Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0006866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1629619 .. 1631692

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g02650.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGTTCTGATTCCGACGGGTTGGGCGGTGGAGGGGAAATCGATTCCAGTTTTGATTGTTTGGGCGGTGAAGGTGAAATGAATTCGAGTTTTGATGGTTTGGGTGGCGGCGAAGATGGCAACGGAGCTAAGAGGGTTTTGGATTTTGATTCTGCGGGAGAGGAATTTGGCAAAGAAGGCGAAGATCTAAACAAAGAGATGCCGGAAGAAAGTGGGGGTGTGAGGGTAGAAGAGACGGACAAGAAACGGCGTGGTTCTGATGGCTTTGAGGAAGAGGAGAACAAGAAGAAGAAAAAGAGGGCCAAGATCAAAACCGGGGCTGCCGAGGGCATAAGGACGACTGAAAAAGAAAGACGAGAGCATCTGAAGCAACTGCATGCTGAATCTCAGAGACTTTTGCGAGAAACCAGAGATGCAGCATTTAAACCCATACCACTTGTTCAGAAGCCGATATCTTCAGTACTGGAGAAAATTCGGAAAAGAAAACTGGAGGTTTCACAAAAATGTAGTAGTACAGGAGATTATAAGGTACTGAAAGTGGCAACTGAGGAGTCAATTGCATCCCAGGCCGGAAATGGGAATAGTGCAAATGAGGTGTGCATTGATGGGTCTAATGATAAGGAGGAGCATTCAAGCCGTGGAAATGTGTCTTCCGGGATGGATGTTGACGAGGAACCCAAGCAAACATTTCGAGCACCTATTGATGATACTCAGGACCTGTTTTCTGATAACCAGACTACCGGCGATAAGGATGGTCTGCCAAATGATGATTCCAAAAGTCCGCTGGAAGAGGTTTTTGCACCGTCCATACTTGCAATGAACTTAAAACTTGACTCTGCTCCTCCTGATGATGTTTCTTCTGACGAGGACTACAATGACAAAGAAAATATTGCTCCTCATTCGTCTGAAGTGGCTGACGTGCCTTCATCTCCAATCGGCGATCCTGTCAGAGCTTTTGTGGATGATGAAGCTGAGGAAGAAGACGACAGTGATCATGACCTGCATCGGTTCGAAGATAGTGAGGACGATGAGGATGATGGAGATGCTGCGGAGCTTAATGATATGATAGCAACTGGATATGAAGAAAGGCCAGTTGATAATGAAAGACGGAATGAACTCCATCAAAAGTGGCTCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

41.59

Weight (kDa)

4.41

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75150 AT1G75150 AT1G75150
fragaria_vesca	FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970
malus_domestica	MD08G1033500.v1.1 MD15G1030200.v1.1
prunus_persica	Prupe.1G381400_v2.0.a1 Prupe.1G381400_v2.0.a1
pyrus_communis	pycom08g02670 pycom08g02680 pycom15g02650
rosa_chinensis	RchiOBHm_Chr6g0300781
rosa_laevigata	RLG00000011302
rosa_multiflora	Rmu_sc0011226.1_g000002 Rmu_sc0028577.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167420
rosa_rugosa	Rorug06G0299200
rosa_samantha	Rh6AG412000 Rh6BG419200 Rh6CG426700 Rh6DG412000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	525
Acc36I	ACCTGC	1 cut(s)	1008
AciI	CCGC	6 cut(s)	27, 66, 108, 155, 782, 1049
AclWI	GGATC	1 cut(s)	935
AcsI	RAATTY	3 cut(s)	82, 164, 471
AcuI	CTGAAG	3 cut(s)	386, 441, 927
AfaI	GTAC	3 cut(s)	462, 514, 531
AfiI	CCNNNNNNNGG	1 cut(s)	576
AgsI	TTSAA	1 cut(s)	633
AjiI	CACGTC	1 cut(s)	919
AjnI	CCWGG	1 cut(s)	564
AjuI	GAANNNNNNNTTGG	2 cut(s)	754, 786
AluBI	AGCT	4 cut(s)	128, 953, 971, 1054
AluI	AGCT	4 cut(s)	128, 953, 971, 1054
Alw21I	GWGCWC	1 cut(s)	697
Alw26I	GTCTC	2 cut(s)	227, 385
AlwI	GGATC	1 cut(s)	935
AlwNI	CAGNNNCTG	1 cut(s)	718
Ama87I	CYCGRG	1 cut(s)	1133
AoxI	GGCC	3 cut(s)	300, 567, 1088
ApeKI	GCWGC	3 cut(s)	320, 416, 1046
ApoI	RAATTY	3 cut(s)	82, 164, 471
AspS9I	GGNCC	2 cut(s)	300, 715
AsuC2I	CCSGG	2 cut(s)	316, 655
