POT family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g40690 FvH4_2g40690 |
| malus_domestica | MD08G1040500.v1.1 |
| prunus_persica | Prupe.1G389100_v2.0.a1 |
| pyrus_communis | pycom08g03270 |
| rosa_chinensis | RchiOBHm_Chr6g0299911 |
| rosa_laevigata | RLG00000011376 |
| rosa_multiflora | Rmu_co8499763.1_g000001 Rmu_sc0008023.1_g000004 |
| rosa_roxburghii | Rroxscaffold_7G00168280 |
| rosa_rugosa | Rorug06G0293200 |
| rosa_samantha | Rh6AG404500 Rh6BG412800 Rh6CG418900 Rh6DG405700 |
| rosa_wichuraiana | Rw6G035400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 533 |
| Acc36I | ACCTGC | 1 cut(s) | 533 |
| AccB1I | GGYRCC | 1 cut(s) | 164 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1221 |
| AccII | CGCG | 1 cut(s) | 618 |
| AclI | AACGTT | 1 cut(s) | 875 |
| AclWI | GGATC | 6 cut(s) | 14, 326, 520, 682, 937, 950 |
| AcoI | YGGCCR | 1 cut(s) | 1014 |
| AcsI | RAATTY | 3 cut(s) | 495, 558, 909 |
| AcuI | CTGAAG | 1 cut(s) | 548 |
| AcyI | GRCGYC | 1 cut(s) | 174 |
| AfaI | GTAC | 2 cut(s) | 95, 1409 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 71, 103, 197, 337, 1221 |
| AflIII | ACRYGT | 1 cut(s) | 1042 |
| AgsI | TTSAA | 9 cut(s) | 259, 494, 707, 838, 855, 1055, 1230, 1315, 1457 |
| AjnI | CCWGG | 1 cut(s) | 195 |
| AleI | CACNNNNGTG | 2 cut(s) | 308, 1259 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 825, 857 |
| AluBI | AGCT | 6 cut(s) | 185, 252, 290, 718, 1133, 1327 |
| AluI | AGCT | 6 cut(s) | 185, 252, 290, 718, 1133, 1327 |
| Alw21I | GWGCWC | 4 cut(s) | 362, 809, 993, 1256 |
| Alw44I | GTGCAC | 1 cut(s) | 358 |
| AlwI | GGATC | 6 cut(s) | 14, 326, 520, 682, 937, 950 |
| AoxI | GGCC | 4 cut(s) | 56, 192, 847, 1014 |
| ApaLI | GTGCAC | 1 cut(s) | 358 |
| ApeKI | GCWGC | 4 cut(s) | 182, 236, 620, 1133 |
| ApoI | RAATTY | 3 cut(s) | 495, 558, 909 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 332, 364 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 561, 1334 |
| AspLEI | GCGC | 4 cut(s) | 620, 778, 972, 1076 |
| AspS9I | GGNCC | 4 cut(s) | 193, 223, 613, 848 |
| AsuC2I | CCSGG | 3 cut(s) | 846, 940, 952 |
| AsuHPI | GGTGA | 5 cut(s) | 271, 557, 928, 1285, 1448 |
| AsuNHI | GCTAGC | 1 cut(s) | 1301 |
| AvaII | GGWCC | 2 cut(s) | 223, 613 |
| AxyI | CCTNAGG | 1 cut(s) | 228 |
| BaeGI | GKGCMC | 1 cut(s) | 362 |
| BamHI | GGATCC | 1 cut(s) | 942 |
| BanI | GGYRCC | 1 cut(s) | 164 |
| BanII | GRGCYC | 1 cut(s) | 1359 |
| BbsI | GAAGAC | 1 cut(s) | 748 |
| Bbv12I | GWGCWC | 4 cut(s) | 362, 809, 993, 1256 |
| BbvCI | CCTCAGC | 1 cut(s) | 1205 |
| BbvI | GCAGC | 4 cut(s) | 194, 248, 632, 1120 |
| BccI | CCATC | 2 cut(s) | 482, 600 |
| BceAI | ACGGC | 2 cut(s) | 43, 657 |
| BciT130I | CCWGG | 1 cut(s) | 197 |
