Rorug01G0350000

signal peptidase complex subunit

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Reverse (-)
46774260 .. 46774646
387 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0350000.1

Sequence Viewer

Length: 387 bp
ATGTTTTTTATCGTGGATGGAGTTGTAAGCATTGAAAAGAGAGATTGTTCTAGTAATTTGCAACGAGATGTAGGAGAATTATGTGGAGGGCAACTTCTTGCTTCGCCAACAGCTGAGTCTGCTAGGGCAATGGGTGTTGTTGAAGCCCTTGTTCTAATGGCCAGTGATATGGAGAGACTGGGCGTTCATTTCGCAACGCACTTCAAAGGATACTGCAACTCCAGAAGTCGGTTGTATATTCATCTACAAAATGTTGGGGCAGCAATCTTTACTGAAGAAGACCTAAAGAAGGCTACACAAATTACCATGAATGTAGAGTACTTGGTAAAGGAGGCTATGCAACAATTTACAAAGCGATACTACCAGATAATTCAGTCGTTGCGGTAA

Protein Analysis

128

Amino Acids

14.43

Weight (kDa)

6.82

Isoelectric Point (pI)

40.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018106)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 382
AcoI YGGCCR 1 cut(s) 159
AcuI CTGAAG 1 cut(s) 294
AfaI GTAC 1 cut(s) 320
AfiI CCNNNNNNNGG 2 cut(s) 228, 289
AgsI TTSAA 3 cut(s) 35, 143, 205
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw26I GTCTC 1 cut(s) 169
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 1 cut(s) 260
BalI TGGCCA 1 cut(s) 161
BbsI GAAGAC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 11
BciVI GTATCC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 2 cut(s) 51, 123
BfuI GTATCC 1 cut(s) 203
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmcAI AGTACT 1 cut(s) 320
BmrI ACTGGG 1 cut(s) 188
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 289
Bse1I ACTGG 2 cut(s) 162, 183
Bse3DI GCAATG 1 cut(s) 135
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 228, 289
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 2 cut(s) 162, 183
BseXI GCAGC 1 cut(s) 272
BshFI GGCC 1 cut(s) 161
BslI CCNNNNNNNGG 2 cut(s) 228, 289
BsmAI GTCTC 1 cut(s) 169
BsnI GGCC 1 cut(s) 161
BspACI CCGC 1 cut(s) 382
BspANI GGCC 1 cut(s) 161
BspCNI CTCAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 135
BsrI ACTGG 2 cut(s) 162, 183
BstDEI CTNAG 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 285
BstXI CCANNNNNNTGG 1 cut(s) 169
BsuI GTATCC 1 cut(s) 203
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 22
BtsIMutI CAGTG 1 cut(s) 169
Csp6I GTAC 1 cut(s) 319
CviAII CATG 1 cut(s) 307
CviJI RGCY 5 cut(s) 113, 146, 161, 293, 335
CviKI_1 RGCY 5 cut(s) 113, 146, 161, 293, 335
CviQI GTAC 1 cut(s) 319
DdeI CTNAG 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 159
Eco57I CTGAAG 1 cut(s) 294
EcoNI CCTNNNNNAGG 1 cut(s) 287
FaeI CATG 1 cut(s) 310
FaiI YATR 5 cut(s) 82, 170, 237, 308, 338
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 29
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 2 cut(s) 51, 123
GluI GCNGC 1 cut(s) 261
GsuI CTGGAG 1 cut(s) 205
HaeIII GGCC 1 cut(s) 161
Hin1II CATG 1 cut(s) 310
HinfI GANTC 1 cut(s) 116
Hpy188III TCNNGA 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 61, 216, 340
HpyF10VI GCNNNNNNNGC 1 cut(s) 119
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 310
LpnPI CCDG 4 cut(s) 164, 175, 235, 377
Lsp1109I GCAGC 1 cut(s) 272
MaeI CTAG 2 cut(s) 51, 123
MboII GAAGA 2 cut(s) 287, 290
MlsI TGGCCA 1 cut(s) 161
MluCI AATT 5 cut(s) 55, 77, 300, 344, 369
MluNI TGGCCA 1 cut(s) 161
MlyI GAGTC 1 cut(s) 125
MnlI CCTC 2 cut(s) 80, 325
Mox20I TGGCCA 1 cut(s) 161
MscI TGGCCA 1 cut(s) 161
Msp20I TGGCCA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 119
NlaIII CATG 1 cut(s) 310
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 1 cut(s) 320
RsaNI GTAC 1 cut(s) 319
SatI GCNGC 1 cut(s) 261
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 1 cut(s) 125
SetI ASST 2 cut(s) 115, 285
Sse9I AATT 5 cut(s) 55, 77, 300, 344, 369
SsiI CCGC 1 cut(s) 382
SspMI CTAG 2 cut(s) 51, 123
TasI AATT 5 cut(s) 55, 77, 300, 344, 369
TatI WGTACW 1 cut(s) 318
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 260
TspDTI ATGAA 3 cut(s) 176, 230, 323
TspRI CASTG 1 cut(s) 169
XagI CCTNNNNNAGG 1 cut(s) 287
XspI CTAG 2 cut(s) 51, 123
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.