Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0018106

Physical Location & Seq

Genomic Coordinates Reverse (-)

60040020 .. 60040548

Gene Structure 529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG416000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGCAAGAGACAAAAGACGCGAGCAGCAAGCCCAAAAATCCTAAGAAGGCCAACCTCTCAGATCACAGTTCCATCAAGCACCTCCTCGACGAGTCCGTCTCCGAGATTGTTACGAGTCGGGGATATGTGGAGGATACCAAGTTAAGTAACTTGAAGTTGTTGATTGGAACCACTGTGATAACCATTGCTCTATTTGCTCAGTTCTACAAGAAGAAATTTCCTGAAAACCAGTACTTCCTGATTGGATGCATTGTATCATATCCTTTTTCAATGGCCAGCCTTCAGCTCTGGTTACATTGTTCATATAAATCTTTGCTTTTTCCAATGTTGGAAAATCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016485 GO:0019538 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

SPC25

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

9.08

Isoelectric Point (pI)

27.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SPC25	PF06703	25 - 106	3.3e-18	Microsomal signal peptidase 25 kDa subunit (SPC25)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0018106)

Species	Orthologous Gene IDs
malus_domestica	MD01G1147400.v1.1 MD08G1058400.v1.1
prunus_persica	Prupe.2G246300_v2.0.a1
pyrus_communis	pycom07g19680
rosa_chinensis	RchiOBHm_Chr1g0369421
rosa_multiflora	Rmu_sc0006332.1_g000002
rosa_rugosa	Rorug01G0350000
rosa_samantha	Rh1AG357600 Rh1BG321700 Rh1DG352300 Rh6CG416000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AccII	CGCG	1 cut(s)	20
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	154, 270
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	2, 103
AoxI	GGCC	2 cut(s)	48, 273
ApeKI	GCWGC	1 cut(s)	24
ApoI	RAATTY	1 cut(s)	215
BalI	TGGCCA	1 cut(s)	275
BbvI	GCAGC	1 cut(s)	36
BccI	CCATC	1 cut(s)	80
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	2 cut(s)	2, 103
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmcAI	AGTACT	1 cut(s)	233
BmiI	GGNNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bse1I	ACTGG	1 cut(s)	229
Bse3DI	GCAATG	1 cut(s)	183
BseGI	GGATG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	183
BseMII	CTCAG	2 cut(s)	72, 212
BseNI	ACTGG	1 cut(s)	229
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	2 cut(s)	50, 275
BsmAI	GTCTC	2 cut(s)	2, 103
BsmBI	CGTCTC	1 cut(s)	103
BsnI	GGCC	2 cut(s)	50, 275
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	2 cut(s)	50, 275
BspCNI	CTCAG	2 cut(s)	71, 211
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	1 cut(s)	169
BsrDI	GCAATG	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	61
Bst4CI	ACNGT	2 cut(s)	68, 175
BstC8I	GCNNGC	3 cut(s)	22, 29, 277
BstDEI	CTNAG	3 cut(s)	42, 58, 198
BstF5I	GGATG	1 cut(s)	251
BstFNI	CGCG	1 cut(s)	20
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	2, 103
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	50, 275
BtsCI	GGATG	1 cut(s)	251
BtsIMutI	CAGTG	1 cut(s)	171
Cac8I	GCNNGC	3 cut(s)	22, 29, 277
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	232
CviJI	RGCY	5 cut(s)	31, 50, 275, 279, 286
CviKI_1	RGCY	5 cut(s)	31, 50, 275, 279, 286
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	42, 58, 198
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
EaeI	YGGCCR	1 cut(s)	273
Eco57I	CTGAAG	1 cut(s)	266
EcoT22I	ATGCAT	1 cut(s)	251
Esp3I	CGTCTC	1 cut(s)	103
FaiI	YATR	4 cut(s)	126, 259, 304, 306
Fnu4HI	GCNGC	1 cut(s)	25
FokI	GGATG	1 cut(s)	258
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
HaeIII	GGCC	2 cut(s)	50, 275
HgaI	GACGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	92, 115
Hpy188I	TCNGA	2 cut(s)	61, 103
Hpy188III	TCNNGA	2 cut(s)	221, 238
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	2 cut(s)	40, 290
HpyCH4III	ACNGT	2 cut(s)	68, 175
HpyCH4V	TGCA	2 cut(s)	4, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	3 cut(s)	42, 58, 198
Kzo9I	GATC	1 cut(s)	61
LpnPI	CCDG	5 cut(s)	234, 242, 251, 274, 289
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	236
MaeIII	GTNAC	3 cut(s)	109, 146, 291
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	275
MluCI	AATT	1 cut(s)	215
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	2 cut(s)	101, 124
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	4 cut(s)	65, 92, 95, 124
Mox20I	TGGCCA	1 cut(s)	275
Mph1103I	ATGCAT	1 cut(s)	251
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	275
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	1 cut(s)	61
NlaIV	GGNNCC	1 cut(s)	169
NsiI	ATGCAT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	1 cut(s)	26
PleI	GAGTC	2 cut(s)	100, 123
PpsI	GAGTC	2 cut(s)	100, 123
PspN4I	GGNNCC	1 cut(s)	169
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	143
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	61
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	2 cut(s)	101, 124
SetI	ASST	3 cut(s)	57, 84, 288
SfaNI	GCATC	1 cut(s)	236
Sse9I	AATT	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	68, 175
TaqI	TCGA	1 cut(s)	87
TasI	AATT	1 cut(s)	215
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	143
Tru9I	TTAA	1 cut(s)	143
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	291
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	1 cut(s)	215
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.