AsuHPI	GGTGA	2 cut(s)	80, 86
AsuII	TTCGAA	1 cut(s)	1011
AvaI	CYCGRG	1 cut(s)	1133
AvaII	GGWCC	1 cut(s)	715
BbsI	GAAGAC	2 cut(s)	642, 987
Bbv12I	GWGCWC	1 cut(s)	697
BbvCI	CCTCAGC	1 cut(s)	972
BbvI	GCAGC	3 cut(s)	307, 428, 1033
BccI	CCATC	8 cut(s)	89, 110, 254, 599, 652, 746, 1031, 1128
BceAI	ACGGC	2 cut(s)	263, 621
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	1 cut(s)	566
BclI	TGATCA	1 cut(s)	991
BcnI	CCSGG	2 cut(s)	316, 655
BcoDI	GTCTC	2 cut(s)	227, 385
BfuAI	ACCTGC	1 cut(s)	1008
BglII	AGATCT	1 cut(s)	184
BisI	GCNGC	4 cut(s)	109, 321, 417, 1047
BlsI	GCNGC	4 cut(s)	110, 322, 418, 1048
BmcAI	AGTACT	1 cut(s)	462
Bme1390I	CCNGG	3 cut(s)	316, 566, 655
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	1133
BmgBI	CACGTC	1 cut(s)	919
BmgT120I	GGNCC	2 cut(s)	300, 715
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	3 cut(s)	316, 566, 655
BmsI	GCATC	6 cut(s)	189, 370, 403, 569, 1012, 1033
BpiI	GAAGAC	2 cut(s)	642, 987
BpmI	CTGGAG	2 cut(s)	485, 509
Bpu10I	CCTNAGC	1 cut(s)	972
Bpu14I	TTCGAA	1 cut(s)	1011
BpuMI	CCSGG	2 cut(s)	316, 655
Bsa29I	ATCGAT	1 cut(s)	42
BsaJI	CCNNGG	4 cut(s)	315, 324, 564, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	576
Bse118I	RCCGGY	1 cut(s)	740
Bse1I	ACTGG	5 cut(s)	48, 468, 492, 1078, 1091
Bse3DI	GCAATG	1 cut(s)	822
BseBI	CCWGG	1 cut(s)	566
BseCI	ATCGAT	1 cut(s)	42
BseDI	CCNNGG	4 cut(s)	315, 324, 564, 637
BseGI	GGATG	6 cut(s)	560, 663, 667, 757, 967, 1039
BseLI	CCNNNNNNNGG	1 cut(s)	576
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	4 cut(s)	401, 537, 725, 963
BseNI	ACTGG	5 cut(s)	48, 468, 492, 1078, 1091
BseRI	GAGGAG	5 cut(s)	290, 563, 638, 831, 885
BseXI	GCAGC	3 cut(s)	307, 428, 1033
BshFI	GGCC	3 cut(s)	302, 569, 1090
BshVI	ATCGAT	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	1133
BsiSI	CCGG	5 cut(s)	203, 315, 570, 654, 741
BslI	CCNNNNNNNGG	1 cut(s)	576
BsmAI	GTCTC	2 cut(s)	227, 385
BsmBI	CGTCTC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	628
BsnI	GGCC	3 cut(s)	302, 569, 1090
BsoBI	CYCGRG	1 cut(s)	1133
Bsp119I	TTCGAA	1 cut(s)	1011
Bsp1286I	GDGCHC	1 cut(s)	697
Bsp143I	GATC	4 cut(s)	184, 306, 940, 991
BspACI	CCGC	6 cut(s)	27, 66, 108, 155, 782, 1049
BspANI	GGCC	3 cut(s)	302, 569, 1090
BspCNI	CTCAG	4 cut(s)	400, 538, 724, 964
BspDI	ATCGAT	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	994
BspLI	GGNNCC	1 cut(s)	675
BspMI	ACCTGC	1 cut(s)	1008
BspPI	GGATC	1 cut(s)	935
BspT104I	TTCGAA	1 cut(s)	1011
BsrDI	GCAATG	1 cut(s)	822
BsrFI	RCCGGY	1 cut(s)	740
BsrI	ACTGG	5 cut(s)	48, 468, 492, 1078, 1091
BssAI	RCCGGY	1 cut(s)	740
BssECI	CCNNGG	4 cut(s)	315, 324, 564, 637
BssMI	GATC	4 cut(s)	184, 306, 940, 991
Bst2UI	CCWGG	1 cut(s)	566
Bst4CI	ACNGT	2 cut(s)	804, 989
Bst6I	CTCTTC	3 cut(s)	225, 267, 783
BstBI	TTCGAA	1 cut(s)	1011
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	5 cut(s)	129, 387, 546, 711, 972
