |
| BsmI | GAATGC | 1 cut(s) | 827 |
| BsnI | GGCC | 6 cut(s) | 116, 463, 569, 723, 1187, 1680 |
| BsoBI | CYCGRG | 1 cut(s) | 1685 |
| Bsp119I | TTCGAA | 1 cut(s) | 1693 |
| Bsp1286I | GDGCHC | 2 cut(s) | 443, 1389 |
| Bsp13I | TCCGGA | 1 cut(s) | 983 |
| Bsp143I | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 938 |
| Bsp19I | CCATGG | 1 cut(s) | 1062 |
| BspACI | CCGC | 5 cut(s) | 270, 272, 338, 1248, 1682 |
| BspANI | GGCC | 6 cut(s) | 116, 463, 569, 723, 1187, 1680 |
| BspCNI | CTCAG | 6 cut(s) | 211, 446, 466, 900, 951, 1227 |
| BspEI | TCCGGA | 1 cut(s) | 983 |
| BspFNI | CGCG | 3 cut(s) | 272, 530, 1660 |
| BspHI | TCATGA | 1 cut(s) | 1050 |
| BspLI | GGNNCC | 6 cut(s) | 268, 363, 884, 1060, 1545, 1711 |
| BspMAI | CTGCAG | 3 cut(s) | 576, 701, 1495 |
| BspMI | ACCTGC | 1 cut(s) | 1310 |
| BspOI | GCTAGC | 1 cut(s) | 1761 |
| BspPI | GGATC | 7 cut(s) | 261, 274, 305, 1055, 1195, 1538, 1551 |
| BspT104I | TTCGAA | 1 cut(s) | 1693 |
| BsrBI | CCGCTC | 1 cut(s) | 1684 |
| BsrDI | GCAATG | 3 cut(s) | 210, 552, 1831 |
| BsrI | ACTGG | 6 cut(s) | 415, 419, 620, 1001, 1259, 1762 |
| BssECI | CCNNGG | 5 cut(s) | 111, 270, 1062, 1176, 1539 |
| BssMI | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| BssT1I | CCWWGG | 1 cut(s) | 1062 |
| Bst2UI | CCWGG | 1 cut(s) | 1548 |
| Bst4CI | ACNGT | 3 cut(s) | 1282, 1331, 1619 |
| Bst6I | CTCTTC | 2 cut(s) | 94, 1284 |
| BstBI | TTCGAA | 1 cut(s) | 1693 |
| BstC8I | GCNNGC | 3 cut(s) | 593, 1682, 1759 |
| BstDEI | CTNAG | 7 cut(s) | 219, 433, 453, 887, 938, 1235, 1601 |
| BstDSI | CCRYGG | 3 cut(s) | 270, 1062, 1539 |
| BstF5I | GGATG | 6 cut(s) | 56, 220, 402, 425, 1148, 1227 |
| BstFNI | CGCG | 3 cut(s) | 272, 530, 1660 |
| BstHHI | GCGC | 1 cut(s) | 1662 |
| BstKTI | GATC | 7 cut(s) | 269, 313, 579, 920, 1050, 1203, 1546 |
| BstMAI | GTCTC | 2 cut(s) | 109, 870 |
| BstMBI | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1193, 1611, 1748, 1845 |
| BstNI | CCWGG | 1 cut(s) | 1548 |
| BstSCI | CCNGG | 2 cut(s) | 1176, 1546 |
| BstSFI | CTRYAG | 3 cut(s) | 572, 697, 1491 |
| BstUI | CGCG | 3 cut(s) | 272, 530, 1660 |
| BstX2I | RGATCY | 2 cut(s) | 266, 1543 |
| BstYI | RGATCY | 2 cut(s) | 266, 1543 |
| BsuI | GTATCC | 1 cut(s) | 1640 |
| BsuRI | GGCC | 6 cut(s) | 116, 463, 569, 723, 1187, 1680 |
| BtgI | CCRYGG | 3 cut(s) | 270, 1062, 1539 |
| BtsCI | GGATG | 6 cut(s) | 56, 220, 402, 425, 1148, 1227 |
| BtsI | GCAGTG | 1 cut(s) | 1848 |
| BtsIMutI | CAGTG | 7 cut(s) | 408, 441, 895, 1266, 1269, 1440, 1848 |
| BveI | ACCTGC | 1 cut(s) | 1310 |
| Cac8I | GCNNGC | 3 cut(s) | 593, 1682, 1759 |
| CaiI | CAGNNNCTG | 1 cut(s) | 140 |
| CciI | TCATGA | 1 cut(s) | 1050 |
| CfoI | GCGC | 1 cut(s) | 1662 |
| Cfr13I | GGNCC | 7 cut(s) | 361, 568, 722, 883, 1059, 1303, 1679 |
| Cfr42I | CCGCGG | 1 cut(s) | 273 |
| CseI | GACGC | 1 cut(s) | 613 |
| Csp6I | GTAC | 6 cut(s) | 277, 447, 547, 1036, 1216, 1327 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1509, 1544 |
