Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0018106

Physical Location & Seq

Genomic Coordinates Reverse (-)

45474082 .. 45474437

Gene Structure 356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG321700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGAAGAAAAGAAATCACAGTCGGCCACCAAAAACCCTAAGAAGGCCAACCTCGTCGACCACCACTCCATCAAGCACGTCCTCGACGAGTCTGTAACTGAGATCGTAACGAGCCGTGGATATGTGGAAGACGTGAGGATGAGCAATCTGAGGCTGGTTATGGGGACCGTTATCATTGTGATTGCTCTCTTCGCTCAGTTTTACAAGAAGAAGTTCCCGGAGAACCGAGACTTTCTCCTCCTCTGCATCGCCTTATATCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

88

Amino Acids

10.15

Weight (kDa)

9.13

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	24 - 86	1.1e-15	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018106)

Species	Orthologous Gene IDs
malus_domestica	MD01G1147400.v1.1 MD08G1058400.v1.1
prunus_persica	Prupe.2G246300_v2.0.a1
pyrus_communis	pycom07g19680
rosa_chinensis	RchiOBHm_Chr1g0369421
rosa_multiflora	Rmu_sc0006332.1_g000002
rosa_rugosa	Rorug01G0350000
rosa_samantha	Rh1AG357600 Rh1BG321700 Rh1DG352300 Rh6CG416000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	24
AfiI	CCNNNNNNNGG	1 cut(s)	43
AjiI	CACGTC	2 cut(s)	79, 133
Alw26I	GTCTC	1 cut(s)	222
AoxI	GGCC	2 cut(s)	24, 45
Asp700I	GAANNNNTTC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	165
AsuC2I	CCSGG	1 cut(s)	218
AvaII	GGWCC	1 cut(s)	165
BbsI	GAAGAC	1 cut(s)	135
BccI	CCATC	1 cut(s)	77
BceAI	ACGGC	1 cut(s)	99
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	222
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	165
BmgBI	CACGTC	2 cut(s)	79, 133
BmgT120I	GGNCC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	166
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	219, 251
BpuMI	CCSGG	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	3 cut(s)	90, 140, 209
BseRI	GAGGAG	2 cut(s)	227, 230
BshFI	GGCC	2 cut(s)	26, 47
BsiSI	CCGG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	1 cut(s)	222
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	26, 47
Bsp143I	GATC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	26, 47
BspCNI	CTCAG	3 cut(s)	91, 141, 208
BspLI	GGNNCC	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	102
Bst4CI	ACNGT	2 cut(s)	21, 169
Bst6I	CTCTTC	1 cut(s)	194
BstDEI	CTNAG	4 cut(s)	39, 99, 149, 195
BstDSI	CCRYGG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	144
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	1 cut(s)	102
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	216
BstV2I	GAAGAC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	26, 47
BtgI	CCRYGG	1 cut(s)	115
BtgZI	GCGATG	1 cut(s)	232
BtrI	CACGTC	2 cut(s)	79, 133
BtsCI	GGATG	1 cut(s)	144
Cfr13I	GGNCC	1 cut(s)	165
CviJI	RGCY	4 cut(s)	26, 47, 114, 154
CviKI_1	RGCY	4 cut(s)	26, 47, 114, 154
DdeI	CTNAG	4 cut(s)	39, 99, 149, 195
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
EaeI	YGGCCR	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	165
FaiI	YATR	3 cut(s)	123, 161, 256
FaqI	GGGAC	1 cut(s)	178
FblI	GTMKAC	1 cut(s)	57
FokI	GGATG	1 cut(s)	151
HaeIII	GGCC	2 cut(s)	26, 47
HapII	CCGG	1 cut(s)	218
HincII	GTYRAC	1 cut(s)	58
HindII	GTYRAC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	89
HpaII	CCGG	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	1 cut(s)	150
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	2 cut(s)	59, 89
HpyAV	CCTTC	1 cut(s)	37
HpyCH4III	ACNGT	2 cut(s)	21, 169
HpyCH4IV	ACGT	2 cut(s)	78, 132
HpyCH4V	TGCA	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	4 cut(s)	39, 99, 149, 195
HpySE526I	ACGT	2 cut(s)	78, 132
Kzo9I	GATC	1 cut(s)	102
LpnPI	CCDG	2 cut(s)	140, 231
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	2 cut(s)	78, 132
MaeIII	GTNAC	2 cut(s)	94, 106
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	4 cut(s)	17, 140, 181, 220
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	6 cut(s)	62, 92, 129, 144, 248, 251
MroXI	GAANNNNTTC	1 cut(s)	212
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	191
NciI	CCSGG	1 cut(s)	218
NdeII	GATC	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	216
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PspN4I	GGNNCC	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	56
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	1 cut(s)	165
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	3 cut(s)	54, 81, 135
SfaNI	GCATC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	165
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	21, 169
TaiI	ACGT	2 cut(s)	81, 135
TaqI	TCGA	2 cut(s)	57, 84
VpaK11BI	GGWCC	1 cut(s)	165
XmiI	GTMKAC	1 cut(s)	57
XmnI	GAANNNNTTC	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.