Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0006866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1957025 .. 1959188

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGATGTGTAAGCGTTACTTGTTTTTGTCTTCATATCTTGTAAAGGACTACAATGACAAAGAAAATATTGCTCCTCGTTCTCCTGAAGTGGCTGACGTGCCTTCATCTCCAATTGGTGATCCTGTCAAAGCTTTTGTGGACGATGAAGCTGAGGAAGAAGATGATAGTATGATCGATCATGACCTACATAGGTTCGAAGATACTGACGAAGATGAGGATGATGGAGACACTGAAGAGCTTAATGATATGATAGCAACTGGTTATGAAGAAAGGCCAGTTGATGATGAAAGACGGAATGAACTCCATCAAAAGTGGCTCGAGCAACAGGATGCCTCTGGAACAGAAAAACTTATGCAGAAGCTGAAGTTTGGTTCTAAAGGGAAAAAAACAGCGTTGGTTGAAGAGAAAGATGCAGATGGACAGGAAGATGAAGAGTTTGGTGATGAAAATGCAGAAGATAAAGAGCTTGGTGATGACGATGCAGCAGAAGATTCAGCACCAGCAAATGCTGTGCGAATGAACTTACGAGAAATAAAGCAAATGATGCCTCTACTGTATACTGATAACGATGATGTATACTTGTCATCTGACGATGATGAGACAGAAAAGAGACTATCTAAACAGTGCCTGTCTGAGAAAGCTGTGAGTTCTTATCGGTTTATTGAATGCGTCTTCAAATTTAGGTCCACTATACCTTATGACGGTGGAGTATTTTCATTGTATAAATCATTTATCCATATACAGAAGGAGATTCTACCGAAAAAGACTACTGCAGCCAAGCTTAGCAAGTCCAAGGCAAAGTTTGGTACTCAGAAATCATCACCTGACACGGTATCAACTGAAGCTTTTGCGAATACAGAAACATTGGTTGAAGCCGGTGCACAGATAGACAGATCAGCTGGTGCTGGTGCGCAGGCGGAGGCATCAGCTGAAGCTGGTATGGGGACAAACACATCAGCTGGATCTTCGTTACTCACGCGAATCCGTCTTAGCTTCATTGGAAGACGGAAGGAAATCAAAGCGGACGAACGGACGTGTATACAGAAGAACCTAATGTGCATAAGAAACATTGATCCTGAATGGTGTTCAAGTAAAATGAAAGACGTTGTGATTGCCTCTTGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

41.96

Weight (kDa)

4.56

Isoelectric Point (pI)

