AT5G25900

Belongs to the cytochrome P450 family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9035817 .. 9038423
2607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25900.1

Sequence Viewer

Length: 1530 bp
ATGGCCTTCTTCTCCATGATCTCCATTCTCCTTGGCTTTGTTATCTCCTCCTTCATCTTCATCTTCTTCTTCAAGAAACTTCTCTCCTTCTCCAGAAAGAACATGTCTGAAGTCTCCACTCTCCCCTCTGTTCCAGTGGTACCAGGGTTTCCTGTTATTGGGAACTTGCTGCAACTAAAAGAGAAGAAACCTCACAAGACTTTCACTAGATGGTCAGAGATTTATGGTCCTATTTACTCTATAAAGATGGGTTCTTCTTCTCTTATTGTCCTCAATTCTACTGAGACTGCCAAAGAGGCCATGGTGACGCGGTTTTCGTCTATCTCAACGAGGAAGTTGTCAAATGCGTTGACAGTCCTTACTTGTGACAAATCTATGGTTGCTACTAGTGATTATGATGATTTCCACAAGTTGGTGAAACGGTGTCTCTTGAACGGTCTTTTGGGTGCTAATGCACAGAAACGAAAAAGACATTACAGAGATGCACTCATTGAAAATGTGTCTTCCAAGTTGCATGCCCATGCTAGGGACCATCCACAAGAACCTGTAAACTTCAGAGCTATATTTGAGCATGAGCTTTTCGGTGTAGCATTGAAGCAAGCTTTTGGGAAAGATGTGGAATCCATTTATGTTAAAGAACTCGGTGTGACTTTGTCGAAAGACGAGATCTTCAAGGTTTTAGTACATGACATGATGGAAGGTGCAATTGATGTTGATTGGAGAGACTTCTTCCCATACTTGAAATGGATTCCAAATAAAAGTTTTGAAGCAAGAATCCAGCAAAAGCATAAACGTAGACTCGCAGTGATGAATGCTCTGATTCAAGATCGACTGAAGCAGAATGGTTCAGAATCGGATGATGATTGCTATCTCAACTTCTTGATGTCGGAAGCGAAAACACTAACCAAGGAGCAAATTGCTATCTTGGTTTGGGAGACGATTATCGAGACAGCTGACACTACTTTGGTTACAACTGAATGGGCCATCTATGAGCTCGCTAAGCATCCAAGTGTCCAAGATCGTCTGTGCAAAGAAATCCAAAATGTCTGCGGAGGAGAAAAGTTCAAAGAAGAGCAATTGTCTCAAGTTCCTTATCTCAATGGAGTCTTTCATGAAACGCTTAGGAAATACAGTCCTGCTCCTCTAGTTCCCATTCGCTACGCCCACGAGGATACGCAAATCGGAGGCTATCATGTCCCTGCAGGAAGTGAGATTGCAATAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGACTGGTGGCCGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACAAGACAATGGCGTTTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCTCTTCAAGCATCTCTCATGGCAGGCATTGCTATTGGAAGATTAGTGCAAGAATTCGAGTGGAAGCTTAGAGATGGCGAAGAAGAGAATGTGGATACATATGGCTTGACCTCTCAGAAGCTTTATCCTCTTATGGCTATTATCAATCCAAGGCGTTCTTAA

Protein Analysis

509

Amino Acids

58.16

Weight (kDa)

