Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Reverse (-)

44534743 .. 44536706

Gene Structure 1964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0293200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTATCCTAAGGTGAGAGTGAGGGTGCATCAACAAGAAAATCATATTCCTCCACAAAATGATCACAGGAGAGTACCGGTGACGAAGGTCTCTGATGAATCTCTATCTATACCAGTGAAGGAGACTCAAGGCTGTTCTCTACCATTGAAACCCAGAATCATGAAGGCTTCTGTACCTAAGGTACCAGCAGGACAGCCACTTTCTTCATCTAAAGAGAAGAGCAGACATCTTGACAAGGATGCAAAACCAGATGTTAGAACTTGTTCTGCAGTACAGCCGCGTCCTCGTGCAGTCTTATCTAGTCCTGACAATGATGGGATGATTGGACTAGTAAACAAGCTAATTGATAAGCAACCTTCTGCTTTCAAGGTGCATAACACAAAGGAGAGGGTACCTGCTGCCCAAAGGCAACAGAGTAAGACATCCCCAAGTCCTATGAGCAGGACCAAAGGCTCCAATAGAGCAGTGTCTAACAAGACTGGTCTTGTGCAAAGTAAAGTGCAAAAGACCATGATTGGAAAACAGCAGCAAGCAAGTGTTGGAATAGGGAAATCAAGATTCACTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

189

Amino Acids

20.78

Weight (kDa)

10.7

Isoelectric Point (pI)

