Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028577.1

Orthogroup ID

OG0006866

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1623

Gene Structure 1623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atggagttcgacgacgattttgagctcccaccaaactccgacgaggcttcccctccggtccgtgaaaggaagctgaagcgcttaaagaaaggagttagggtttccccagatccagtcctcgatcaaccagagagagcagccggattcgaaggcctcgatttaggggaatcgaatgagcaatcggagtcaaggattggatcggagggtttgggcgatgaaggtgaaatgaatcctggttttgatggtgagggagagttgaattccggtttctatgatttcggtggtgaaggtgaaaagggatctggtttagaaatgaattctggttttgatggtttgggtgaaggtgaaggagatgcctctggagctaagagggctttggattttgagtctgtggatgaggatttcggcgaaaaaggccaagagcgaagccaagagatgctagatgaaagtagggatacgatgatggaggaaccggagaagaaaaggcggagttccgatggcggtgaggaggagaaggacaagaagaagaagaataagagggccaagagcgttggtgatgatgcgaaatctaaagatgccgctgccaagagcaaaaggacggctgaaaaggaaagacaagagcatctgaagcagcttcatgcagaaactcagagacttttgcgagaaaccagagaagcagcatttaaacctatgccgattgttcagaagcccatatcgtcaattctggagaagattcggcaaagaaaactggaggtttcaaaaaagtctatgactatgaattcttttgttgatgacaatggatcttctagacggattatggaggagttcagttcagaaggtgctcctgtggatgtgactggaggcagtgaggtattgaaagcaacaattaaggagccaattgcatgccagactgaaaaagggagtggtacaaatgtggtgtgtatggatgcgtctaatgatcatatagatcattccggccatgaaaatgtttcttcccagatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

334

Amino Acids

36.73

Weight (kDa)