| BciVI | GTATCC | 2 cut(s) | 461, 948 |
| BcnI | CCSGG | 3 cut(s) | 846, 940, 952 |
| BfaI | CTAG | 3 cut(s) | 986, 1302, 1471 |
| BfmI | CTRYAG | 3 cut(s) | 412, 455, 663 |
| BfuAI | ACCTGC | 1 cut(s) | 533 |
| BfuI | GTATCC | 2 cut(s) | 461, 948 |
| BisI | GCNGC | 7 cut(s) | 172, 183, 237, 621, 1036, 1134, 1288 |
| BlsI | GCNGC | 7 cut(s) | 173, 184, 238, 622, 1037, 1135, 1289 |
| Bme1390I | CCNGG | 4 cut(s) | 197, 846, 940, 952 |
| Bme18I | GGWCC | 2 cut(s) | 223, 613 |
| BmgT120I | GGNCC | 4 cut(s) | 193, 223, 613, 848 |
| BmiI | GGNNCC | 6 cut(s) | 108, 166, 202, 225, 683, 944 |
| BmrFI | CCNGG | 4 cut(s) | 197, 846, 940, 952 |
| BmsI | GCATC | 3 cut(s) | 662, 981, 1403 |
| BmtI | GCTAGC | 1 cut(s) | 1305 |
| BpiI | GAAGAC | 1 cut(s) | 748 |
| BpmI | CTGGAG | 4 cut(s) | 613, 767, 950, 1184 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1205 |
| BpuEI | CTTGAG | 1 cut(s) | 1270 |
| BpuMI | CCSGG | 3 cut(s) | 846, 940, 952 |
| BsaAI | YACGTR | 1 cut(s) | 1045 |
| BsaHI | GRCGYC | 1 cut(s) | 174 |
| BsaJI | CCNNGG | 5 cut(s) | 195, 196, 331, 429, 1005 |
| BsaWI | WCCGGW | 1 cut(s) | 140 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 948, 978, 1368, 1398 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 71, 103, 197, 337, 1221 |
| Bse118I | RCCGGY | 1 cut(s) | 190 |
| Bse1I | ACTGG | 3 cut(s) | 97, 266, 630 |
| Bse21I | CCTNAGG | 1 cut(s) | 228 |
| Bse3DI | GCAATG | 1 cut(s) | 363 |
| BseBI | CCWGG | 1 cut(s) | 197 |
| BseDI | CCNNGG | 5 cut(s) | 195, 196, 331, 429, 1005 |
| BseGI | GGATG | 1 cut(s) | 1200 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 71, 103, 197, 337, 1221 |
| BseMI | GCAATG | 1 cut(s) | 363 |
| BseMII | CTCAG | 4 cut(s) | 492, 1170, 1219, 1372 |
| BseNI | ACTGG | 3 cut(s) | 97, 266, 630 |
| BseRI | GAGGAG | 1 cut(s) | 527 |
| BseSI | GKGCMC | 1 cut(s) | 362 |
| BseXI | GCAGC | 4 cut(s) | 194, 248, 632, 1120 |
| BseYI | CCCAGC | 3 cut(s) | 336, 859, 1105 |
| Bsh1236I | CGCG | 1 cut(s) | 618 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1191 |
| BshFI | GGCC | 4 cut(s) | 58, 194, 849, 1016 |
| BshNI | GGYRCC | 1 cut(s) | 164 |
| BsiEI | CGRYCG | 1 cut(s) | 1191 |
| BsiHKAI | GWGCWC | 4 cut(s) | 362, 809, 993, 1256 |
| BsiSI | CCGG | 6 cut(s) | 141, 191, 846, 939, 951, 1017 |
| BslFI | GGGAC | 2 cut(s) | 353, 1186 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 71, 103, 197, 337, 1221 |
| BsmFI | GGGAC | 2 cut(s) | 353, 1186 |
| BsnI | GGCC | 4 cut(s) | 58, 194, 849, 1016 |
| Bsp1286I | GDGCHC | 5 cut(s) | 362, 809, 993, 1256, 1359 |
| Bsp143I | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| Bsp19I | CCATGG | 2 cut(s) | 331, 1005 |
| BspANI | GGCC | 4 cut(s) | 58, 194, 849, 1016 |
| BspCNI | CTCAG | 4 cut(s) | 493, 1171, 1218, 1371 |
