Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0018106

Physical Location & Seq

Genomic Coordinates Reverse (-)

21978137 .. 21978970

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGAAAAAAAAAAAACGATCCCACCGAAACTGTACCCACTCATCCTCTCTCTTCTCTATCAGAGACAAAACCCGTCAAATTCAGTCCTCCAATCCAAAATCTCCCCCAAAGAAAATGCAGGAAAATAAATCAGACTCGGCCAGCAAAAACCCTAAGAAGGCCAATCTCCTCGACCACCACTCTATCAAACACATCCTCGACGAGTCCGTCACCGAGATCGTGACGGGGCGCGGATATGTGGAGGACGTCCGGATGAGCAATGTGAGGCTGTTTCTGGGCACCATCATCATCGCAATCGCTCTCTTCGCTCAGTTTTACAAGAAGAAGTTCCCCGAAAACCGAGATTTTCTCATCCTCTGCATCATAGTCTTCAATGTGTTGTTGCAGCTGATCATATTCACCAAGGAGAAGAATGCCATTCTCTTCACGTATCCTCCCGCTGTATGTTTTCTCCTTTTATTGGAAATGTCGCTACAAATGCTTGATAGCATGTTGATACTTTGCTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

170

Amino Acids

19.5

Weight (kDa)

9.75

Isoelectric Point (pI)

55.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	62 - 146	1.9e-18	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0018106)