49.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75150 AT1G75150 AT1G75150
fragaria_vesca	FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970
malus_domestica	MD08G1033500.v1.1 MD15G1030200.v1.1
prunus_persica	Prupe.1G381400_v2.0.a1 Prupe.1G381400_v2.0.a1
pyrus_communis	pycom08g02670 pycom08g02680 pycom15g02650
rosa_chinensis	RchiOBHm_Chr6g0300781
rosa_laevigata	RLG00000011302
rosa_multiflora	Rmu_sc0011226.1_g000002 Rmu_sc0028577.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167420
rosa_rugosa	Rorug06G0299200
rosa_samantha	Rh6AG412000 Rh6BG419200 Rh6CG426700 Rh6DG412000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	912
AccI	GTMKAC	3 cut(s)	557, 576, 1039
AccII	CGCG	1 cut(s)	979
AciI	CCGC	2 cut(s)	917, 1022
AclWI	GGATC	3 cut(s)	113, 970, 1067
AcsI	RAATTY	1 cut(s)	677
AcuI	CTGAAG	5 cut(s)	105, 252, 383, 861, 951
AfaI	GTAC	1 cut(s)	808
AfiI	CCNNNNNNNGG	1 cut(s)	701
AflIII	ACRYGT	1 cut(s)	1034
AgsI	TTSAA	5 cut(s)	401, 665, 676, 872, 1089
AjiI	CACGTC	2 cut(s)	97, 1035
Alw21I	GWGCWC	1 cut(s)	883
Alw26I	GTCTC	3 cut(s)	219, 593, 604
Alw44I	GTGCAC	1 cut(s)	879
AlwI	GGATC	3 cut(s)	113, 970, 1067
AlwNI	CAGNNNCTG	2 cut(s)	361, 628
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	1 cut(s)	272
ApaLI	GTGCAC	1 cut(s)	879
ApeKI	GCWGC	2 cut(s)	482, 773
ApoI	RAATTY	1 cut(s)	677
AspLEI	GCGC	1 cut(s)	913
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	4 cut(s)	128, 452, 482, 813
AsuII	TTCGAA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	317
AvaII	GGWCC	1 cut(s)	684
BaeGI	GKGCMC	1 cut(s)	883
BbsI	GAAGAC	3 cut(s)	21, 664, 1009
Bbv12I	GWGCWC	1 cut(s)	883
BbvCI	CCTCAGC	1 cut(s)	150
BbvI	GCAGC	2 cut(s)	494, 785
BccI	CCATC	3 cut(s)	215, 312, 410
BcoDI	GTCTC	3 cut(s)	219, 593, 604
BfmI	CTRYAG	1 cut(s)	771
BisI	GCNGC	2 cut(s)	483, 774
BlpI	GCTNAGC	1 cut(s)	782
BlsI	GCNGC	2 cut(s)	484, 775
Bme18I	GGWCC	1 cut(s)	684
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	2 cut(s)	97, 1035
BmgT120I	GGNCC	1 cut(s)	684
BmsI	GCATC	5 cut(s)	319, 400, 469, 534, 932
BpiI	GAAGAC	3 cut(s)	21, 664, 1009
Bpu10I	CCTNAGC	1 cut(s)	150
Bpu1102I	GCTNAGC	1 cut(s)	782
Bpu14I	TTCGAA	1 cut(s)	195
Bsa29I	ATCGAT	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	792
Bsc4I	CCNNNNNNNGG	1 cut(s)	701
Bse118I	RCCGGY	1 cut(s)	875
Bse1I	ACTGG	2 cut(s)	262, 275
BseCI	ATCGAT	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	2 cut(s)	223, 334
BseLI	CCNNNNNNNGG	1 cut(s)	701
BseMII	CTCAG	3 cut(s)	141, 624, 824
BseNI	ACTGG	2 cut(s)	262, 275
BseRI	GAGGAG	1 cut(s)	63
BseSI	GKGCMC	1 cut(s)	883
BseXI	GCAGC	2 cut(s)	494, 785
Bsh1236I	CGCG	1 cut(s)	979
BshFI	GGCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	174
BsiHKAI	GWGCWC	1 cut(s)	883
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	1 cut(s)	876
BslFI	GGGAC	1 cut(s)	958
BslI	CCNNNNNNNGG	1 cut(s)	701
BsmAI	GTCTC	3 cut(s)	219, 593, 604
BsmFI	GGGAC	1 cut(s)	958
BsmI	GAATGC	1 cut(s)	671