| BspFNI | CGCG | 1 cut(s) | 618 |
| BspHI | TCATGA | 1 cut(s) | 759 |
| BspLI | GGNNCC | 6 cut(s) | 108, 166, 202, 225, 683, 944 |
| BspMI | ACCTGC | 1 cut(s) | 533 |
| BspOI | GCTAGC | 1 cut(s) | 1305 |
| BspPI | GGATC | 6 cut(s) | 14, 326, 520, 682, 937, 950 |
| BspQI | GCTCTTC | 1 cut(s) | 387 |
| BspT107I | GGYRCC | 1 cut(s) | 164 |
| BsrDI | GCAATG | 1 cut(s) | 363 |
| BsrFI | RCCGGY | 1 cut(s) | 190 |
| BsrI | ACTGG | 3 cut(s) | 97, 266, 630 |
| BssAI | RCCGGY | 1 cut(s) | 190 |
| BssECI | CCNNGG | 5 cut(s) | 195, 196, 331, 429, 1005 |
| BssMI | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| BssNI | GRCGYC | 1 cut(s) | 174 |
| BssT1I | CCWWGG | 3 cut(s) | 331, 429, 1005 |
| Bst2UI | CCWGG | 1 cut(s) | 197 |
| Bst4CI | ACNGT | 8 cut(s) | 243, 650, 667, 694, 754, 821, 1258, 1445 |
| Bst6I | CTCTTC | 1 cut(s) | 387 |
| BstACI | GRCGYC | 1 cut(s) | 174 |
| BstBAI | YACGTR | 1 cut(s) | 1045 |
| BstC8I | GCNNGC | 4 cut(s) | 192, 731, 1299, 1303 |
| BstDEI | CTNAG | 8 cut(s) | 10, 53, 228, 446, 501, 1179, 1205, 1358 |
| BstDSI | CCRYGG | 2 cut(s) | 331, 1005 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 69 |
| BstF5I | GGATG | 1 cut(s) | 1200 |
| BstFNI | CGCG | 1 cut(s) | 618 |
| BstHHI | GCGC | 4 cut(s) | 620, 778, 972, 1076 |
| BstKTI | GATC | 6 cut(s) | 9, 321, 528, 577, 677, 945 |
| BstMBI | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| BstMCI | CGRYCG | 1 cut(s) | 1191 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 171, 191, 200, 650, 1111, 1184, 1363 |
| BstNI | CCWGG | 1 cut(s) | 197 |
| BstNSI | RCATGY | 2 cut(s) | 733, 771 |
| BstSCI | CCNGG | 4 cut(s) | 195, 844, 938, 950 |
| BstSFI | CTRYAG | 3 cut(s) | 412, 455, 663 |
| BstSLI | GKGCMC | 1 cut(s) | 362 |
| BstUI | CGCG | 1 cut(s) | 618 |
| BstV1I | GCAGC | 4 cut(s) | 194, 248, 632, 1120 |
| BstV2I | GAAGAC | 1 cut(s) | 748 |
| BstX2I | RGATCY | 3 cut(s) | 6, 525, 942 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1012 |
| BstYI | RGATCY | 3 cut(s) | 6, 525, 942 |
| Bsu36I | CCTNAGG | 1 cut(s) | 228 |
| BsuI | GTATCC | 2 cut(s) | 461, 948 |
| BsuRI | GGCC | 4 cut(s) | 58, 194, 849, 1016 |
| BtgI | CCRYGG | 2 cut(s) | 331, 1005 |
| BtgZI | GCGATG | 1 cut(s) | 958 |
| BtsCI | GGATG | 1 cut(s) | 1200 |
| BtsI | GCAGTG | 1 cut(s) | 1082 |
| BtsIMutI | CAGTG | 9 cut(s) | 104, 589, 637, 672, 690, 750, 1082, 1366, 1450 |
| BveI | ACCTGC | 1 cut(s) | 533 |
| Cac8I | GCNNGC | 4 cut(s) | 192, 731, 1299, 1303 |
| CciI | TCATGA | 1 cut(s) | 759 |
| CfoI | GCGC | 4 cut(s) | 620, 778, 972, 1076 |
| Cfr10I | RCCGGY | 1 cut(s) | 190 |
| Cfr13I | GGNCC | 4 cut(s) | 193, 223, 613, 848 |
| CseI | GACGC | 1 cut(s) | 163 |
| Csp6I | GTAC | 2 cut(s) | 94, 1408 |
