Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Forward (+)

59946078 .. 59950706

Gene Structure 4629 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G035420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGACGAATAATATCGTTGAAGATTTTCCTGCAACGTCGTTTTCGATCCTTGTTGCACTCGGCCACTCGCTGGCTCGCTGCTCTTTCTTTTCTGTTGCTATATGTCAAATTGTTGTTGATAGATTGGGTATTGTGCATCAGCTTGGCAAAATTATTACTCTAAATGCGGTACCTGGGCTGCCGGTGATTGGCAATTTGCTGCAACTGAAGGAGAAAAAACACTACAAGACATTTACAAAGTGGGCTGAGGAGTCTGGACTAATCTATTCTATCAGGCTTGCAGCAAGTGACCACGATGATTTTCACAAGATGACCAAACGATGCGTACTCCAAAATGTTCTTGGACCAAATGCTCAGAAGCGACACCGAAGCCACAGAGACACCATGAGAGAAAATATTTCAAGCCGATTGCAGTCTCATCGGCTCAAGGTCCTAGTGATTGACGTGCTGGAGGGTGCGATTGAGGTTGATTGGAGAGATTACTTTCCATTTCTAAGATGGATACCCTATAAGAGCTTGGCTAAAATTCAGGGAATCTATTCCCGAAGGAAAGCAGAAGTAAATTGTTTTGTCGACTTCTTGCTCTCTGAAGCAAAAACATTGTCGTCGACGCTTACAATGGAACAAAAAACTATGTTGGTTTGGGAGATAATTCTTGAGACAGCCGATACTACATTGGTGACAACAGAATGGGCTATGTATCAACTCGAAATTCGAGTTGTTTGTGGATCGGAAAAGATTAGTGAGGAACACTTGCCCCAACTACCATACCTGAGTGCTGTTTTCCATGAAACTTTAAGGAACCACAGTCCATCTGCAATAGCTCTTTTAAGATATGCGTCTCAAGACAATCATTTGGGTGCCCTGAAGAATAAATGGAAGCCGGAGAGATTTATGGACGAGAAAAAATACGATCCAATGGATTTGCACAAGACAATGGCTTTTGGAACTGGAAAGAGAGCATGTGTTGGTTCTCTTCAGGCACCGTTAATAGCATGCACCGGTATTGGTATGTTGGTACAGGAGTTTGAGTGGAAGCTGAGACCTGGCGAAGAAGCAAATGTAGATACTACGACCTTCACAACTCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

363

Amino Acids

41.37

Weight (kDa)

8.57

Isoelectric Point (pI)