BsnI	GGCC	1 cut(s)	274
BsoBI	CYCGRG	1 cut(s)	317
Bsp119I	TTCGAA	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	883
Bsp143I	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
Bsp1720I	GCTNAGC	1 cut(s)	782
BspACI	CCGC	2 cut(s)	917, 1022
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	3 cut(s)	142, 625, 823
BspDI	ATCGAT	1 cut(s)	174
BspFNI	CGCG	1 cut(s)	979
BspHI	TCATGA	1 cut(s)	178
BspMAI	CTGCAG	1 cut(s)	775
BspPI	GGATC	3 cut(s)	113, 970, 1067
BspQI	GCTCTTC	1 cut(s)	228
BspT104I	TTCGAA	1 cut(s)	195
BsrFI	RCCGGY	1 cut(s)	875
BsrI	ACTGG	2 cut(s)	262, 275
BssAI	RCCGGY	1 cut(s)	875
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
BssNAI	GTATAC	3 cut(s)	558, 577, 1040
BssT1I	CCWWGG	1 cut(s)	792
Bst1107I	GTATAC	3 cut(s)	558, 577, 1040
Bst4CI	ACNGT	4 cut(s)	555, 624, 704, 832
Bst6I	CTCTTC	3 cut(s)	228, 396, 426
BstAPI	GCANNNNNTGC	1 cut(s)	544
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	915
BstDEI	CTNAG	6 cut(s)	150, 633, 782, 810, 989, 1125
BstF5I	GGATG	2 cut(s)	223, 334
BstFNI	CGCG	1 cut(s)	979
BstHHI	GCGC	1 cut(s)	913
BstKTI	GATC	6 cut(s)	121, 174, 178, 896, 965, 1075
BstMAI	GTCTC	3 cut(s)	219, 593, 604
BstMBI	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	771
BstSLI	GKGCMC	1 cut(s)	883
BstUI	CGCG	1 cut(s)	979
BstV1I	GCAGC	2 cut(s)	494, 785
BstV2I	GAAGAC	3 cut(s)	21, 664, 1009
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
BstZ17I	GTATAC	3 cut(s)	558, 577, 1040
Bsu15I	ATCGAT	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	174
BtrI	CACGTC	2 cut(s)	97, 1035
BtsCI	GGATG	2 cut(s)	223, 334
BtsIMutI	CAGTG	2 cut(s)	228, 629
Cac8I	GCNNGC	1 cut(s)	915
CaiI	CAGNNNCTG	2 cut(s)	361, 628
CciI	TCATGA	1 cut(s)	178
CfoI	GCGC	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	875
Cfr13I	GGNCC	1 cut(s)	684
ClaI	ATCGAT	1 cut(s)	174
CseI	GACGC	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	807
CviAII	CATG	1 cut(s)	179
CviQI	GTAC	1 cut(s)	807
DdeI	CTNAG	6 cut(s)	150, 633, 782, 810, 989, 1125
DpnI	GATC	6 cut(s)	120, 173, 177, 895, 964, 1074
DpnII	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
Eam1104I	CTCTTC	3 cut(s)	228, 396, 426
EarI	CTCTTC	3 cut(s)	228, 396, 426
EciI	GGCGGA	1 cut(s)	932
Eco130I	CCWWGG	1 cut(s)	792
Eco47I	GGWCC	1 cut(s)	684
Eco57I	CTGAAG	5 cut(s)	105, 252, 383, 861, 951
Eco88I	CYCGRG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	792
ErhI	CCWWGG	1 cut(s)	792
FaeI	CATG	1 cut(s)	182
FalI	AAGNNNNNCTT	1 cut(s)	34
FaqI	GGGAC	1 cut(s)	958
FatI	CATG	1 cut(s)	178
FblI	GTMKAC	3 cut(s)	557, 576, 1039
Fnu4HI	GCNGC	2 cut(s)	483, 774
FokI	GGATG	2 cut(s)	230, 341
Fsp4HI	GCNGC	2 cut(s)	483, 774
FspI	TGCGCA	1 cut(s)	912
GlaI	GCGC	1 cut(s)	912
GluI	GCNGC	2 cut(s)	483, 774
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	876
HgaI	GACGC	1 cut(s)	658
HhaI	GCGC	1 cut(s)	913
Hin1II	CATG	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	911
HinP1I	GCGC	1 cut(s)	911