8.27

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 47 - 488 1.2e-78 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 139
AccB1I GGYRCC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 412
AccBSI CCGCTC 2 cut(s) 1285, 1346
AccI GTMKAC 1 cut(s) 796
AccII CGCG 1 cut(s) 310
AciI CCGC 4 cut(s) 310, 1050, 1285, 1346
AcoI YGGCCR 1 cut(s) 1277
AcsI RAATTY 1 cut(s) 1421
AcuI CTGAAG 3 cut(s) 129, 538, 854
AfaI GTAC 2 cut(s) 141, 684
AfiI CCNNNNNNNGG 4 cut(s) 158, 412, 525, 526
AflIII ACRYGT 1 cut(s) 102
AhlI ACTAGT 1 cut(s) 386
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 7 cut(s) 560, 577, 602, 953, 994, 1435, 1489
AluI AGCT 7 cut(s) 560, 577, 602, 953, 994, 1435, 1489
Alw21I GWGCWC 2 cut(s) 996, 1372
Alw26I GTCTC 8 cut(s) 118, 278, 431, 717, 929, 941, 1086, 1255
AoxI GGCC 4 cut(s) 3, 297, 981, 1277
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 1421
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
Asp718I GGTACC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 227, 529, 981
AsuHPI GGTGA 2 cut(s) 316, 427
AvaII GGWCC 2 cut(s) 227, 529
BaeI ACNNNNGTAYC 2 cut(s) 131, 164
BanI GGYRCC 1 cut(s) 139
BanII GRGCYC 1 cut(s) 996
BauI CACGAG 1 cut(s) 1166
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 996, 1372
BbvI GCAGC 1 cut(s) 156
BccI CCATC 7 cut(s) 204, 241, 540, 688, 992, 1292, 1436
BciT130I CCWGG 1 cut(s) 144
BciVI GTATCC 2 cut(s) 1165, 1456
BcoDI GTCTC 8 cut(s) 118, 278, 431, 717, 929, 941, 1086, 1255
BcuI ACTAGT 1 cut(s) 386
BfaI CTAG 4 cut(s) 207, 387, 525, 1145
BfmI CTRYAG 1 cut(s) 1200
BfuI GTATCC 2 cut(s) 1165, 1456
BglI GCCNNNNNGGC 1 cut(s) 296
BglII AGATCT 2 cut(s) 666, 1318
BisI GCNGC 1 cut(s) 170
BlpI GCTNAGC 1 cut(s) 999
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 2 cut(s) 227, 529
BmgT120I GGNCC 3 cut(s) 227, 529, 981
BmiI GGNNCC 2 cut(s) 141, 530
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 4 cut(s) 472, 1012, 1223, 1388
BpiI GAAGAC 1 cut(s) 495
BplI GAGNNNNNCTC 2 cut(s) 471, 503
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 1121
Bpu1102I GCTNAGC 1 cut(s) 999
BpuEI CTTGAG 1 cut(s) 1068
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 1 cut(s) 1255
BsaJI CCNNGG 5 cut(s) 31, 143, 300, 906, 1517
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 412, 525, 526
Bse1I ACTGG 2 cut(s) 134, 1277
Bse3DI GCAATG 1 cut(s) 1395
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 5 cut(s) 31, 143, 300, 906, 1517
BseGI GGATG 4 cut(s) 532, 862, 1003, 1238
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 4 cut(s) 158, 412, 525, 526
BseMI GCAATG 1 cut(s) 1395
BseMII CTCAG 2 cut(s) 273, 1496