| CviQI | GTAC | 2 cut(s) | 94, 1408 |
| DdeI | CTNAG | 8 cut(s) | 10, 53, 228, 446, 501, 1179, 1205, 1358 |
| DpnI | GATC | 6 cut(s) | 8, 320, 527, 576, 676, 944 |
| DpnII | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| EaeI | YGGCCR | 1 cut(s) | 1014 |
| Eam1104I | CTCTTC | 1 cut(s) | 387 |
| EarI | CTCTTC | 1 cut(s) | 387 |
| Eco130I | CCWWGG | 3 cut(s) | 331, 429, 1005 |
| Eco24I | GRGCYC | 1 cut(s) | 1359 |
| Eco47I | GGWCC | 2 cut(s) | 223, 613 |
| Eco57I | CTGAAG | 1 cut(s) | 548 |
| Eco81I | CCTNAGG | 1 cut(s) | 228 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 69 |
| EcoO109I | RGGNCCY | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 195 |
| EcoT14I | CCWWGG | 3 cut(s) | 331, 429, 1005 |
| EcoT22I | ATGCAT | 1 cut(s) | 773 |
| EcoT38I | GRGCYC | 1 cut(s) | 1359 |
| ErhI | CCWWGG | 3 cut(s) | 331, 429, 1005 |
| FaqI | GGGAC | 2 cut(s) | 353, 1186 |
| FauI | CCCGC | 1 cut(s) | 1283 |
| Fnu4HI | GCNGC | 7 cut(s) | 172, 183, 237, 621, 1036, 1134, 1288 |
| FokI | GGATG | 1 cut(s) | 1207 |
| FriOI | GRGCYC | 1 cut(s) | 1359 |
| Fsp4HI | GCNGC | 7 cut(s) | 172, 183, 237, 621, 1036, 1134, 1288 |
| FspBI | CTAG | 3 cut(s) | 986, 1302, 1471 |
| GlaI | GCGC | 4 cut(s) | 619, 777, 971, 1075 |
| GluI | GCNGC | 7 cut(s) | 172, 183, 237, 621, 1036, 1134, 1288 |
| GsaI | CCCAGC | 3 cut(s) | 340, 863, 1109 |
| GsuI | CTGGAG | 4 cut(s) | 613, 767, 950, 1184 |
| HaeIII | GGCC | 4 cut(s) | 58, 194, 849, 1016 |
| HapII | CCGG | 6 cut(s) | 141, 191, 846, 939, 951, 1017 |
| HgaI | GACGC | 1 cut(s) | 163 |
| HhaI | GCGC | 4 cut(s) | 620, 778, 972, 1076 |
| Hin1I | GRCGYC | 1 cut(s) | 174 |
| Hin6I | GCGC | 4 cut(s) | 618, 776, 970, 1074 |
| HinP1I | GCGC | 4 cut(s) | 618, 776, 970, 1074 |
| HincII | GTYRAC | 1 cut(s) | 1069 |
| HindII | GTYRAC | 1 cut(s) | 1069 |
| HinfI | GANTC | 3 cut(s) | 144, 834, 1020 |
| HpaII | CCGG | 6 cut(s) | 141, 191, 846, 939, 951, 1017 |
| HphI | GGTGA | 5 cut(s) | 271, 557, 928, 1285, 1448 |
| Hpy166II | GTNNAC | 4 cut(s) | 360, 548, 1069, 1146 |
| Hpy188I | TCNGA | 4 cut(s) | 567, 605, 833, 1130 |
| Hpy188III | TCNNGA | 7 cut(s) | 500, 760, 784, 895, 1163, 1192, 1249 |
| Hpy8I | GTNNAC | 4 cut(s) | 360, 548, 1069, 1146 |
| Hpy99I | CGWCG | 1 cut(s) | 218 |
| HpyAV | CCTTC | 5 cut(s) | 214, 799, 861, 1427, 1444 |
| HpyCH4III | ACNGT | 8 cut(s) | 243, 650, 667, 694, 754, 821, 1258, 1445 |
| HpyCH4IV | ACGT | 2 cut(s) | 875, 1044 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 171, 191, 200, 650, 1111, 1184, 1363 |
| HpyF3I | CTNAG | 8 cut(s) | 10, 53, 228, 446, 501, 1179, 1205, 1358 |
| HpySE526I | ACGT | 2 cut(s) | 875, 1044 |
| Hsp92I | GRCGYC | 1 cut(s) | 174 |
| HspAI | GCGC | 4 cut(s) | 618, 776, 970, 1074 |
| KroI | GCCGGC | 1 cut(s) | 190 |