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	6 cut(s)	560, 663, 667, 757, 967, 1039
BstKTI	GATC	4 cut(s)	187, 309, 943, 994
BstMAI	GTCTC	2 cut(s)	227, 385
BstMBI	GATC	4 cut(s)	184, 306, 940, 991
BstMWI	GCNNNNNNNGC	4 cut(s)	117, 177, 367, 566
BstNI	CCWGG	1 cut(s)	566
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	3 cut(s)	314, 564, 653
BstV1I	GCAGC	3 cut(s)	307, 428, 1033
BstV2I	GAAGAC	2 cut(s)	642, 987
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	302, 569, 1090
BsuTUI	ATCGAT	1 cut(s)	42
BtgI	CCRYGG	1 cut(s)	637
BtrI	CACGTC	1 cut(s)	919
BtsCI	GGATG	6 cut(s)	560, 663, 667, 757, 967, 1039
BtsIMutI	CAGTG	1 cut(s)	994
BveI	ACCTGC	1 cut(s)	1008
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	718
CciI	TCATGA	1 cut(s)	994
Cfr10I	RCCGGY	1 cut(s)	740
Cfr13I	GGNCC	2 cut(s)	300, 715
ClaI	ATCGAT	1 cut(s)	42
Csp6I	GTAC	3 cut(s)	461, 513, 530
CviAII	CATG	2 cut(s)	377, 995
CviQI	GTAC	3 cut(s)	461, 513, 530
DdeI	CTNAG	5 cut(s)	129, 387, 546, 711, 972
DpnI	GATC	4 cut(s)	186, 308, 942, 993
DpnII	GATC	4 cut(s)	184, 306, 940, 991
DraI	TTTAAA	1 cut(s)	424
Eam1104I	CTCTTC	3 cut(s)	225, 267, 783
EarI	CTCTTC	3 cut(s)	225, 267, 783
Eco32I	GATATC	1 cut(s)	453
Eco47I	GGWCC	1 cut(s)	715
Eco57I	CTGAAG	3 cut(s)	386, 441, 927
Eco88I	CYCGRG	1 cut(s)	1133
EcoO109I	RGGNCCY	1 cut(s)	715
EcoRI	GAATTC	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	564
EcoRV	GATATC	1 cut(s)	453
Esp3I	CGTCTC	1 cut(s)	227
FaeI	CATG	2 cut(s)	380, 998
FaiI	YATR	8 cut(s)	332, 378, 431, 525, 809, 996, 1064, 1080
FatI	CATG	2 cut(s)	376, 994
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	991
Fnu4HI	GCNGC	4 cut(s)	109, 321, 417, 1047
FokI	GGATG	6 cut(s)	547, 670, 674, 764, 974, 1046
Fsp4HI	GCNGC	4 cut(s)	109, 321, 417, 1047
GluI	GCNGC	4 cut(s)	109, 321, 417, 1047
GsuI	CTGGAG	2 cut(s)	485, 509
HaeIII	GGCC	3 cut(s)	302, 569, 1090
HapII	CCGG	5 cut(s)	203, 315, 570, 654, 741
Hin1II	CATG	2 cut(s)	380, 998
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	7 cut(s)	11, 44, 149, 383, 551, 770, 833
HpaII	CCGG	5 cut(s)	203, 315, 570, 654, 741
HphI	GGTGA	2 cut(s)	80, 86
Hpy166II	GTNNAC	1 cut(s)	667
Hpy188III	TCNNGA	3 cut(s)	713, 845, 995
Hpy8I	GTNNAC	1 cut(s)	667
Hpy99I	CGWCG	1 cut(s)	20
HpyAV	CCTTC	3 cut(s)	65, 170, 933
HpyCH4III	ACNGT	2 cut(s)	804, 989
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	8 cut(s)	376, 416, 560, 587, 600, 800, 815, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	117, 177, 367, 566
HpyF3I	CTNAG	5 cut(s)	129, 387, 546, 711, 972
HpySE526I	ACGT	1 cut(s)	918
Hsp92II	CATG	2 cut(s)	380, 998
Ksp22I	TGATCA	1 cut(s)	991
Kzo9I	GATC	4 cut(s)	184, 306, 940, 991
LmnI	GCTCC	5 cut(s)	125, 625, 844, 898, 1051
Lsp1109I	GCAGC	3 cut(s)	307, 428, 1033
LweI	GCATC	6 cut(s)	189, 370, 403, 569, 1012, 1033
MaeII	ACGT	1 cut(s)	918
MalI	GATC	4 cut(s)	186, 308, 942, 993
MboI	GATC	4 cut(s)	184, 306, 940, 991