BseNI ACTGG 2 cut(s) 134, 1277
BseRI GAGGAG 3 cut(s) 37, 1068, 1131
BseXI GCAGC 1 cut(s) 156
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 4 cut(s) 5, 299, 983, 1279
BshNI GGYRCC 1 cut(s) 139
BsiHKAI GWGCWC 2 cut(s) 996, 1372
BsiSI CCGG 1 cut(s) 1280
BslFI GGGAC 2 cut(s) 542, 1181
BslI CCNNNNNNNGG 4 cut(s) 158, 412, 525, 526
BsmAI GTCTC 8 cut(s) 118, 278, 431, 717, 929, 941, 1086, 1255
BsmBI CGTCTC 1 cut(s) 929
BsmFI GGGAC 2 cut(s) 542, 1181
BsmI GAATGC 1 cut(s) 817
BsnI GGCC 4 cut(s) 5, 299, 983, 1279
Bso31I GGTCTC 1 cut(s) 1255
Bsp1286I GDGCHC 2 cut(s) 996, 1372
Bsp143I GATC 5 cut(s) 18, 666, 826, 1018, 1318
Bsp1720I GCTNAGC 1 cut(s) 999
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 4 cut(s) 310, 1050, 1285, 1346
BspANI GGCC 4 cut(s) 5, 299, 983, 1279
BspCNI CTCAG 2 cut(s) 274, 1495
BspFNI CGCG 1 cut(s) 310
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 2 cut(s) 141, 530
BspMAI CTGCAG 1 cut(s) 1204
BspQI GCTCTTC 2 cut(s) 1065, 1377
BspT107I GGYRCC 1 cut(s) 139
BspTNI GGTCTC 1 cut(s) 1255
BsrBI CCGCTC 2 cut(s) 1285, 1346
BsrDI GCAATG 1 cut(s) 1395
BsrI ACTGG 2 cut(s) 134, 1277
BssECI CCNNGG 5 cut(s) 31, 143, 300, 906, 1517
BssMI GATC 5 cut(s) 18, 666, 826, 1018, 1318
BssSI CACGAG 1 cut(s) 1166
BssT1I CCWWGG 4 cut(s) 31, 300, 906, 1517
Bst2BI CACGAG 1 cut(s) 1166
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 4 cut(s) 355, 423, 437, 1133
Bst6I CTCTTC 3 cut(s) 1065, 1377, 1446
BstAPI GCANNNNNTGC 1 cut(s) 1397
BstC8I GCNNGC 4 cut(s) 516, 600, 996, 1393
BstDEI CTNAG 5 cut(s) 282, 999, 1121, 1436, 1482
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 4 cut(s) 532, 862, 1003, 1238
BstFNI CGCG 1 cut(s) 310
BstKTI GATC 5 cut(s) 21, 669, 829, 1021, 1321
BstMAI GTCTC 8 cut(s) 118, 278, 431, 717, 929, 941, 1086, 1255
BstMBI GATC 5 cut(s) 18, 666, 826, 1018, 1318
BstMWI GCNNNNNNNGC 5 cut(s) 296, 1000, 1343, 1376, 1397
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 2 cut(s) 106, 518
BstSCI CCNGG 1 cut(s) 142
BstSFI CTRYAG 1 cut(s) 1200
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 666, 1318
BstXI CCANNNNNNTGG 1 cut(s) 1272
BstYI RGATCY 2 cut(s) 666, 1318
BsuI GTATCC 2 cut(s) 1165, 1456
BsuRI GGCC 4 cut(s) 5, 299, 983, 1279
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 4 cut(s) 532, 862, 1003, 1238
BtsI GCAGTG 1 cut(s) 810
BtsIMutI CAGTG 2 cut(s) 141, 810
Cac8I GCNNGC 4 cut(s) 516, 600, 996, 1393
CciI TCATGA 1 cut(s) 1111
Cfr13I GGNCC 3 cut(s) 227, 529, 981
CseI GACGC 1 cut(s) 316
Csp6I GTAC 2 cut(s) 140, 683
CviQI GTAC 2 cut(s) 140, 683
DdeI CTNAG 5 cut(s) 282, 999, 1121, 1436, 1482
DpnI GATC 5 cut(s) 20, 668, 828, 1020, 1320