Species	Orthologous Gene IDs
malus_domestica	MD01G1147400.v1.1 MD08G1058400.v1.1
prunus_persica	Prupe.2G246300_v2.0.a1
pyrus_communis	pycom07g19680
rosa_chinensis	RchiOBHm_Chr1g0369421
rosa_multiflora	Rmu_sc0006332.1_g000002
rosa_rugosa	Rorug01G0350000
rosa_samantha	Rh1AG357600 Rh1BG321700 Rh1DG352300 Rh6CG416000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	206
AatII	GACGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	278
AccII	CGCG	1 cut(s)	231
AccIII	TCCGGA	1 cut(s)	249
AciI	CCGC	2 cut(s)	231, 438
AclWI	GGATC	1 cut(s)	12
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	78
AcyI	GRCGYC	1 cut(s)	246
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	2 cut(s)	157, 460
AgsI	TTSAA	1 cut(s)	373
AluBI	AGCT	1 cut(s)	388
AluI	AGCT	1 cut(s)	388
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	12
Aor13HI	TCCGGA	1 cut(s)	249
AoxI	GGCC	2 cut(s)	138, 159
ApeKI	GCWGC	1 cut(s)	385
ApoI	RAATTY	1 cut(s)	78
Asp700I	GAANNNNTTC	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	202, 391
BaeGI	GKGCMC	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	361
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	290
BciVI	GTATCC	1 cut(s)	441
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	57
BfuI	GTATCC	1 cut(s)	441
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
BmiI	GGNNCC	1 cut(s)	280
BmsI	GCATC	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	361
BplI	GAGNNNNNCTC	2 cut(s)	333, 365
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	246
BsaJI	CCNNGG	1 cut(s)	402
BsaWI	WCCGGW	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	418, 448
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 460
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	402
BseGI	GGATG	4 cut(s)	41, 192, 258, 351
BseLI	CCNNNNNNNGG	2 cut(s)	157, 460
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	323
BseRI	GAGGAG	1 cut(s)	158
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	1 cut(s)	397
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	140, 161
BshNI	GGYRCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	157, 460
BsmAI	GTCTC	1 cut(s)	57
BsmI	GAATGC	1 cut(s)	418
BsnI	GGCC	2 cut(s)	140, 161
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	17, 216, 390
BspACI	CCGC	2 cut(s)	231, 438
BspANI	GGCC	2 cut(s)	140, 161
BspCNI	CTCAG	1 cut(s)	322
BspEI	TCCGGA	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	278
BsrDI	GCAATG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	402
BssMI	GATC	3 cut(s)	17, 216, 390
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	402
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	3 cut(s)	56, 308, 428
BstACI	GRCGYC	1 cut(s)	246
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	2 cut(s)	153, 309
BstF5I	GGATG	4 cut(s)	41, 192, 258, 351
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	3 cut(s)	20, 219, 393
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	17, 216, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 478
BstNSI	RCATGY	1 cut(s)	493
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	397
BstV2I	GAAGAC	1 cut(s)	361
BsuI	GTATCC	1 cut(s)	441
BsuRI	GGCC	2 cut(s)	140, 161
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	4 cut(s)	41, 192, 258, 351
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	1 cut(s)	231
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	1 cut(s)	490
CviJI	RGCY	4 cut(s)	140, 161, 268, 388
CviKI_1	RGCY	4 cut(s)	140, 161, 268, 388
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	2 cut(s)	153, 309
DpnI	GATC	3 cut(s)	19, 218, 392
DpnII	GATC	3 cut(s)	17, 216, 390
DrdI	GACNNNNNNGTC	1 cut(s)	206
DseDI	GACNNNNNNGTC	1 cut(s)	206
EaeI	YGGCCR	1 cut(s)	138
Eam1104I	CTCTTC	3 cut(s)	56, 308, 428
EarI	CTCTTC	3 cut(s)	56, 308, 428
Eco130I	CCWWGG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	402
ErhI	CCWWGG	1 cut(s)	402
FaeI	CATG	1 cut(s)	493
FaiI	YATR	5 cut(s)	237, 365, 395, 445, 491
FatI	CATG	1 cut(s)	489
FauI	CCCGC	1 cut(s)	445
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	4 cut(s)	28, 179, 265, 338
Fsp4HI	GCNGC	1 cut(s)	386
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	2 cut(s)	140, 161
HapII	CCGG	1 cut(s)	250
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	1 cut(s)	493
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	134, 203
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	202, 391
Hpy188I	TCNGA	2 cut(s)	62, 133
Hpy188III	TCNNGA	2 cut(s)	220, 250
Hpy99I	CGWCG	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	2 cut(s)	246, 428
HpyCH4V	TGCA	3 cut(s)	118, 360, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 478
HpyF3I	CTNAG	2 cut(s)	153, 309
HpySE526I	ACGT	2 cut(s)	246, 428
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	493
HspAI	GCGC	1 cut(s)	229
Kpn2I	TCCGGA	1 cut(s)	249
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	17, 216, 390
LpnPI	CCDG	4 cut(s)	104, 154, 260, 263
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	1 cut(s)	369
MaeII	ACGT	2 cut(s)	246, 428
MaeIII	GTNAC	2 cut(s)	208, 220
MalI	GATC	3 cut(s)	19, 218, 392
MboI	GATC	3 cut(s)	17, 216, 390
MboII	GAAGA	6 cut(s)	43, 295, 334, 361, 415, 421
MhlI	GDGCHC	1 cut(s)	281
MluCI	AATT	1 cut(s)	78
MlyI	GAGTC	2 cut(s)	128, 212
MnlI	CCTC	8 cut(s)	55, 97, 179, 206, 235, 258, 365, 444
MroI	TCCGGA	1 cut(s)	249
MroXI	GAANNNNTTC	1 cut(s)	326
MspA1I	CMGCKG	2 cut(s)	388, 440
MspI	CCGG	1 cut(s)	250
Mva1269I	GAATGC	1 cut(s)	418
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	305, 478
NdeII	GATC	3 cut(s)	17, 216, 390
NlaIII	CATG	1 cut(s)	493
NlaIV	GGNNCC	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	116
NmuCI	GTSAC	2 cut(s)	208, 220
NspI	RCATGY	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	2 cut(s)	22, 204
PctI	GAATGC	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	326
PkrI	GCNGC	1 cut(s)	387
PleI	GAGTC	2 cut(s)	128, 211
PpsI	GAGTC	2 cut(s)	128, 211
Ppu21I	YACGTR	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	3 cut(s)	17, 216, 390
SchI	GAGTC	2 cut(s)	128, 212
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	3 cut(s)	249, 390, 431
SfaNI	GCATC	1 cut(s)	369
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	231, 438
StyI	CCWWGG	1 cut(s)	402
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	2 cut(s)	249, 431
TaqI	TCGA	2 cut(s)	171, 198
TasI	AATT	1 cut(s)	78
TseFI	GTSAC	2 cut(s)	208, 220
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	2 cut(s)	208, 220
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	196
XapI	RAATTY	1 cut(s)	78
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	326
ZraI	GACGTC	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.