Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8499763.1

Orthogroup ID

OG0015565

Physical Location & Seq

Genomic Coordinates Forward (+)

167 .. 889

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8499763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgaacacatgcttggcacaactccaaactttctccatccaacaaagcctgaccttggacagacatttcattggcttcgaaatccccggcccatcaatcccagtcatccctctgctctgcatgtttttcctcatcccaatctacgaccgagtcttcgtcccactcgtcagaaaactcaccggaattcccaccggcattcgccacctacagcgtattgcagttgggctcgtgctctccgtgatttcaatggccatttccggaatggtagagactcgccgcaaatcagtggccgtgaaacacaacatggtcgactccagtgagcctctgccaatgagtgtgttttggcttggtttccaatttgccatatttggggccgcagacatgttcacagtagtcggtcttttggaattcttctatgctgagagcgcggcagggatgaagtcgctgggcacagccatctcttggtgttcgatagcgtttgggtatttcttgagctcggtggtggtggagacggtgaacaaagtgagcggagggtggttggcaagtaataatctcaatagagacaagttgaactacttctattggttgctgtcagggatgagtgtgatgaactttggggcatatttgctctgtgcatattggtacaagtacaaaaaggtcgatgcagtggtgctggacaagcaaggcgattccgatggcggtgttgaaataatcaaagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005319 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0010119 GO:0010876 GO:0015075 GO:0015318 GO:0015665 GO:0015711 GO:0015718 GO:0015849 GO:0015850 GO:0016020 GO:0022857 GO:0033036 GO:0034220 GO:0043207 GO:0044464 GO:0046864 GO:0046865 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0080168 GO:0090440 GO:0098656 GO:1901618 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

240

Amino Acids

26.61

Weight (kDa)

