Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0017999

Physical Location & Seq

Genomic Coordinates Reverse (-)

621025 .. 621859

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCGTCAGAGAGGAAGATAACTCTGAAGAGCTCGGACGGCGAGACGTTCGAGGTGGACGAGGCGGTGGCTTTGATGTCTCAGACGATAAAGCACATGGTGGAGGACGATTGTGCCGACAACGGGATCCCGCTGCCCAACGTCAACAGCAAGATCTTGGCGAAGGTCATCGAGTACTGCCGGAAGCACGTCGAGGCCGCTAAGCCCGAAGAACGCGCCTCCGTCGATGAAGACCTCAAGGCTTGGGACGCCGAATTCGTCAAGGTCGACCAGGCCACGCTCTTCGATCTCATCCTGGCTGCGAATTATTTGAACATAAAGAGCTTGCTGGACCTGACTTGCCAAACAGTGGCGGACATCGATCAAGGGAAAAACGCCCGAGGAGATTCGCAAGACGTTCAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

136

Amino Acids

14.98

Weight (kDa)

4.59

Isoelectric Point (pI)

30.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 64	5.5e-31	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017999)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g07431
prunus_persica	Prupe.4G065500_v2.0.a1
pyrus_communis	pycom08g00800
rosa_laevigata	RLG00000031833
rosa_multiflora	Rmu_sc0009975.1_g000018
rosa_roxburghii	Rroxscaffold_1G00065020
rosa_rugosa	Rorug04G0456900
rosa_samantha	Rh5BG083900 Rh5CG097500 Rh5DG084000
rosa_wichuraiana	Rw5G007720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	216
AciI	CCGC	4 cut(s)	65, 131, 198, 353
AclWI	GGATC	2 cut(s)	121, 134
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	123, 349
AgsI	TTSAA	2 cut(s)	313, 401
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	270, 294
AluBI	AGCT	2 cut(s)	33, 324
AluI	AGCT	2 cut(s)	33, 324
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	38, 84
AlwI	GGATC	2 cut(s)	121, 134
Ama87I	CYCGRG	1 cut(s)	378
AoxI	GGCC	2 cut(s)	195, 273
ApeKI	GCWGC	2 cut(s)	133, 299
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	1 cut(s)	218
AspS9I	GGNCC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	378
AvaII	GGWCC	1 cut(s)	331
BamHI	GGATCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	2 cut(s)	120, 286
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	272, 296
BcoDI	GTCTC	2 cut(s)	38, 84
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	3 cut(s)	134, 198, 300
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	3 cut(s)	135, 199, 301
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	272, 296
Bme18I	GGWCC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	378
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	272, 296
BpiI	GAAGAC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	221
Bsa29I	ATCGAT	1 cut(s)	360
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	379
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 349
BseBI	CCWGG	2 cut(s)	272, 296
BseCI	ATCGAT	1 cut(s)	360
BseDI	CCNNGG	1 cut(s)	379
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	123, 349
BseMII	CTCAG	1 cut(s)	95
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	120, 286
Bsh1236I	CGCG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	197, 275
BshVI	ATCGAT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	123, 349
BsmAI	GTCTC	2 cut(s)	38, 84
BsmBI	CGTCTC	1 cut(s)	38
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	197, 275
BsoBI	CYCGRG	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	126, 153, 286, 361
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	65, 131, 198, 353
BspANI	GGCC	2 cut(s)	197, 275
BspCNI	CTCAG	1 cut(s)	94
BspDI	ATCGAT	1 cut(s)	360
BspFNI	CGCG	1 cut(s)	216
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BspQI	GCTCTTC	2 cut(s)	23, 287
BssECI	CCNNGG	1 cut(s)	379
BssMI	GATC	4 cut(s)	126, 153, 286, 361
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	272, 296
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	23, 287
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	2 cut(s)	81, 201
BstF5I	GGATG	1 cut(s)	291
BstFNI	CGCG	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	218
BstKTI	GATC	4 cut(s)	129, 156, 289, 364
BstMAI	GTCTC	2 cut(s)	38, 84
BstMBI	GATC	4 cut(s)	126, 153, 286, 361
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 248
BstNI	CCWGG	2 cut(s)	272, 296