| CviAII | CATG | 6 cut(s) | 505, 971, 1051, 1063, 1526, 1651 |
| CviQI | GTAC | 6 cut(s) | 277, 447, 547, 1036, 1216, 1327 |
| DdeI | CTNAG | 7 cut(s) | 219, 433, 453, 887, 938, 1235, 1601 |
| DpnI | GATC | 7 cut(s) | 268, 312, 578, 919, 1049, 1202, 1545 |
| DpnII | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| EaeI | YGGCCR | 1 cut(s) | 1185 |
| Eam1104I | CTCTTC | 2 cut(s) | 94, 1284 |
| EarI | CTCTTC | 2 cut(s) | 94, 1284 |
| Ecl136II | GAGCTC | 2 cut(s) | 441, 1387 |
| Eco130I | CCWWGG | 1 cut(s) | 1062 |
| Eco24I | GRGCYC | 2 cut(s) | 443, 1389 |
| Eco32I | GATATC | 1 cut(s) | 795 |
| Eco47I | GGWCC | 4 cut(s) | 361, 883, 1059, 1303 |
| Eco53kI | GAGCTC | 2 cut(s) | 441, 1387 |
| Eco57I | CTGAAG | 4 cut(s) | 263, 783, 1158, 1293 |
| Eco88I | CYCGRG | 1 cut(s) | 1685 |
| EcoICRI | GAGCTC | 2 cut(s) | 441, 1387 |
| EcoO109I | RGGNCCY | 2 cut(s) | 568, 883 |
| EcoRI | GAATTC | 1 cut(s) | 1695 |
| EcoRII | CCWGG | 1 cut(s) | 1546 |
| EcoRV | GATATC | 1 cut(s) | 795 |
| EcoT14I | CCWWGG | 1 cut(s) | 1062 |
| EcoT38I | GRGCYC | 2 cut(s) | 443, 1389 |
| ErhI | CCWWGG | 1 cut(s) | 1062 |
| Esp3I | CGTCTC | 1 cut(s) | 870 |
| FaeI | CATG | 6 cut(s) | 508, 974, 1054, 1066, 1529, 1654 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1697, 1729 |
| FaqI | GGGAC | 3 cut(s) | 407, 791, 1278 |
| FatI | CATG | 6 cut(s) | 504, 970, 1050, 1062, 1525, 1650 |
| FauI | CCCGC | 1 cut(s) | 1689 |
| FokI | GGATG | 6 cut(s) | 43, 227, 389, 412, 1155, 1214 |
| FriOI | GRGCYC | 2 cut(s) | 443, 1389 |
| FspBI | CTAG | 4 cut(s) | 1311, 1340, 1739, 1758 |
| GlaI | GCGC | 1 cut(s) | 1661 |
| HaeIII | GGCC | 6 cut(s) | 116, 463, 569, 723, 1187, 1680 |
| HapII | CCGG | 3 cut(s) | 984, 1178, 1402 |
| HgaI | GACGC | 1 cut(s) | 613 |
| HhaI | GCGC | 1 cut(s) | 1662 |
| Hin1II | CATG | 6 cut(s) | 508, 974, 1054, 1066, 1529, 1654 |
| Hin6I | GCGC | 1 cut(s) | 1660 |
| HinP1I | GCGC | 1 cut(s) | 1660 |
| HincII | GTYRAC | 2 cut(s) | 1162, 1669 |
| HindII | GTYRAC | 2 cut(s) | 1162, 1669 |
| HindIII | AAGCTT | 2 cut(s) | 1481, 1629 |
| HinfI | GANTC | 7 cut(s) | 122, 137, 392, 897, 967, 1266, 1723 |
| HpaII | CCGG | 3 cut(s) | 984, 1178, 1402 |
| HphI | GGTGA | 5 cut(s) | 401, 472, 1262, 1298, 1592 |
| Hpy166II | GTNNAC | 6 cut(s) | 646, 1162, 1531, 1539, 1583, 1669 |
| Hpy188III | TCNNGA | 8 cut(s) | 22, 314, 601, 875, 984, 1051, 1717, 1810 |
| Hpy8I | GTNNAC | 6 cut(s) | 646, 1162, 1531, 1539, 1583, 1669 |
| Hpy99I | CGWCG | 2 cut(s) | 488, 1469 |
| HpyAV | CCTTC | 8 cut(s) | 127, 205, 439, 453, 1133, 1699, 1723, 1795 |
| HpyCH4III | ACNGT | 3 cut(s) | 1282, 1331, 1619 |
| HpyCH4IV | ACGT | 1 cut(s) | 642 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1193, 1611, 1748, 1845 |
| HpyF3I | CTNAG | 7 cut(s) | 219, 433, 453, 887, 938, 1235, 1601 |
| HpySE526I | ACGT | 1 cut(s) | 642 |
| Hsp92II | CATG | 6 cut(s) | 508, 974, 1054, 1066, 1529, 1654 |
| HspAI | GCGC | 1 cut(s) | 1660 |