| KroNI | GCCGGC | 1 cut(s) | 192 |
| Kzo9I | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| LguI | GCTCTTC | 1 cut(s) | 387 |
| LmnI | GCTCC | 8 cut(s) | 112, 200, 233, 287, 681, 723, 738, 1130 |
| Lsp1109I | GCAGC | 4 cut(s) | 194, 248, 632, 1120 |
| LweI | GCATC | 3 cut(s) | 662, 981, 1403 |
| MaeI | CTAG | 3 cut(s) | 986, 1302, 1471 |
| MaeII | ACGT | 2 cut(s) | 875, 1044 |
| MaeIII | GTNAC | 3 cut(s) | 301, 405, 694 |
| MalI | GATC | 6 cut(s) | 8, 320, 527, 576, 676, 944 |
| MboI | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| MboII | GAAGA | 6 cut(s) | 247, 374, 554, 719, 748, 1162 |
| MfeI | CAATTG | 1 cut(s) | 1230 |
| MflI | RGATCY | 3 cut(s) | 6, 525, 942 |
| MhlI | GDGCHC | 5 cut(s) | 362, 809, 993, 1256, 1359 |
| MluCI | AATT | 9 cut(s) | 495, 558, 578, 593, 909, 1122, 1230, 1309, 1369 |
| MlyI | GAGTC | 2 cut(s) | 138, 1014 |
| MmeI | TCCRAC | 2 cut(s) | 591, 823 |
| MnlI | CCTC | 9 cut(s) | 57, 97, 287, 452, 505, 974, 1214, 1261, 1370 |
| Mph1103I | ATGCAT | 1 cut(s) | 773 |
| MroNI | GCCGGC | 1 cut(s) | 190 |
| MroXI | GAANNNNTTC | 2 cut(s) | 561, 1334 |
| MseI | TTAA | 5 cut(s) | 746, 872, 1368, 1428, 1464 |
| MslI | CAYNNNNRTG | 5 cut(s) | 308, 770, 812, 1010, 1259 |
| MspA1I | CMGCKG | 2 cut(s) | 171, 1287 |
| MspI | CCGG | 6 cut(s) | 141, 191, 846, 939, 951, 1017 |
| MspR9I | CCNGG | 4 cut(s) | 197, 846, 940, 952 |
| MunI | CAATTG | 1 cut(s) | 1230 |
| MvaI | CCWGG | 1 cut(s) | 197 |
| MvnI | CGCG | 1 cut(s) | 618 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 171, 191, 200, 650, 1111, 1184, 1363 |
| NaeI | GCCGGC | 1 cut(s) | 192 |
| NciI | CCSGG | 3 cut(s) | 846, 940, 952 |
| NcoI | CCATGG | 2 cut(s) | 331, 1005 |
| NdeII | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| NgoMIV | GCCGGC | 1 cut(s) | 190 |
| NheI | GCTAGC | 1 cut(s) | 1301 |
| NlaIV | GGNNCC | 6 cut(s) | 108, 166, 202, 225, 683, 944 |
| NmuCI | GTSAC | 3 cut(s) | 301, 405, 694 |
| NsiI | ATGCAT | 1 cut(s) | 773 |
| NspI | RCATGY | 2 cut(s) | 733, 771 |
| OliI | CACNNNNGTG | 2 cut(s) | 308, 1259 |
| PaeI | GCATGC | 1 cut(s) | 733 |
| PagI | TCATGA | 1 cut(s) | 759 |
| PaqCI | CACCTGC | 1 cut(s) | 533 |
| PasI | CCCWGGG | 1 cut(s) | 196 |
| PciSI | GCTCTTC | 1 cut(s) | 387 |
| PdiI | GCCGGC | 1 cut(s) | 192 |
| PdmI | GAANNNNTTC | 2 cut(s) | 561, 1334 |
| PfeI | GAWTC | 1 cut(s) | 834 |
| PflFI | GACNNNGTC | 1 cut(s) | 18 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1221 |
| PkrI | GCNGC | 7 cut(s) | 173, 184, 238, 622, 1037, 1135, 1289 |
| PleI | GAGTC | 2 cut(s) | 138, 1014 |
| PpsI | GAGTC | 2 cut(s) | 138, 1014 |
| Ppu21I | YACGTR | 1 cut(s) | 1045 |
| PpuMI | RGGWCCY | 1 cut(s) | 223 |
| Psp1406I | AACGTT | 1 cut(s) | 875 |