DpnII GATC 5 cut(s) 18, 666, 826, 1018, 1318
EaeI YGGCCR 1 cut(s) 1277
Eam1104I CTCTTC 3 cut(s) 1065, 1377, 1446
EarI CTCTTC 3 cut(s) 1065, 1377, 1446
Ecl136II GAGCTC 1 cut(s) 994
Eco130I CCWWGG 4 cut(s) 31, 300, 906, 1517
Eco24I GRGCYC 1 cut(s) 996
Eco31I GGTCTC 1 cut(s) 1255
Eco47I GGWCC 2 cut(s) 227, 529
Eco53kI GAGCTC 1 cut(s) 994
Eco57I CTGAAG 3 cut(s) 129, 538, 854
EcoICRI GAGCTC 1 cut(s) 994
EcoRI GAATTC 1 cut(s) 1421
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 4 cut(s) 31, 300, 906, 1517
EcoT38I GRGCYC 1 cut(s) 996
ErhI CCWWGG 4 cut(s) 31, 300, 906, 1517
Esp3I CGTCTC 1 cut(s) 929
FalI AAGNNNNNCTT 1 cut(s) 1510
FaqI GGGAC 2 cut(s) 542, 1181
FauI CCCGC 1 cut(s) 1339
FauNDI CATATG 1 cut(s) 1468
FblI GTMKAC 1 cut(s) 796
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 4 cut(s) 519, 869, 990, 1245
FriOI GRGCYC 1 cut(s) 996
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 4 cut(s) 207, 387, 525, 1145
GluI GCNGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 4 cut(s) 5, 299, 983, 1279
HapII CCGG 1 cut(s) 1280
HgaI GACGC 1 cut(s) 316
HincII GTYRAC 1 cut(s) 351
HindII GTYRAC 1 cut(s) 351
HindIII AAGCTT 3 cut(s) 600, 1433, 1487
HinfI GANTC 7 cut(s) 620, 748, 774, 798, 820, 851, 1104
HpaII CCGG 1 cut(s) 1280
HphI GGTGA 2 cut(s) 316, 427
Hpy166II GTNNAC 3 cut(s) 351, 550, 797
Hpy188III TCNNGA 8 cut(s) 73, 93, 430, 824, 880, 946, 1112, 1292
Hpy8I GTNNAC 3 cut(s) 351, 550, 797
HpyAV CCTTC 4 cut(s) 16, 61, 97, 692
HpyCH4III ACNGT 4 cut(s) 355, 423, 437, 1133
HpyCH4IV ACGT 2 cut(s) 793, 1313
HpyF10VI GCNNNNNNNGC 5 cut(s) 296, 1000, 1343, 1376, 1397
HpyF3I CTNAG 5 cut(s) 282, 999, 1121, 1436, 1482
HpySE526I ACGT 2 cut(s) 793, 1313
KpnI GGTACC 1 cut(s) 143
Kzo9I GATC 5 cut(s) 18, 666, 826, 1018, 1318
LguI GCTCTTC 2 cut(s) 1065, 1377
LmnI GCTCC 4 cut(s) 910, 1144, 1282, 1343
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 4 cut(s) 472, 1012, 1223, 1388
MaeI CTAG 4 cut(s) 207, 387, 525, 1145
MaeII ACGT 2 cut(s) 793, 1313
MaeIII GTNAC 4 cut(s) 304, 365, 646, 967
MalI GATC 5 cut(s) 20, 668, 828, 1020, 1320
MbiI CCGCTC 2 cut(s) 1285, 1346
MboI GATC 5 cut(s) 18, 666, 826, 1018, 1318
MfeI CAATTG 2 cut(s) 705, 1076
MflI RGATCY 2 cut(s) 666, 1318
MhlI GDGCHC 2 cut(s) 996, 1372
MluCI AATT 5 cut(s) 274, 705, 915, 1076, 1421
MlyI GAGTC 2 cut(s) 792, 1113
MmeI TCCRAC 1 cut(s) 867
MseI TTAA 2 cut(s) 633, 1528
MslI CAYNNNNRTG 2 cut(s) 519, 1008
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 1 cut(s) 1280
MspR9I CCNGG 1 cut(s) 144
MunI CAATTG 2 cut(s) 705, 1076
Mva1269I GAATGC 1 cut(s) 817
MvaI CCWGG 1 cut(s) 144
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 5 cut(s) 296, 1000, 1343, 1376, 1397