BstSCI	CCNGG	2 cut(s)	270, 294
BstUI	CGCG	1 cut(s)	216
BstV1I	GCAGC	2 cut(s)	120, 286
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	126, 153
BstYI	RGATCY	2 cut(s)	126, 153
Bsu15I	ATCGAT	1 cut(s)	360
BsuRI	GGCC	2 cut(s)	197, 275
BsuTUI	ATCGAT	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	326
CfoI	GCGC	1 cut(s)	218
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	1 cut(s)	360
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	8 cut(s)	33, 71, 197, 205, 242, 275, 299, 324
CviKI_1	RGCY	8 cut(s)	33, 71, 197, 205, 242, 275, 299, 324
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	2 cut(s)	81, 201
DpnI	GATC	4 cut(s)	128, 155, 288, 363
DpnII	GATC	4 cut(s)	126, 153, 286, 361
DraIII	CACNNNGTG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	23, 287
EarI	CTCTTC	2 cut(s)	23, 287
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	1 cut(s)	331
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	270, 294
EcoT38I	GRGCYC	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	38
FaeI	CATG	1 cut(s)	100
FaiI	YATR	2 cut(s)	98, 317
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	138
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	134, 198, 300
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	3 cut(s)	134, 198, 300
GlaI	GCGC	1 cut(s)	217
GluI	GCNGC	3 cut(s)	134, 198, 300
HaeIII	GGCC	2 cut(s)	197, 275
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	218
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	216
HinP1I	GCGC	1 cut(s)	216
HincII	GTYRAC	2 cut(s)	145, 268
HindII	GTYRAC	2 cut(s)	145, 268
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	181
Hpy166II	GTNNAC	3 cut(s)	58, 145, 268
Hpy188I	TCNGA	4 cut(s)	10, 27, 37, 84
Hpy8I	GTNNAC	3 cut(s)	58, 145, 268
Hpy99I	CGWCG	2 cut(s)	194, 227
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	4 cut(s)	47, 141, 189, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 248
HpyF3I	CTNAG	2 cut(s)	81, 201
HpySE526I	ACGT	4 cut(s)	47, 141, 189, 396
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	216
Kzo9I	GATC	4 cut(s)	126, 153, 286, 361
LguI	GCTCTTC	2 cut(s)	23, 287
LpnPI	CCDG	7 cut(s)	194, 257, 281, 284, 308, 314, 347
Lsp1109I	GCAGC	2 cut(s)	120, 286
MaeII	ACGT	4 cut(s)	47, 141, 189, 396
MalI	GATC	4 cut(s)	128, 155, 288, 363
MboI	GATC	4 cut(s)	126, 153, 286, 361
MboII	GAAGA	5 cut(s)	28, 40, 221, 242, 274
MflI	RGATCY	2 cut(s)	126, 153
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	254, 304
MnlI	CCTC	8 cut(s)	6, 46, 55, 97, 187, 229, 245, 374
MseI	TTAA	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	133
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	272, 296
MvaI	CCWGG	2 cut(s)	272, 296
MvnI	CGCG	1 cut(s)	216
MwoI	GCNNNNNNNGC	2 cut(s)	39, 248
NdeII	GATC	4 cut(s)	126, 153, 286, 361
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	1 cut(s)	128
PciSI	GCTCTTC	2 cut(s)	23, 287
PcsI	WCGNNNNNNNCGW	4 cut(s)	57, 114, 255, 264
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	135, 199, 301
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	270, 294
PspGI	CCWGG	2 cut(s)	270, 294
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	331
PsuI	RGATCY	2 cut(s)	126, 153
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	2 cut(s)	23, 287
SaqAI	TTAA	1 cut(s)	406
SatI	GCNGC	3 cut(s)	134, 198, 300
Sau3AI	GATC	4 cut(s)	126, 153, 286, 361
Sau96I	GGNCC	1 cut(s)	331
ScaI	AGTACT	1 cut(s)	176
ScrFI	CCNGG	2 cut(s)	272, 296
SduI	GDGCHC	1 cut(s)	35
SinI	GGWCC	1 cut(s)	331
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	254, 304
SsiI	CCGC	4 cut(s)	65, 131, 198, 353
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	270, 294
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	4 cut(s)	50, 144, 192, 399
TaqI	TCGA	7 cut(s)	51, 171, 192, 225, 267, 285, 360
TasI	AATT	2 cut(s)	254, 304
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	406
Tru9I	TTAA	1 cut(s)	406
TscAI	CASTG	1 cut(s)	354
TseI	GCWGC	2 cut(s)	133, 299
TspDTI	ATGAA	1 cut(s)	243
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.