Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004986

Physical Location & Seq

Genomic Coordinates Reverse (-)

37881755 .. 37895573

Gene Structure 13819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0266700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGAGGAAAATGGCAAAACCCTGTAGTATTCTGGCGGAGAGGTTTGCTTGCACGGCCTCAATTTCAGATGACGTCCCTGAACAACAGGTCAAGGATACGTTGCATTTTCTCAAACGAATGGGTATCTCCGGCCCTGTTCCAGATCACTGCGAGACCAAAGACTTCTACTCCTACCTCGTTCATGGCATCCTTAGGCCCCTCAACATTCAACGAGGCCGTGTCACCTGCCTCGTCTCCGTTAAACCTGCTTTTATTAACTTTTTTGGTGGATTCCATGGAGGAGCTATAGCTGCTGTTGCTGAGGCTGTGTCGGTAGCTACTGCGAGAACGGTTGTGGCTGAGGATAAGGAGCTTTTTCTAGGGGAACTAAGCATCTCTTATCTCTCTTCTGCTCCAAAGAATGCAGAGGTGATAGTTGATGGATCTGTAGTTCGGAGTGGAAGAAATCTTACTGTAATAGCACAGGAGTTCAAGCTCAAGAAAACTGGGAACTTGATCTACACTGCTCGTGCTACCTTCTATCACATGCCTGTTTCGAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009719 GO:0009725 GO:0009733 GO:0010033 GO:0042221 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

GH3

Protein Analysis

181

Amino Acids

19.78

Weight (kDa)