8.63

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40690 FvH4_2g40690
malus_domestica	MD08G1040500.v1.1
prunus_persica	Prupe.1G389100_v2.0.a1
pyrus_communis	pycom08g03270
rosa_chinensis	RchiOBHm_Chr6g0299911
rosa_laevigata	RLG00000011376
rosa_multiflora	Rmu_co8499763.1_g000001 Rmu_sc0008023.1_g000004
rosa_roxburghii	Rroxscaffold_7G00168280
rosa_rugosa	Rorug06G0293200
rosa_samantha	Rh6AG404500 Rh6BG412800 Rh6CG418900 Rh6DG405700
rosa_wichuraiana	Rw6G035400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	462
AccBSI	CCGCTC	1 cut(s)	528
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	1 cut(s)	428
AccIII	TCCGGA	1 cut(s)	257
AciI	CCGC	5 cut(s)	277, 375, 428, 528, 699
AcoI	YGGCCR	2 cut(s)	249, 288
AcsI	RAATTY	2 cut(s)	183, 407
AfaI	GTAC	2 cut(s)	644, 650
AfiI	CCNNNNNNNGG	3 cut(s)	55, 369, 462
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	3 cut(s)	246, 571, 707
AjuI	GAANNNNNNNTTGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	495
AluI	AGCT	1 cut(s)	495
Alw21I	GWGCWC	2 cut(s)	234, 497
Alw26I	GTCTC	3 cut(s)	263, 503, 555
Aor13HI	TCCGGA	1 cut(s)	257
AoxI	GGCC	4 cut(s)	88, 249, 288, 372
ApoI	RAATTY	2 cut(s)	183, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	137, 169
Asp700I	GAANNNNTTC	1 cut(s)	575
AspLEI	GCGC	1 cut(s)	428
AspS9I	GGNCC	2 cut(s)	89, 372
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	2 cut(s)	169, 526
AsuII	TTCGAA	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	228, 497
BauI	CACGAG	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	2 cut(s)	234, 497
BccI	CCATC	4 cut(s)	44, 100, 464, 689
BceAI	ACGGC	1 cut(s)	275
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	3 cut(s)	263, 503, 555
BfmI	CTRYAG	1 cut(s)	206
BisI	GCNGC	3 cut(s)	277, 375, 429
BlsI	GCNGC	3 cut(s)	278, 376, 430
Bme1390I	CCNGG	1 cut(s)	87
BmgT120I	GGNCC	2 cut(s)	89, 372
BmiI	GGNNCC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	652
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	298
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	54, 85
BsaWI	WCCGGW	2 cut(s)	179, 257
Bsc4I	CCNNNNNNNGG	3 cut(s)	55, 369, 462
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	101, 315
BseAI	TCCGGA	1 cut(s)	257
BseDI	CCNNGG	2 cut(s)	54, 85
BseGI	GGATG	5 cut(s)	36, 105, 132, 441, 603
BseLI	CCNNNNNNNGG	3 cut(s)	55, 369, 462
BseMII	CTCAG	1 cut(s)	411
BseNI	ACTGG	2 cut(s)	101, 315
BseSI	GKGCMC	1 cut(s)	452
BseYI	CCCAGC	1 cut(s)	445
Bsh1236I	CGCG	1 cut(s)	428
Bsh1285I	CGRYCG	1 cut(s)	148
BshFI	GGCC	4 cut(s)	90, 251, 290, 374
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	2 cut(s)	234, 497
BsiSI	CCGG	4 cut(s)	87, 180, 192, 258
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	3 cut(s)	55, 369, 462
BsmAI	GTCTC	3 cut(s)	263, 503, 555
BsmBI	CGTCTC	1 cut(s)	503
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	4 cut(s)	90, 251, 290, 374
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1286I	GDGCHC	4 cut(s)	228, 234, 452, 497
Bsp13I	TCCGGA	1 cut(s)	257
BspACI	CCGC	5 cut(s)	277, 375, 428, 528, 699
BspANI	GGCC	4 cut(s)	90, 251, 290, 374
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	257
BspFNI	CGCG	1 cut(s)	428
BspLI	GGNNCC	1 cut(s)	373
BspT104I	TTCGAA	1 cut(s)	78
BsrBI	CCGCTC	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	2 cut(s)	101, 315
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	54, 85
BssSI	CACGAG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	54
Bst2BI	CACGAG	1 cut(s)	227
Bst4CI	ACNGT	2 cut(s)	391, 514
BstBI	TTCGAA	1 cut(s)	78
BstDEI	CTNAG	1 cut(s)	420
BstF5I	GGATG	5 cut(s)	36, 105, 132, 441, 603
BstFNI	CGCG	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	428
BstMAI	GTCTC	3 cut(s)	263, 503, 555
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 679
BstNSI	RCATGY	3 cut(s)	12, 124, 385
BstSCI	CCNGG	1 cut(s)	85
BstSFI	CTRYAG	1 cut(s)	206
BstSLI	GKGCMC	1 cut(s)	452
BstUI	CGCG	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	145
BsuRI	GGCC	4 cut(s)	90, 251, 290, 374
BtsCI	GGATG	5 cut(s)	36, 105, 132, 441, 603
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	3 cut(s)	291, 322, 672
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	89, 372
Csp6I	GTAC	2 cut(s)	643, 649
CviAII	CATG	4 cut(s)	9, 121, 304, 382