4.84

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006866)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75150 AT1G75150 AT1G75150
fragaria_vesca	FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970 FvH4_2g39970
malus_domestica	MD08G1033500.v1.1 MD15G1030200.v1.1
prunus_persica	Prupe.1G381400_v2.0.a1 Prupe.1G381400_v2.0.a1
pyrus_communis	pycom08g02670 pycom08g02680 pycom15g02650
rosa_chinensis	RchiOBHm_Chr6g0300781
rosa_laevigata	RLG00000011302
rosa_multiflora	Rmu_sc0011226.1_g000002 Rmu_sc0028577.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167420
rosa_rugosa	Rorug06G0299200
rosa_samantha	Rh6AG412000 Rh6BG419200 Rh6CG426700 Rh6DG412000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	487, 501, 579
AclWI	GGATC	4 cut(s)	104, 205, 307, 808
AcoI	YGGCCR	1 cut(s)	976
AcsI	RAATTY	3 cut(s)	259, 316, 778
AcuI	CTGAAG	2 cut(s)	95, 647
AfaI	GTAC	1 cut(s)	928
AfeI	AGCGCT	1 cut(s)	80
AgsI	TTSAA	3 cut(s)	259, 759, 877
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	4 cut(s)	25, 73, 365, 634
AluI	AGCT	4 cut(s)	25, 73, 365, 634
Alw21I	GWGCWC	2 cut(s)	27, 844
Alw26I	GTCTC	1 cut(s)	646
AlwI	GGATC	4 cut(s)	104, 205, 307, 808
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	4 cut(s)	151, 415, 540, 976
ApeKI	GCWGC	4 cut(s)	137, 581, 631, 677
ApoI	RAATTY	3 cut(s)	259, 316, 778
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspLEI	GCGC	1 cut(s)	81
AspS9I	GGNCC	2 cut(s)	58, 540
AsuHPI	GGTGA	8 cut(s)	233, 257, 296, 302, 350, 356, 515, 566
AsuII	TTCGAA	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	58
BaeI	ACNNNNGTAYC	2 cut(s)	918, 951
BanII	GRGCYC	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	27, 844
BbvI	GCAGC	4 cut(s)	149, 568, 643, 689
BccI	CCATC	4 cut(s)	236, 323, 457, 491
BceAI	ACGGC	1 cut(s)	615
BciT130I	CCWGG	1 cut(s)	234
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	1 cut(s)	958
BcoDI	GTCTC	1 cut(s)	646
BfaI	CTAG	2 cut(s)	440, 807
BfoI	RGCGCY	1 cut(s)	82
BfuI	GTATCC	1 cut(s)	448
BisI	GCNGC	5 cut(s)	138, 579, 582, 632, 678
BlsI	GCNGC	5 cut(s)	139, 580, 583, 633, 679
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 540
BmiI	GGNNCC	2 cut(s)	471, 894
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	6 cut(s)	343, 426, 550, 565, 631, 937
BpmI	CTGGAG	4 cut(s)	381, 746, 770, 879
Bpu14I	TTCGAA	1 cut(s)	147
BsaWI	WCCGGW	3 cut(s)	55, 263, 472
BsaXI	ACNNNNNCTCC	2 cut(s)	84, 114
Bse1I	ACTGG	3 cut(s)	113, 753, 862
BseBI	CCWGG	1 cut(s)	234
BseGI	GGATG	3 cut(s)	400, 856, 952
BseMII	CTCAG	1 cut(s)	662
BseNI	ACTGG	3 cut(s)	113, 753, 862
BseRI	GAGGAG	3 cut(s)	521, 524, 836
BseXI	GCAGC	4 cut(s)	149, 568, 643, 689
BshFI	GGCC	4 cut(s)	153, 417, 542, 978
BsiHKAI	GWGCWC	2 cut(s)	27, 844
BsiSI	CCGG	5 cut(s)	56, 141, 264, 473, 975
BsmAI	GTCTC	1 cut(s)	646
BsnI	GGCC	4 cut(s)	153, 417, 542, 978
Bsp119I	TTCGAA	1 cut(s)	147
Bsp1286I	GDGCHC	2 cut(s)	27, 844
Bsp143I	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
BspACI	CCGC	3 cut(s)	487, 501, 579
BspANI	GGCC	4 cut(s)	153, 417, 542, 978
BspCNI	CTCAG	1 cut(s)	661
BspLI	GGNNCC	2 cut(s)	471, 894
BspPI	GGATC	4 cut(s)	104, 205, 307, 808
BspT104I	TTCGAA	1 cut(s)	147
BsrI	ACTGG	3 cut(s)	113, 753, 862
BssMI	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
Bst2UI	CCWGG	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	904
BstDEI	CTNAG	2 cut(s)	366, 648
BstF5I	GGATG	3 cut(s)	400, 856, 952
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	7 cut(s)	112, 124, 200, 302, 803, 961, 970
BstMAI	GTCTC	1 cut(s)	646
BstMBI	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
BstMWI	GCNNNNNNNGC	4 cut(s)	362, 371, 414, 628
BstNI	CCWGG	1 cut(s)	234
BstNSI	RCATGY	1 cut(s)	906
BstSCI	CCNGG	1 cut(s)	232
BstV1I	GCAGC	4 cut(s)	149, 568, 643, 689
BstX2I	RGATCY	3 cut(s)	109, 299, 800
BstYI	RGATCY	3 cut(s)	109, 299, 800
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	4 cut(s)	153, 417, 542, 978
BtgZI	GCGATG	1 cut(s)	228
BtsCI	GGATG	3 cut(s)	400, 856, 952
BtsI	GCAGTG	1 cut(s)	871
BtsIMutI	CAGTG	1 cut(s)	871
Cac8I	GCNNGC	1 cut(s)	904
CfoI	GCGC	1 cut(s)	81
Cfr13I	GGNCC	2 cut(s)	58, 540
CpoI	CGGWCCG	1 cut(s)	58
CseI	GACGC	1 cut(s)	939
Csp6I	GTAC	1 cut(s)	927
CspI	CGGWCCG	1 cut(s)	58
CviAII	CATG	3 cut(s)	638, 903, 980
CviQI	GTAC	1 cut(s)	927
DdeI	CTNAG	2 cut(s)	366, 648
DpnI	GATC	7 cut(s)	111, 123, 199, 301, 802, 960, 969
DpnII	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
DraI	TTTAAA	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	976