56.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	403
Acc65I	GGTACC	2 cut(s)	181, 391
AccB1I	GGYRCC	2 cut(s)	181, 391
AccII	CGCG	1 cut(s)	280
AciI	CCGC	1 cut(s)	278
AfaI	GTAC	5 cut(s)	75, 174, 183, 273, 393
AgeI	ACCGGT	1 cut(s)	76
AgsI	TTSAA	2 cut(s)	148, 367
AhlI	ACTAGT	1 cut(s)	328
AluBI	AGCT	1 cut(s)	340
AluI	AGCT	1 cut(s)	340
Alw26I	GTCTC	2 cut(s)	94, 116
ApeKI	GCWGC	2 cut(s)	398, 526
AsiGI	ACCGGT	1 cut(s)	76
Asp700I	GAANNNNTTC	1 cut(s)	262
Asp718I	GGTACC	2 cut(s)	181, 391
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	2 cut(s)	25, 91
AvaII	GGWCC	1 cut(s)	444
AxyI	CCTNAGG	2 cut(s)	9, 177
BanI	GGYRCC	2 cut(s)	181, 391
BauI	CACGAG	1 cut(s)	285
BbvI	GCAGC	2 cut(s)	385, 538
BccI	CCATC	1 cut(s)	308
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	2 cut(s)	94, 116
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	2 cut(s)	300, 329
BfmI	CTRYAG	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	403
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	3 cut(s)	278, 399, 527
BlsI	GCNGC	3 cut(s)	279, 400, 528
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	3 cut(s)	183, 393, 454
BmsI	GCATC	2 cut(s)	37, 229
BoxI	GACNNNNGTC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	76
Bse118I	RCCGGY	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	113, 484
Bse21I	CCTNAGG	2 cut(s)	9, 177
BseGI	GGATG	3 cut(s)	244, 324, 422
BseNI	ACTGG	2 cut(s)	113, 484
BseXI	GCAGC	2 cut(s)	385, 538
BsgI	GTGCAG	1 cut(s)	309
Bsh1236I	CGCG	1 cut(s)	280
BshNI	GGYRCC	2 cut(s)	181, 391
BshTI	ACCGGT	1 cut(s)	76
BsiSI	CCGG	1 cut(s)	77
BsmAI	GTCTC	2 cut(s)	94, 116
Bso31I	GGTCTC	1 cut(s)	94
Bsp143I	GATC	1 cut(s)	61
BspACI	CCGC	1 cut(s)	278
BspFNI	CGCG	1 cut(s)	280
BspHI	TCATGA	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	183, 393, 454
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	1 cut(s)	403
BspQI	GCTCTTC	1 cut(s)	212
BspT107I	GGYRCC	2 cut(s)	181, 391
BspTNI	GGTCTC	1 cut(s)	94
BsrFI	RCCGGY	1 cut(s)	76
BsrI	ACTGG	2 cut(s)	113, 484
BssAI	RCCGGY	1 cut(s)	76
BssMI	GATC	1 cut(s)	61
BssSI	CACGAG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	531
BstDEI	CTNAG	2 cut(s)	9, 177
BstF5I	GGATG	3 cut(s)	244, 324, 422
BstFNI	CGCG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	94, 116
BstMBI	GATC	1 cut(s)	61
BstPAI	GACNNNNGTC	1 cut(s)	86
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	280
BstV1I	GCAGC	2 cut(s)	385, 538
Bsu36I	CCTNAGG	2 cut(s)	9, 177
BsuI	GTATCC	1 cut(s)	15
BtsCI	GGATG	3 cut(s)	244, 324, 422
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	120, 471
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	531
CciI	TCATGA	1 cut(s)	159
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	1 cut(s)	269
Csp6I	GTAC	5 cut(s)	74, 173, 182, 272, 392
CspAI	ACCGGT	1 cut(s)	76
CviAII	CATG	2 cut(s)	160, 511
CviJI	RGCY	6 cut(s)	132, 167, 196, 277, 340, 453
CviKI_1	RGCY	6 cut(s)	132, 167, 196, 277, 340, 453
CviQI	GTAC	5 cut(s)	74, 173, 182, 272, 392
DdeI	CTNAG	2 cut(s)	9, 177
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	1 cut(s)	444
Eco81I	CCTNAGG	2 cut(s)	9, 177
FaeI	CATG	2 cut(s)	163, 514
FaiI	YATR	6 cut(s)	45, 110, 161, 375, 437, 512
FatI	CATG	2 cut(s)	159, 510
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	3 cut(s)	278, 399, 527
FokI	GGATG	3 cut(s)	251, 331, 409
Fsp4HI	GCNGC	3 cut(s)	278, 399, 527
FspBI	CTAG	2 cut(s)	300, 329
GluI	GCNGC	3 cut(s)	278, 399, 527
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	163, 514
HinfI	GANTC	4 cut(s)	98, 124, 156, 558
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	25, 91
Hpy166II	GTNNAC	1 cut(s)	334
Hpy188I	TCNGA	1 cut(s)	94
Hpy188III	TCNNGA	4 cut(s)	160, 230, 305, 555
Hpy8I	GTNNAC	1 cut(s)	334
HpyAV	CCTTC	4 cut(s)	79, 112, 157, 366
HpyCH4V	TGCA	7 cut(s)	28, 242, 269, 290, 373, 490, 502
HpyF3I	CTNAG	2 cut(s)	9, 177
Hsp92II	CATG	2 cut(s)	163, 514
KpnI	GGTACC	2 cut(s)	185, 395
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	61
LguI	GCTCTTC	1 cut(s)	212
LmnI	GCTCC	1 cut(s)	458
Lsp1109I	GCAGC	2 cut(s)	385, 538
LweI	GCATC	2 cut(s)	37, 229
MaeI	CTAG	2 cut(s)	300, 329
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	2 cut(s)	195, 229
MluCI	AATT	1 cut(s)	342
MlyI	GAGTC	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	4 cut(s)	15, 60, 294, 381
MroXI	GAANNNNTTC	1 cut(s)	262
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	1 cut(s)	280
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	2 cut(s)	163, 514
NlaIV	GGNNCC	3 cut(s)	183, 393, 454
NmuCI	GTSAC	1 cut(s)	79
PagI	TCATGA	1 cut(s)	159
PciSI	GCTCTTC	1 cut(s)	212
PdmI	GAANNNNTTC	1 cut(s)	262
PfeI	GAWTC	3 cut(s)	98, 156, 558
PinAI	ACCGGT	1 cut(s)	76
PkrI	GCNGC	3 cut(s)	279, 400, 528
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	86
PspN4I	GGNNCC	3 cut(s)	183, 393, 454
PspPI	GGNCC	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	5 cut(s)	75, 174, 183, 273, 393
RsaNI	GTAC	5 cut(s)	74, 173, 182, 272, 392
SapI	GCTCTTC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	278, 399, 527
Sau3AI	GATC	1 cut(s)	61
Sau96I	GGNCC	1 cut(s)	444
SchI	GAGTC	1 cut(s)	118
SetI	ASST	8 cut(s)	15, 90, 178, 183, 342, 358, 372, 397
SfaNI	GCATC	2 cut(s)	37, 229
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	1 cut(s)	342
SsiI	CCGC	1 cut(s)	278
SspMI	CTAG	2 cut(s)	300, 329
TasI	AATT	1 cut(s)	342
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	98, 156, 558
TscAI	CASTG	2 cut(s)	120, 471
TseFI	GTSAC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	398, 526
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	111, 176, 195
TspRI	CASTG	2 cut(s)	120, 471
VpaK11BI	GGWCC	1 cut(s)	444
XmnI	GAANNNNTTC	1 cut(s)	262
XspI	CTAG	2 cut(s)	300, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.