CviQI	GTAC	2 cut(s)	643, 649
DdeI	CTNAG	1 cut(s)	420
EaeI	YGGCCR	2 cut(s)	249, 288
Ecl136II	GAGCTC	1 cut(s)	495
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	2 cut(s)	228, 497
Eco53kI	GAGCTC	1 cut(s)	495
EcoICRI	GAGCTC	1 cut(s)	495
EcoRI	GAATTC	2 cut(s)	183, 407
EcoT14I	CCWWGG	1 cut(s)	54
EcoT38I	GRGCYC	2 cut(s)	228, 497
ErhI	CCWWGG	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	503
FaeI	CATG	4 cut(s)	12, 124, 307, 385
FaiI	YATR	8 cut(s)	10, 122, 305, 365, 383, 417, 622, 637
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	4 cut(s)	8, 120, 303, 381
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	277, 375, 429
FokI	GGATG	5 cut(s)	23, 92, 119, 448, 610
FriOI	GRGCYC	2 cut(s)	228, 497
Fsp4HI	GCNGC	3 cut(s)	277, 375, 429
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	3 cut(s)	277, 375, 429
GsaI	CCCAGC	1 cut(s)	449
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	4 cut(s)	90, 251, 290, 374
HapII	CCGG	4 cut(s)	87, 180, 192, 258
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	4 cut(s)	12, 124, 307, 385
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HincII	GTYRAC	1 cut(s)	310
HindII	GTYRAC	1 cut(s)	310
HinfI	GANTC	4 cut(s)	150, 271, 311, 689
HpaII	CCGG	4 cut(s)	87, 180, 192, 258
HphI	GGTGA	2 cut(s)	169, 526
Hpy166II	GTNNAC	3 cut(s)	310, 387, 517
Hpy188I	TCNGA	2 cut(s)	170, 694
Hpy188III	TCNNGA	2 cut(s)	258, 490
Hpy8I	GTNNAC	3 cut(s)	310, 387, 517
HpyCH4III	ACNGT	2 cut(s)	391, 514
HpyCH4V	TGCA	4 cut(s)	120, 218, 635, 665
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 679
HpyF3I	CTNAG	1 cut(s)	420
Hsp92II	CATG	4 cut(s)	12, 124, 307, 385
HspAI	GCGC	1 cut(s)	426
Kpn2I	TCCGGA	1 cut(s)	257
LweI	GCATC	1 cut(s)	652
MbiI	CCGCTC	1 cut(s)	528
MboII	GAAGA	2 cut(s)	145, 403
MhlI	GDGCHC	4 cut(s)	228, 234, 452, 497
MlsI	TGGCCA	1 cut(s)	251
MluCI	AATT	3 cut(s)	183, 356, 407
MluNI	TGGCCA	1 cut(s)	251
MlyI	GAGTC	3 cut(s)	159, 265, 305
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	4 cut(s)	120, 140, 333, 524
Mox20I	TGGCCA	1 cut(s)	251
MroI	TCCGGA	1 cut(s)	257
MroXI	GAANNNNTTC	1 cut(s)	575
MscI	TGGCCA	1 cut(s)	251
Msp20I	TGGCCA	1 cut(s)	251
MspI	CCGG	4 cut(s)	87, 180, 192, 258
MspR9I	CCNGG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	1 cut(s)	428
MwoI	GCNNNNNNNGC	2 cut(s)	425, 679
NciI	CCSGG	1 cut(s)	87
NlaIII	CATG	4 cut(s)	12, 124, 307, 385
NlaIV	GGNNCC	1 cut(s)	373
NspI	RCATGY	3 cut(s)	12, 124, 385
NspV	TTCGAA	1 cut(s)	78
PciI	ACATGT	1 cut(s)	381
PcsI	WCGNNNNNNNCGW	2 cut(s)	162, 234
PctI	GAATGC	1 cut(s)	195
PdmI	GAANNNNTTC	1 cut(s)	575
PfeI	GAWTC	1 cut(s)	689
PflFI	GACNNNGTC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	462
PkrI	GCNGC	3 cut(s)	278, 376, 430
PleI	GAGTC	3 cut(s)	158, 265, 305
PpsI	GAGTC	3 cut(s)	158, 265, 305
PscI	ACATGT	1 cut(s)	381
Psp124BI	GAGCTC	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	445
PspN4I	GGNNCC	1 cut(s)	373
PspPI	GGNCC	2 cut(s)	89, 372
PsyI	GACNNNGTC	1 cut(s)	149
RsaI	GTAC	2 cut(s)	644, 650
RsaNI	GTAC	2 cut(s)	643, 649
SacI	GAGCTC	1 cut(s)	497
SalI	GTCGAC	1 cut(s)	308
SatI	GCNGC	3 cut(s)	277, 375, 429
Sau96I	GGNCC	2 cut(s)	89, 372
SchI	GAGTC	3 cut(s)	159, 265, 305
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	4 cut(s)	228, 234, 452, 497
SetI	ASST	4 cut(s)	56, 207, 497, 660
SfaNI	GCATC	1 cut(s)	652
SfcI	CTRYAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	78
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	3 cut(s)	183, 356, 407
SsiI	CCGC	5 cut(s)	277, 375, 428, 528, 699
SstI	GAGCTC	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	391, 514
TaqI	TCGA	4 cut(s)	78, 309, 470, 660
TaqII	GACCGA	2 cut(s)	162, 386
TasI	AATT	3 cut(s)	183, 356, 407
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	3 cut(s)	279, 377, 431
TfiI	GAWTC	1 cut(s)	689
TscAI	CASTG	3 cut(s)	291, 322, 672
TspDTI	ATGAA	4 cut(s)	17, 58, 452, 623
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	3 cut(s)	291, 322, 672
Tth111I	GACNNNGTC	1 cut(s)	149
Van91I	CCANNNNNTGG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	183, 407
XceI	RCATGY	3 cut(s)	12, 124, 385
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	575

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.