| Psp5II | RGGWCCY | 1 cut(s) | 223 |
| Psp6I | CCWGG | 1 cut(s) | 195 |
| PspFI | CCCAGC | 3 cut(s) | 336, 859, 1105 |
| PspGI | CCWGG | 1 cut(s) | 195 |
| PspN4I | GGNNCC | 6 cut(s) | 108, 166, 202, 225, 683, 944 |
| PspPI | GGNCC | 4 cut(s) | 193, 223, 613, 848 |
| PspPPI | RGGWCCY | 1 cut(s) | 223 |
| PsuI | RGATCY | 3 cut(s) | 6, 525, 942 |
| PsyI | GACNNNGTC | 1 cut(s) | 18 |
| RsaI | GTAC | 2 cut(s) | 95, 1409 |
| RsaNI | GTAC | 2 cut(s) | 94, 1408 |
| RseI | CAYNNNNRTG | 5 cut(s) | 308, 770, 812, 1010, 1259 |
| SapI | GCTCTTC | 1 cut(s) | 387 |
| SaqAI | TTAA | 5 cut(s) | 746, 872, 1368, 1428, 1464 |
| SatI | GCNGC | 7 cut(s) | 172, 183, 237, 621, 1036, 1134, 1288 |
| Sau3AI | GATC | 6 cut(s) | 6, 318, 525, 574, 674, 942 |
| Sau96I | GGNCC | 4 cut(s) | 193, 223, 613, 848 |
| SchI | GAGTC | 2 cut(s) | 138, 1014 |
| ScrFI | CCNGG | 4 cut(s) | 197, 846, 940, 952 |
| SduI | GDGCHC | 5 cut(s) | 362, 809, 993, 1256, 1359 |
| SfaNI | GCATC | 3 cut(s) | 662, 981, 1403 |
| SfcI | CTRYAG | 3 cut(s) | 412, 455, 663 |
| SinI | GGWCC | 2 cut(s) | 223, 613 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 308, 770, 812, 1010, 1259 |
| SmlI | CTYRAG | 1 cut(s) | 1249 |
| SmoI | CTYRAG | 1 cut(s) | 1249 |
| SphI | GCATGC | 1 cut(s) | 733 |
| Sse9I | AATT | 9 cut(s) | 495, 558, 578, 593, 909, 1122, 1230, 1309, 1369 |
| SspMI | CTAG | 3 cut(s) | 986, 1302, 1471 |
| StyD4I | CCNGG | 4 cut(s) | 195, 844, 938, 950 |
| StyI | CCWWGG | 3 cut(s) | 331, 429, 1005 |
| TaaI | ACNGT | 8 cut(s) | 243, 650, 667, 694, 754, 821, 1258, 1445 |
| TaiI | ACGT | 2 cut(s) | 878, 1047 |
| TaqI | TCGA | 1 cut(s) | 928 |
| TasI | AATT | 9 cut(s) | 495, 558, 578, 593, 909, 1122, 1230, 1309, 1369 |
| TatI | WGTACW | 1 cut(s) | 1407 |
| TauI | GCSGC | 3 cut(s) | 174, 1038, 1290 |
| TfiI | GAWTC | 1 cut(s) | 834 |
| Tru1I | TTAA | 5 cut(s) | 746, 872, 1368, 1428, 1464 |
| Tru9I | TTAA | 5 cut(s) | 746, 872, 1368, 1428, 1464 |
| TscAI | CASTG | 9 cut(s) | 104, 589, 637, 672, 697, 757, 1089, 1366, 1450 |
| TseFI | GTSAC | 3 cut(s) | 301, 405, 694 |
| TseI | GCWGC | 4 cut(s) | 182, 236, 620, 1133 |
| Tsp45I | GTSAC | 3 cut(s) | 301, 405, 694 |
| TspDTI | ATGAA | 7 cut(s) | 570, 606, 748, 776, 830, 868, 1211 |
| TspRI | CASTG | 9 cut(s) | 104, 589, 637, 672, 697, 757, 1089, 1366, 1450 |
| Tth111I | GACNNNGTC | 1 cut(s) | 18 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1221 |
| VneI | GTGCAC | 1 cut(s) | 358 |
| VpaK11BI | GGWCC | 2 cut(s) | 223, 613 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 69 |
| XapI | RAATTY | 3 cut(s) | 495, 558, 909 |
| XceI | RCATGY | 2 cut(s) | 733, 771 |
| XmnI | GAANNNNTTC | 2 cut(s) | 561, 1334 |
| XspI | CTAG | 3 cut(s) | 986, 1302, 1471 |
| Zsp2I | ATGCAT | 1 cut(s) | 773 |