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 1468
NdeII GATC 5 cut(s) 18, 666, 826, 1018, 1318
NlaIV GGNNCC 2 cut(s) 141, 530
NmuCI GTSAC 3 cut(s) 304, 365, 646
NspI RCATGY 2 cut(s) 106, 518
PaeI GCATGC 1 cut(s) 518
PagI TCATGA 1 cut(s) 1111
PciI ACATGT 1 cut(s) 102
PciSI GCTCTTC 2 cut(s) 1065, 1377
PcsI WCGNNNNNNNCGW 1 cut(s) 314
PctI GAATGC 1 cut(s) 817
PfeI GAWTC 5 cut(s) 620, 748, 774, 820, 851
PflFI GACNNNGTC 1 cut(s) 652
PflMI CCANNNNNTGG 1 cut(s) 412
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 792, 1112
PpsI GAGTC 2 cut(s) 792, 1112
PscI ACATGT 1 cut(s) 102
Psp124BI GAGCTC 1 cut(s) 996
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 2 cut(s) 141, 530
PspPI GGNCC 3 cut(s) 227, 529, 981
PstI CTGCAG 1 cut(s) 1204
PsuI RGATCY 2 cut(s) 666, 1318
PsyI GACNNNGTC 1 cut(s) 652
PvuII CAGCTG 1 cut(s) 953
RsaI GTAC 2 cut(s) 141, 684
RsaNI GTAC 2 cut(s) 140, 683
RseI CAYNNNNRTG 2 cut(s) 519, 1008
SacI GAGCTC 1 cut(s) 996
SapI GCTCTTC 2 cut(s) 1065, 1377
SaqAI TTAA 2 cut(s) 633, 1528
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 5 cut(s) 18, 666, 826, 1018, 1318
Sau96I GGNCC 3 cut(s) 227, 529, 981
SbfI CCTGCAGG 1 cut(s) 1204
SchI GAGTC 2 cut(s) 792, 1113
ScrFI CCNGG 1 cut(s) 144
SdaI CCTGCAGG 1 cut(s) 1204
SduI GDGCHC 2 cut(s) 996, 1372
SfaNI GCATC 4 cut(s) 472, 1012, 1223, 1388
SfcI CTRYAG 1 cut(s) 1200
SinI GGWCC 2 cut(s) 227, 529
SmiMI CAYNNNNRTG 2 cut(s) 519, 1008
SmlI CTYRAG 1 cut(s) 1083
SmoI CTYRAG 1 cut(s) 1083
SpeI ACTAGT 1 cut(s) 386
SphI GCATGC 1 cut(s) 518
Sse8387I CCTGCAGG 1 cut(s) 1204
Sse9I AATT 5 cut(s) 274, 705, 915, 1076, 1421
SsiI CCGC 4 cut(s) 310, 1050, 1285, 1346
SspMI CTAG 4 cut(s) 207, 387, 525, 1145
SstI GAGCTC 1 cut(s) 996
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 4 cut(s) 31, 300, 906, 1517
TaaI ACNGT 4 cut(s) 355, 423, 437, 1133
TaiI ACGT 2 cut(s) 796, 1316
TaqI TCGA 4 cut(s) 656, 829, 945, 1425
TasI AATT 5 cut(s) 274, 705, 915, 1076, 1421
TatI WGTACW 1 cut(s) 682
TfiI GAWTC 5 cut(s) 620, 748, 774, 820, 851
Tru1I TTAA 2 cut(s) 633, 1528
Tru9I TTAA 2 cut(s) 633, 1528
TscAI CASTG 2 cut(s) 141, 810
TseFI GTSAC 3 cut(s) 304, 365, 646
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 3 cut(s) 304, 365, 646
TspDTI ATGAA 6 cut(s) 43, 49, 824, 1100, 1128, 1323
TspRI CASTG 2 cut(s) 141, 810
Tth111I GACNNNGTC 1 cut(s) 652
Van91I CCANNNNNTGG 1 cut(s) 412
VpaK11BI GGWCC 2 cut(s) 227, 529
XapI RAATTY 1 cut(s) 1421
XceI RCATGY 2 cut(s) 106, 518
XcmI CCANNNNNNNNNTGG 3 cut(s) 298, 741, 1272
XmiI GTMKAC 1 cut(s) 796
XspI CTAG 4 cut(s) 207, 387, 525, 1145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.