EciI	GGCGGA	1 cut(s)	502
Ecl136II	GAGCTC	1 cut(s)	25
Eco147I	AGGCCT	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	80
Eco53kI	GAGCTC	1 cut(s)	25
Eco57I	CTGAAG	2 cut(s)	95, 647
EcoICRI	GAGCTC	1 cut(s)	25
EcoRI	GAATTC	3 cut(s)	259, 316, 778
EcoRII	CCWGG	1 cut(s)	232
EcoT38I	GRGCYC	1 cut(s)	27
FaeI	CATG	3 cut(s)	641, 906, 983
FatI	CATG	3 cut(s)	637, 902, 979
FbaI	TGATCA	1 cut(s)	958
Fnu4HI	GCNGC	5 cut(s)	138, 579, 582, 632, 678
FokI	GGATG	3 cut(s)	407, 863, 959
FriOI	GRGCYC	1 cut(s)	27
Fsp4HI	GCNGC	5 cut(s)	138, 579, 582, 632, 678
FspBI	CTAG	2 cut(s)	440, 807
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	5 cut(s)	138, 579, 582, 632, 678
GsuI	CTGGAG	4 cut(s)	381, 746, 770, 879
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	4 cut(s)	153, 417, 542, 978
HapII	CCGG	5 cut(s)	56, 141, 264, 473, 975
HgaI	GACGC	1 cut(s)	939
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	641, 906, 983
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	6 cut(s)	144, 167, 185, 229, 386, 733
HpaII	CCGG	5 cut(s)	56, 141, 264, 473, 975
HphI	GGTGA	8 cut(s)	233, 257, 296, 302, 350, 356, 515, 566
Hpy188I	TCNGA	8 cut(s)	40, 184, 202, 496, 627, 651, 705, 835
Hpy188III	TCNNGA	3 cut(s)	360, 725, 807
Hpy99I	CGWCG	3 cut(s)	14, 17, 44
HpyAV	CCTTC	7 cut(s)	143, 212, 281, 335, 341, 508, 830
HpyCH4V	TGCA	2 cut(s)	641, 902
HpyF10VI	GCNNNNNNNGC	4 cut(s)	362, 371, 414, 628
HpyF3I	CTNAG	2 cut(s)	366, 648
Hsp92II	CATG	3 cut(s)	641, 906, 983
HspAI	GCGC	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	958
Kzo9I	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
LmnI	GCTCC	4 cut(s)	30, 362, 847, 892
Lsp1109I	GCAGC	4 cut(s)	149, 568, 643, 689
LweI	GCATC	6 cut(s)	343, 426, 550, 565, 631, 937
MaeI	CTAG	2 cut(s)	440, 807
MaeIII	GTNAC	1 cut(s)	853
MalI	GATC	7 cut(s)	111, 123, 199, 301, 802, 960, 969
MboI	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
MboII	GAAGA	7 cut(s)	490, 535, 538, 541, 742, 795, 984
MfeI	CAATTG	1 cut(s)	897
MflI	RGATCY	3 cut(s)	109, 299, 800
MhlI	GDGCHC	2 cut(s)	27, 844
MluCI	AATT	6 cut(s)	259, 316, 720, 778, 885, 897
MlyI	GAGTC	2 cut(s)	194, 395
MmeI	TCCRAC	1 cut(s)	63
MseI	TTAA	3 cut(s)	83, 684, 888
MslI	CAYNNNNRTG	1 cut(s)	984
MspA1I	CMGCKG	1 cut(s)	581
MspI	CCGG	5 cut(s)	56, 141, 264, 473, 975
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	4 cut(s)	362, 371, 414, 628
NdeII	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
NlaIII	CATG	3 cut(s)	641, 906, 983
NlaIV	GGNNCC	2 cut(s)	471, 894
NmuCI	GTSAC	1 cut(s)	853
NspI	RCATGY	1 cut(s)	906
NspV	TTCGAA	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	906
PceI	AGGCCT	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	4 cut(s)	144, 167, 229, 733
PkrI	GCNGC	5 cut(s)	139, 580, 583, 633, 679
PleI	GAGTC	2 cut(s)	193, 394
PpsI	GAGTC	2 cut(s)	193, 394
Psp124BI	GAGCTC	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	471, 894
PspPI	GGNCC	2 cut(s)	58, 540
PsuI	RGATCY	3 cut(s)	109, 299, 800
RsaI	GTAC	1 cut(s)	928
RsaNI	GTAC	1 cut(s)	927
RseI	CAYNNNNRTG	1 cut(s)	984
Rsr2I	CGGWCCG	1 cut(s)	58
RsrII	CGGWCCG	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	27
SaqAI	TTAA	3 cut(s)	83, 684, 888
SatI	GCNGC	5 cut(s)	138, 579, 582, 632, 678
Sau3AI	GATC	7 cut(s)	109, 121, 197, 299, 800, 958, 967
Sau96I	GGNCC	2 cut(s)	58, 540
SchI	GAGTC	2 cut(s)	194, 395
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	27, 844
SfaNI	GCATC	6 cut(s)	343, 426, 550, 565, 631, 937
SfuI	TTCGAA	1 cut(s)	147
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	984
SphI	GCATGC	1 cut(s)	906
Sse9I	AATT	6 cut(s)	259, 316, 720, 778, 885, 897
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	3 cut(s)	487, 501, 579
SspMI	CTAG	2 cut(s)	440, 807
SstI	GAGCTC	1 cut(s)	27
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	232
TaqI	TCGA	5 cut(s)	9, 120, 147, 156, 170
TasI	AATT	6 cut(s)	259, 316, 720, 778, 885, 897
TauI	GCSGC	1 cut(s)	581
TfiI	GAWTC	4 cut(s)	144, 167, 229, 733
Tru1I	TTAA	3 cut(s)	83, 684, 888
Tru9I	TTAA	3 cut(s)	83, 684, 888
TscAI	CASTG	1 cut(s)	871
TseFI	GTSAC	1 cut(s)	853
TseI	GCWGC	4 cut(s)	137, 581, 631, 677
Tsp45I	GTSAC	1 cut(s)	853
TspDTI	ATGAA	7 cut(s)	231, 242, 329, 459, 626, 791, 996
TspGWI	ACGGA	2 cut(s)	50, 826
TspRI	CASTG	1 cut(s)	871
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	3 cut(s)	259, 316, 778
XbaI	TCTAGA	1 cut(s)	806
XceI	RCATGY	1 cut(s)	906
XspI	CTAG	2 cut(s)	440, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.