9.23

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
4HBT	PF03061	89 - 162	5.1e-09	Thioesterase superfamily
4HBT_3	PF13622	89 - 173	8e-06	Acyl-CoA thioesterase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004986)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46370 AT2G46370 AT2G46370 AT2G46370
fragaria_vesca	FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 FvH4_7g16040 FvH4_7g16040
malus_domestica	MD01G1076500.v1.1 MD07G1145900.v1.1
prunus_persica	Prupe.2G184100_v2.0.a1 Prupe.2G184100_v2.0.a1 Prupe.2G184100_v2.0.a1 Prupe.2G184100_v2.0.a1
pyrus_communis	pycom01g10570 pycom07g14550 pycom07g14560
rosa_chinensis	RchiOBHm_Chr1g0358981
rosa_laevigata	RLG00000027911
rosa_multiflora	Rmu_sc0004044.1_g000003
rosa_roxburghii	Rroxscaffold_4G00297490
rosa_rugosa	Rorug01G0266700 Rorug01G0266800.1
rosa_samantha	Rh1AG280100 Rh1BG247100 Rh1CG264500 Rh1DG275400
rosa_wichuraiana	Rw1G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	233
AatII	GACGTC	1 cut(s)	75
Acc36I	ACCTGC	2 cut(s)	233, 253
AciI	CCGC	1 cut(s)	35
AclWI	GGATC	1 cut(s)	430
AcyI	GRCGYC	1 cut(s)	72
AgsI	TTSAA	2 cut(s)	209, 472
AloI	GAACNNNNNNTCC	2 cut(s)	414, 446
AluBI	AGCT	5 cut(s)	284, 290, 317, 352, 475
AluI	AGCT	5 cut(s)	284, 290, 317, 352, 475
Alw26I	GTCTC	2 cut(s)	146, 238
AlwI	GGATC	1 cut(s)	430
AoxI	GGCC	4 cut(s)	54, 130, 194, 214
ApeKI	GCWGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	131, 195
AsuHPI	GGTGA	2 cut(s)	214, 421
AsuII	TTCGAA	1 cut(s)	536
AxyI	CCTNAGG	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	433, 465
BauI	CACGAG	1 cut(s)	507
BbvCI	CCTCAGC	2 cut(s)	300, 339
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	413
BceAI	ACGGC	2 cut(s)	69, 201
BciVI	GTATCC	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	146, 238
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	3 cut(s)	22, 285, 426
BfuAI	ACCTGC	2 cut(s)	233, 253
BfuI	GTATCC	1 cut(s)	88
BisI	GCNGC	1 cut(s)	291
BlsI	GCNGC	1 cut(s)	292
BmgT120I	GGNCC	2 cut(s)	131, 195
BmiI	GGNNCC	1 cut(s)	197
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	195, 381
BmuI	ACTGGG	1 cut(s)	495
Bpu10I	CCTNAGC	2 cut(s)	300, 339
Bpu14I	TTCGAA	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	461
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bse1I	ACTGG	1 cut(s)	490
Bse21I	CCTNAGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	186
BseMII	CTCAG	2 cut(s)	291, 330
BseNI	ACTGG	1 cut(s)	490
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	277
BshFI	GGCC	4 cut(s)	56, 132, 196, 216
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	2 cut(s)	146, 238
BsmBI	CGTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	4 cut(s)	56, 132, 196, 216
Bso31I	GGTCTC	1 cut(s)	146
Bsp119I	TTCGAA	1 cut(s)	536
Bsp143I	GATC	3 cut(s)	142, 422, 495
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	35
BspANI	GGCC	4 cut(s)	56, 132, 196, 216
BspCNI	CTCAG	2 cut(s)	292, 331
BspLI	GGNNCC	1 cut(s)	197
BspMI	ACCTGC	2 cut(s)	233, 253
BspPI	GGATC	1 cut(s)	430
BspT104I	TTCGAA	1 cut(s)	536
BspTNI	GGTCTC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	3 cut(s)	142, 422, 495
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	1 cut(s)	274
Bst2BI	CACGAG	1 cut(s)	507
Bst4CI	ACNGT	2 cut(s)	331, 454
Bst6I	CTCTTC	1 cut(s)	391
BstACI	GRCGYC	1 cut(s)	72
BstBI	TTCGAA	1 cut(s)	536
BstC8I	GCNNGC	1 cut(s)	49
BstDEI	CTNAG	4 cut(s)	191, 300, 339, 368
BstDSI	CCRYGG	1 cut(s)	274
BstF5I	GGATG	1 cut(s)	186
BstKTI	GATC	3 cut(s)	145, 425, 498
BstMAI	GTCTC	2 cut(s)	146, 238
BstMBI	GATC	3 cut(s)	142, 422, 495
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 290, 296
BstNSI	RCATGY	1 cut(s)	529
BstSFI	CTRYAG	3 cut(s)	22, 285, 426
BstV1I	GCAGC	1 cut(s)	277
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu36I	CCTNAGG	1 cut(s)	191
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	4 cut(s)	56, 132, 196, 216
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	186
BtsI	GCAGTG	2 cut(s)	145, 501
BtsIMutI	CAGTG	2 cut(s)	145, 501
BveI	ACCTGC	2 cut(s)	233, 253
Cac8I	GCNNGC	1 cut(s)	49
Cfr13I	GGNCC	2 cut(s)	131, 195
CviAII	CATG	3 cut(s)	182, 275, 526
DdeI	CTNAG	4 cut(s)	191, 300, 339, 368
DpnI	GATC	3 cut(s)	144, 424, 497
DpnII	GATC	3 cut(s)	142, 422, 495
Eam1104I	CTCTTC	1 cut(s)	391
EarI	CTCTTC	1 cut(s)	391
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	146
Eco81I	CCTNAGG	1 cut(s)	191
EcoO109I	RGGNCCY	1 cut(s)	195
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
Esp3I	CGTCTC	1 cut(s)	238
FaeI	CATG	3 cut(s)	185, 278, 529
FaiI	YATR	5 cut(s)	183, 276, 287, 527, 544
FalI	AAGNNNNNCTT	2 cut(s)	361, 393
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	3 cut(s)	181, 274, 525
Fnu4HI	GCNGC	1 cut(s)	291
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	1 cut(s)	291
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	1 cut(s)	291
HaeIII	GGCC	4 cut(s)	56, 132, 196, 216
HapII	CCGG	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	3 cut(s)	185, 278, 529
HinfI	GANTC	1 cut(s)	270
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	214, 421
Hpy188I	TCNGA	2 cut(s)	67, 435
Hpy188III	TCNNGA	2 cut(s)	140, 478
HpyAV	CCTTC	1 cut(s)	526
HpyCH4III	ACNGT	2 cut(s)	331, 454
HpyCH4IV	ACGT	2 cut(s)	72, 98
HpyCH4V	TGCA	3 cut(s)	51, 103, 404
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 290, 296
HpyF3I	CTNAG	4 cut(s)	191, 300, 339, 368
HpySE526I	ACGT	2 cut(s)	72, 98
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	3 cut(s)	185, 278, 529
Kzo9I	GATC	3 cut(s)	142, 422, 495
LmnI	GCTCC	3 cut(s)	281, 349, 397
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	195, 381
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	2 cut(s)	72, 98
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	144, 424, 497
MboI	GATC	3 cut(s)	142, 422, 495
MboII	GAAGA	2 cut(s)	378, 453
MflI	RGATCY	1 cut(s)	422
MluCI	AATT	2 cut(s)	60, 539
MseI	TTAA	2 cut(s)	240, 255
MspI	CCGG	1 cut(s)	129
Mva1269I	GAATGC	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	53, 290, 296
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	3 cut(s)	142, 422, 495
NlaIII	CATG	3 cut(s)	185, 278, 529
NlaIV	GGNNCC	1 cut(s)	197
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	529
NspV	TTCGAA	1 cut(s)	536
PaqCI	CACCTGC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	270
PkrI	GCNGC	1 cut(s)	292
PspN4I	GGNNCC	1 cut(s)	197
PspPI	GGNCC	2 cut(s)	131, 195
PsrI	GAACNNNNNNTAC	2 cut(s)	482, 514
PsuI	RGATCY	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	240, 255
SatI	GCNGC	1 cut(s)	291
Sau3AI	GATC	3 cut(s)	142, 422, 495
Sau96I	GGNCC	2 cut(s)	131, 195
SfaNI	GCATC	2 cut(s)	195, 381
SfcI	CTRYAG	3 cut(s)	22, 285, 426
SfuI	TTCGAA	1 cut(s)	536
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	2 cut(s)	60, 539
SsiI	CCGC	1 cut(s)	35
SspMI	CTAG	1 cut(s)	359
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	2 cut(s)	331, 454
TaiI	ACGT	2 cut(s)	75, 101
TaqI	TCGA	1 cut(s)	536
TasI	AATT	2 cut(s)	60, 539
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	2 cut(s)	240, 255
Tru9I	TTAA	2 cut(s)	240, 255
TscAI	CASTG	2 cut(s)	152, 508
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	290
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	152, 508
XceI	RCATGY	1 cut(s)	529
XspI	CTAG	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.