HindIII	AAGCTT	3 cut(s)	129, 779, 843
HinfI	GANTC	3 cut(s)	491, 751, 981
HpaII	CCGG	1 cut(s)	876
HphI	GGTGA	4 cut(s)	128, 452, 482, 813
Hpy166II	GTNNAC	6 cut(s)	139, 558, 577, 687, 881, 1040
Hpy188I	TCNGA	3 cut(s)	589, 634, 813
Hpy188III	TCNNGA	4 cut(s)	83, 179, 336, 1076
Hpy8I	GTNNAC	6 cut(s)	139, 558, 577, 687, 881, 1040
HpyAV	CCTTC	3 cut(s)	111, 739, 1003
HpyCH4III	ACNGT	4 cut(s)	555, 624, 704, 832
HpyCH4IV	ACGT	3 cut(s)	96, 1034, 1104
HpyCH4V	TGCA	7 cut(s)	355, 413, 452, 482, 773, 881, 1059
HpyF10VI	GCNNNNNNNGC	1 cut(s)	544
HpyF3I	CTNAG	6 cut(s)	150, 633, 782, 810, 989, 1125
HpySE526I	ACGT	3 cut(s)	96, 1034, 1104
Hsp92II	CATG	1 cut(s)	182
HspAI	GCGC	1 cut(s)	911
Kzo9I	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	76
Lsp1109I	GCAGC	2 cut(s)	494, 785
LweI	GCATC	5 cut(s)	319, 400, 469, 534, 932
MaeII	ACGT	3 cut(s)	96, 1034, 1104
MaeIII	GTNAC	2 cut(s)	14, 969
MalI	GATC	6 cut(s)	120, 173, 177, 895, 964, 1074
MboI	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	1 cut(s)	883
MluCI	AATT	2 cut(s)	111, 677
MnlI	CCTC	7 cut(s)	84, 145, 208, 343, 558, 913, 1126
MseI	TTAA	1 cut(s)	240
MspA1I	CMGCKG	3 cut(s)	899, 929, 959
MspI	CCGG	1 cut(s)	876
MunI	CAATTG	1 cut(s)	111
Mva1269I	GAATGC	1 cut(s)	671
MvnI	CGCG	1 cut(s)	979
MwoI	GCNNNNNNNGC	1 cut(s)	544
NdeII	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
NlaIII	CATG	1 cut(s)	182
NsbI	TGCGCA	1 cut(s)	912
NspV	TTCGAA	1 cut(s)	195
PaeR7I	CTCGAG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	178
PciSI	GCTCTTC	1 cut(s)	228
PctI	GAATGC	1 cut(s)	671
PfeI	GAWTC	3 cut(s)	491, 751, 981
PkrI	GCNGC	2 cut(s)	484, 775
PspPI	GGNCC	1 cut(s)	684
PspXI	VCTCGAGB	1 cut(s)	317
PstI	CTGCAG	1 cut(s)	775
PstNI	CAGNNNCTG	2 cut(s)	361, 628
PsuI	RGATCY	1 cut(s)	962
PvuII	CAGCTG	3 cut(s)	899, 929, 959
RsaI	GTAC	1 cut(s)	808
RsaNI	GTAC	1 cut(s)	807
SapI	GCTCTTC	1 cut(s)	228
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	2 cut(s)	483, 774
Sau3AI	GATC	6 cut(s)	118, 171, 175, 893, 962, 1072
Sau96I	GGNCC	1 cut(s)	684
SduI	GDGCHC	1 cut(s)	883
SfaNI	GCATC	5 cut(s)	319, 400, 469, 534, 932
SfcI	CTRYAG	1 cut(s)	771
Sfr274I	CTCGAG	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	1 cut(s)	684
SlaI	CTCGAG	1 cut(s)	317
SmlI	CTYRAG	1 cut(s)	317
SmoI	CTYRAG	1 cut(s)	317
Sse9I	AATT	2 cut(s)	111, 677
SsiI	CCGC	2 cut(s)	917, 1022
SspI	AATATT	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	4 cut(s)	555, 624, 704, 832
TaiI	ACGT	3 cut(s)	99, 1037, 1107
TaqI	TCGA	3 cut(s)	174, 195, 318
TasI	AATT	2 cut(s)	111, 677
TfiI	GAWTC	3 cut(s)	491, 751, 981
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	235, 629
TseI	GCWGC	2 cut(s)	482, 773
TspGWI	ACGGA	4 cut(s)	307, 974, 1021, 1045
TspRI	CASTG	2 cut(s)	235, 629
VneI	GTGCAC	1 cut(s)	879
VpaK11BI	GGWCC	1 cut(s)	684
XapI	RAATTY	1 cut(s)	677
XhoI	CTCGAG	1 cut(s)	317
XmiI	GTMKAC	3 cut(s)	557, 576, 1039

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.