MfeI	CAATTG	1 cut(s)	555
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	697
MluCI	AATT	4 cut(s)	82, 164, 471, 555
MlyI	GAGTC	2 cut(s)	560, 827
MmeI	TCCRAC	1 cut(s)	39
MseI	TTAA	3 cut(s)	423, 824, 1056
MslI	CAYNNNNRTG	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	784
MspI	CCGG	5 cut(s)	203, 315, 570, 654, 741
MspR9I	CCNGG	3 cut(s)	316, 566, 655
MunI	CAATTG	1 cut(s)	555
Mva1269I	GAATGC	1 cut(s)	628
MvaI	CCWGG	1 cut(s)	566
MwoI	GCNNNNNNNGC	4 cut(s)	117, 177, 367, 566
NciI	CCSGG	2 cut(s)	316, 655
NdeII	GATC	4 cut(s)	184, 306, 940, 991
NlaIII	CATG	2 cut(s)	380, 998
NlaIV	GGNNCC	1 cut(s)	675
NmeAIII	GCCGAG	1 cut(s)	349
NspI	RCATGY	1 cut(s)	380
NspV	TTCGAA	1 cut(s)	1011
PaeI	GCATGC	1 cut(s)	380
PaeR7I	CTCGAG	1 cut(s)	1133
PagI	TCATGA	1 cut(s)	994
PctI	GAATGC	1 cut(s)	628
PfeI	GAWTC	5 cut(s)	11, 44, 149, 383, 770
PfoI	TCCNGGA	1 cut(s)	653
PkrI	GCNGC	4 cut(s)	110, 322, 418, 1048
PleI	GAGTC	2 cut(s)	559, 827
PpsI	GAGTC	2 cut(s)	559, 827
PpuMI	RGGWCCY	1 cut(s)	715
PsiI	TTATAA	1 cut(s)	525
Psp5II	RGGWCCY	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	564
PspGI	CCWGG	1 cut(s)	564
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	300, 715
PspPPI	RGGWCCY	1 cut(s)	715
PspXI	VCTCGAGB	1 cut(s)	1133
PstNI	CAGNNNCTG	1 cut(s)	718
PsuI	RGATCY	1 cut(s)	184
RsaI	GTAC	3 cut(s)	462, 514, 531
RsaNI	GTAC	3 cut(s)	461, 513, 530
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	3 cut(s)	423, 824, 1056
SatI	GCNGC	4 cut(s)	109, 321, 417, 1047
Sau3AI	GATC	4 cut(s)	184, 306, 940, 991
Sau96I	GGNCC	2 cut(s)	300, 715
ScaI	AGTACT	1 cut(s)	462
SchI	GAGTC	2 cut(s)	560, 827
ScrFI	CCNGG	3 cut(s)	316, 566, 655
SduI	GDGCHC	1 cut(s)	697
SfaNI	GCATC	6 cut(s)	189, 370, 403, 569, 1012, 1033
Sfr274I	CTCGAG	1 cut(s)	1133
SfuI	TTCGAA	1 cut(s)	1011
SinI	GGWCC	1 cut(s)	715
SlaI	CTCGAG	1 cut(s)	1133
SmiMI	CAYNNNNRTG	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	1133
SmoI	CTYRAG	1 cut(s)	1133
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	4 cut(s)	82, 164, 471, 555
SsiI	CCGC	6 cut(s)	27, 66, 108, 155, 782, 1049
SspI	AATATT	1 cut(s)	889
StyD4I	CCNGG	3 cut(s)	314, 564, 653
TaaI	ACNGT	2 cut(s)	804, 989
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	5 cut(s)	42, 86, 691, 1011, 1134
TasI	AATT	4 cut(s)	82, 164, 471, 555
TatI	WGTACW	2 cut(s)	460, 512
TauI	GCSGC	1 cut(s)	111
TfiI	GAWTC	5 cut(s)	11, 44, 149, 383, 770
Tru1I	TTAA	3 cut(s)	423, 824, 1056
Tru9I	TTAA	3 cut(s)	423, 824, 1056
TscAI	CASTG	1 cut(s)	994
TseI	GCWGC	3 cut(s)	320, 416, 1046
TspDTI	ATGAA	7 cut(s)	95, 833, 915, 981, 1095, 1116, 1128
TspGWI	ACGGA	3 cut(s)	138, 251, 1123
TspRI	CASTG	1 cut(s)	994
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	3 cut(s)	82, 164, 471
XceI	RCATGY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	572, 781
XhoI	CTCGAG	1 cut(s)	1133
ZrmI	AGTACT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.