| Kpn2I | TCCGGA | 1 cut(s) | 983 |
| KspI | CCGCGG | 1 cut(s) | 273 |
| Kzo9I | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| LmnI | GCTCC | 4 cut(s) | 1066, 1404, 1748, 1836 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeI | CTAG | 4 cut(s) | 1311, 1340, 1739, 1758 |
| MaeII | ACGT | 1 cut(s) | 642 |
| MaeIII | GTNAC | 6 cut(s) | 343, 890, 992, 1276, 1331, 1550 |
| MalI | GATC | 7 cut(s) | 268, 312, 578, 919, 1049, 1202, 1545 |
| MbiI | CCGCTC | 1 cut(s) | 1684 |
| MboI | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| MflI | RGATCY | 2 cut(s) | 266, 1543 |
| MhlI | GDGCHC | 2 cut(s) | 443, 1389 |
| MlsI | TGGCCA | 1 cut(s) | 1187 |
| MluCI | AATT | 7 cut(s) | 378, 488, 953, 1082, 1169, 1391, 1695 |
| MluNI | TGGCCA | 1 cut(s) | 1187 |
| MlyI | GAGTC | 1 cut(s) | 1260 |
| MmeI | TCCRAC | 5 cut(s) | 132, 141, 604, 757, 1482 |
| Mox20I | TGGCCA | 1 cut(s) | 1187 |
| MroI | TCCGGA | 1 cut(s) | 983 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1805 |
| MscI | TGGCCA | 1 cut(s) | 1187 |
| MseI | TTAA | 3 cut(s) | 1007, 1791, 1861 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1777 |
| Msp20I | TGGCCA | 1 cut(s) | 1187 |
| MspA1I | CMGCKG | 3 cut(s) | 272, 923, 1248 |
| MspI | CCGG | 3 cut(s) | 984, 1178, 1402 |
| MspR9I | CCNGG | 2 cut(s) | 1178, 1548 |
| Mva1269I | GAATGC | 1 cut(s) | 827 |
| MvaI | CCWGG | 1 cut(s) | 1548 |
| MvnI | CGCG | 3 cut(s) | 272, 530, 1660 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1193, 1611, 1748, 1845 |
| NciI | CCSGG | 1 cut(s) | 1178 |
| NcoI | CCATGG | 1 cut(s) | 1062 |
| NdeII | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| NheI | GCTAGC | 1 cut(s) | 1757 |
| NlaIII | CATG | 6 cut(s) | 508, 974, 1054, 1066, 1529, 1654 |
| NlaIV | GGNNCC | 6 cut(s) | 268, 363, 884, 1060, 1545, 1711 |
| NmeAIII | GCCGAG | 1 cut(s) | 92 |
| NmuCI | GTSAC | 3 cut(s) | 890, 1276, 1550 |
| NspV | TTCGAA | 1 cut(s) | 1693 |
| PaeR7I | CTCGAG | 1 cut(s) | 1685 |
| PagI | TCATGA | 1 cut(s) | 1050 |
| PctI | GAATGC | 1 cut(s) | 827 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1805 |
| PfeI | GAWTC | 6 cut(s) | 122, 137, 392, 897, 967, 1723 |
| PflFI | GACNNNGTC | 2 cut(s) | 881, 1057 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1211 |
| PleI | GAGTC | 1 cut(s) | 1260 |
| PpsI | GAGTC | 1 cut(s) | 1260 |
| PpuMI | RGGWCCY | 1 cut(s) | 883 |
| PshBI | ATTAAT | 1 cut(s) | 1007 |
| PsiI | TTATAA | 1 cut(s) | 65 |
| Psp124BI | GAGCTC | 2 cut(s) | 443, 1389 |
| Psp1406I | AACGTT | 1 cut(s) | 642 |
| Psp5II | RGGWCCY | 1 cut(s) | 883 |
| Psp6I | CCWGG | 1 cut(s) | 1546 |
| PspGI | CCWGG | 1 cut(s) | 1546 |
| PspN4I | GGNNCC | 6 cut(s) | 268, 363, 884, 1060, 1545, 1711 |
| PspPI | GGNCC | 7 cut(s) | 361, 568, 722, 883, 1059, 1303, 1679 |
| PspPPI | RGGWCCY | 1 cut(s) | 883 |
| PspXI | VCTCGAGB | 1 cut(s) | 1685 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1208, 1240 |
| PstI | CTGCAG | 3 cut(s) | 576, 701, 1495 |
| PstNI | CAGNNNCTG | 1 cut(s) | 140 |
| PsuI | RGATCY | 2 cut(s) | 266, 1543 |
| PsyI | GACNNNGTC | 2 cut(s) | 881, 1057 |
| PvuII | CAGCTG | 1 cut(s) | 923 |
| RsaI | GTAC | 6 cut(s) | 278, 448, 548, 1037, 1217, 1328 |
| RsaNI | GTAC | 6 cut(s) | 277, 447, 547, 1036, 1216, 1327 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1777 |
| SacI | GAGCTC | 2 cut(s) | 443, 1389 |
| SacII | CCGCGG | 1 cut(s) | 273 |
| SaqAI | TTAA | 3 cut(s) | 1007, 1791, 1861 |
| Sau3AI | GATC | 7 cut(s) | 266, 310, 576, 917, 1047, 1200, 1543 |
| Sau96I | GGNCC | 7 cut(s) | 361, 568, 722, 883, 1059, 1303, 1679 |
| ScaI | AGTACT | 1 cut(s) | 278 |
| SchI | GAGTC | 1 cut(s) | 1260 |
| ScrFI | CCNGG | 2 cut(s) | 1178, 1548 |
| SduI | GDGCHC | 2 cut(s) | 443, 1389 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SfcI | CTRYAG | 3 cut(s) | 572, 697, 1491 |
| Sfr274I | CTCGAG | 1 cut(s) | 1685 |
| Sfr303I | CCGCGG | 1 cut(s) | 273 |
| SfuI | TTCGAA | 1 cut(s) | 1693 |
| SgrBI | CCGCGG | 1 cut(s) | 273 |
| SinI | GGWCC | 4 cut(s) | 361, 883, 1059, 1303 |
| SlaI | CTCGAG | 1 cut(s) | 1685 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1777 |
| SmlI | CTYRAG | 4 cut(s) | 20, 1519, 1685, 1743 |
| SmoI | CTYRAG | 4 cut(s) | 20, 1519, 1685, 1743 |
| SpeI | ACTAGT | 1 cut(s) | 1310 |
| Sse9I | AATT | 7 cut(s) | 378, 488, 953, 1082, 1169, 1391, 1695 |
| SsiI | CCGC | 5 cut(s) | 270, 272, 338, 1248, 1682 |
| SspI | AATATT | 3 cut(s) | 513, 717, 771 |
| SspMI | CTAG | 4 cut(s) | 1311, 1340, 1739, 1758 |
| SstI | GAGCTC | 2 cut(s) | 443, 1389 |
| StyD4I | CCNGG | 2 cut(s) | 1176, 1546 |
| StyI | CCWWGG | 1 cut(s) | 1062 |
| TaaI | ACNGT | 3 cut(s) | 1282, 1331, 1619 |
| TaiI | ACGT | 1 cut(s) | 645 |
| TaqI | TCGA | 6 cut(s) | 120, 171, 874, 1467, 1686, 1693 |
| TaqII | GACCGA | 1 cut(s) | 909 |
| TasI | AATT | 7 cut(s) | 378, 488, 953, 1082, 1169, 1391, 1695 |
| TatI | WGTACW | 2 cut(s) | 276, 1035 |
| TauI | GCSGC | 1 cut(s) | 340 |
| TfiI | GAWTC | 6 cut(s) | 122, 137, 392, 897, 967, 1723 |
| Tru1I | TTAA | 3 cut(s) | 1007, 1791, 1861 |
| Tru9I | TTAA | 3 cut(s) | 1007, 1791, 1861 |
| TscAI | CASTG | 7 cut(s) | 415, 441, 895, 1266, 1276, 1447, 1855 |
| TseFI | GTSAC | 3 cut(s) | 890, 1276, 1550 |
| Tsp45I | GTSAC | 3 cut(s) | 890, 1276, 1550 |
| TspDTI | ATGAA | 4 cut(s) | 384, 689, 959, 1216 |
| TspGWI | ACGGA | 3 cut(s) | 279, 1453, 1556 |
| TspRI | CASTG | 7 cut(s) | 415, 441, 895, 1266, 1276, 1447, 1855 |
| Tth111I | GACNNNGTC | 2 cut(s) | 881, 1057 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1211 |
| VpaK11BI | GGWCC | 4 cut(s) | 361, 883, 1059, 1303 |
| VspI | ATTAAT | 1 cut(s) | 1007 |
| XapI | RAATTY | 2 cut(s) | 1391, 1695 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 758, 1817 |
| XhoI | CTCGAG | 1 cut(s) | 1685 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1805 |
| XspI | CTAG | 4 cut(s) | 1311, 1340, 1739, 1758 |
| ZrmI | AGTACT | 1 cut(s) | 278 |