45.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	173 - 286	1.3e-13	Cytochrome P450
p450	PF00067	292 - 353	1.5e-08	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	169
AccB1I	GGYRCC	3 cut(s)	169, 860, 982
AccB7I	CCANNNNNTGG	1 cut(s)	70
AccI	GTMKAC	2 cut(s)	573, 608
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	3 cut(s)	40, 736, 908
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	525, 711
AcuI	CTGAAG	4 cut(s)	227, 609, 887, 962
AfaI	GTAC	3 cut(s)	171, 327, 1020
AfiI	CCNNNNNNNGG	2 cut(s)	70, 188
AgeI	ACCGGT	1 cut(s)	1001
AgsI	TTSAA	2 cut(s)	20, 402
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	2 cut(s)	172, 1045
AluBI	AGCT	4 cut(s)	142, 516, 824, 1039
AluI	AGCT	4 cut(s)	142, 516, 824, 1039
Alw26I	GTCTC	5 cut(s)	372, 420, 653, 846, 1036
AlwI	GGATC	3 cut(s)	40, 736, 908
AoxI	GGCC	1 cut(s)	61
ApeKI	GCWGC	4 cut(s)	78, 178, 199, 281
ApoI	RAATTY	2 cut(s)	525, 711
ArsI	GACNNNNNNTTYG	2 cut(s)	587, 619
AsiGI	ACCGGT	1 cut(s)	1001
Asp700I	GAANNNNTTC	2 cut(s)	24, 538
Asp718I	GGTACC	1 cut(s)	169
AspS9I	GGNCC	2 cut(s)	344, 430
AsuHPI	GGTGA	2 cut(s)	196, 691
AvaII	GGWCC	2 cut(s)	344, 430
BaeGI	GKGCMC	1 cut(s)	865
BaeI	ACNNNNGTAYC	2 cut(s)	1010, 1043
BanI	GGYRCC	3 cut(s)	169, 860, 982
BbvCI	CCTCAGC	1 cut(s)	246
BbvI	GCAGC	4 cut(s)	65, 165, 186, 293
BccI	CCATC	2 cut(s)	492, 820
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	174, 1047
BciVI	GTATCC	1 cut(s)	495
BcoDI	GTCTC	5 cut(s)	372, 420, 653, 846, 1036
BfaI	CTAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	495
BisI	GCNGC	4 cut(s)	79, 179, 200, 282
BlsI	GCNGC	4 cut(s)	80, 180, 201, 283
Bme1390I	CCNGG	2 cut(s)	174, 1047
Bme18I	GGWCC	2 cut(s)	344, 430
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	2 cut(s)	344, 430
BmiI	GGNNCC	4 cut(s)	171, 803, 862, 984
BmrFI	CCNGG	2 cut(s)	174, 1047
BmsI	GCATC	2 cut(s)	145, 311
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	3 cut(s)	410, 677, 828
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	1 cut(s)	173
BsaWI	WCCGGW	1 cut(s)	1001
BsaXI	ACNNNNNCTCC	2 cut(s)	1016, 1046
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 188
Bse118I	RCCGGY	2 cut(s)	181, 1001
Bse1I	ACTGG	1 cut(s)	955
BseBI	CCWGG	2 cut(s)	174, 1047
BseDI	CCNNGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	2 cut(s)	70, 188
BseMII	CTCAG	4 cut(s)	237, 368, 764, 1031
BseNI	ACTGG	1 cut(s)	955
BseRI	GAGGAG	1 cut(s)	263
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	4 cut(s)	65, 165, 186, 293
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	3 cut(s)	169, 860, 982
BshTI	ACCGGT	1 cut(s)	1001
BsiSI	CCGG	3 cut(s)	182, 884, 1002
BslI	CCNNNNNNNGG	2 cut(s)	70, 188
BsmAI	GTCTC	5 cut(s)	372, 420, 653, 846, 1036
BsmBI	CGTCTC	1 cut(s)	846
BsnI	GGCC	1 cut(s)	63
Bso31I	GGTCTC	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	3 cut(s)	45, 728, 913
BspACI	CCGC	1 cut(s)	167
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	4 cut(s)	238, 367, 765, 1032
BspLI	GGNNCC	4 cut(s)	171, 803, 862, 984
BspPI	GGATC	3 cut(s)	40, 736, 908
BspT107I	GGYRCC	3 cut(s)	169, 860, 982
BspTNI	GGTCTC	1 cut(s)	1036
BsrFI	RCCGGY	2 cut(s)	181, 1001
BsrI	ACTGG	1 cut(s)	955
BssAI	RCCGGY	2 cut(s)	181, 1001
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	45, 728, 913
Bst2UI	CCWGG	2 cut(s)	174, 1047
Bst4CI	ACNGT	2 cut(s)	809, 987
Bst6I	CTCTTC	1 cut(s)	981
BstC8I	GCNNGC	4 cut(s)	72, 76, 279, 997
BstDEI	CTNAG	5 cut(s)	246, 354, 494, 773, 1040
BstKTI	GATC	3 cut(s)	48, 731, 916
BstMAI	GTCTC	5 cut(s)	372, 420, 653, 846, 1036
BstMBI	GATC	3 cut(s)	45, 728, 913
BstNI	CCWGG	2 cut(s)	174, 1047
BstNSI	RCATGY	2 cut(s)	966, 999
BstSCI	CCNGG	2 cut(s)	172, 1045
BstSLI	GKGCMC	1 cut(s)	865
BstV1I	GCAGC	4 cut(s)	65, 165, 186, 293
BsuI	GTATCC	1 cut(s)	495
BsuRI	GGCC	1 cut(s)	63
BtrI	CACGTC	1 cut(s)	445
Cac8I	GCNNGC	4 cut(s)	72, 76, 279, 997
Cfr10I	RCCGGY	2 cut(s)	181, 1001
Cfr13I	GGNCC	2 cut(s)	344, 430
CseI	GACGC	2 cut(s)	619, 828
Csp6I	GTAC	3 cut(s)	170, 326, 1019
CspAI	ACCGGT	1 cut(s)	1001
CviAII	CATG	4 cut(s)	385, 788, 963, 996
CviQI	GTAC	3 cut(s)	170, 326, 1019
DdeI	CTNAG	5 cut(s)	246, 354, 494, 773, 1040
DpnI	GATC	3 cut(s)	47, 730, 915
DpnII	GATC	3 cut(s)	45, 728, 913
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	981
EarI	CTCTTC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	1036
Eco47I	GGWCC	2 cut(s)	344, 430
Eco57I	CTGAAG	4 cut(s)	227, 609, 887, 962
EcoO109I	RGGNCCY	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	172, 1045
Esp3I	CGTCTC	1 cut(s)	846
FaeI	CATG	4 cut(s)	388, 791, 966, 999
FatI	CATG	4 cut(s)	384, 787, 962, 995
FblI	GTMKAC	2 cut(s)	573, 608
Fnu4HI	GCNGC	4 cut(s)	79, 179, 200, 282
Fsp4HI	GCNGC	4 cut(s)	79, 179, 200, 282
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	4 cut(s)	79, 179, 200, 282
GsuI	CTGGAG	1 cut(s)	470
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	3 cut(s)	182, 884, 1002
HgaI	GACGC	2 cut(s)	619, 828
Hin1II	CATG	4 cut(s)	388, 791, 966, 999
HincII	GTYRAC	2 cut(s)	574, 609
HindII	GTYRAC	2 cut(s)	574, 609
HinfI	GANTC	2 cut(s)	251, 534
HpaII	CCGG	3 cut(s)	182, 884, 1002
HphI	GGTGA	2 cut(s)	196, 691
Hpy166II	GTNNAC	2 cut(s)	574, 609
Hpy188I	TCNGA	3 cut(s)	357, 589, 733
Hpy188III	TCNNGA	4 cut(s)	255, 543, 656, 845
Hpy8I	GTNNAC	2 cut(s)	574, 609
Hpy99I	CGWCG	3 cut(s)	40, 610, 613
HpyAV	CCTTC	3 cut(s)	202, 540, 1087
HpyCH4III	ACNGT	2 cut(s)	809, 987
HpyCH4IV	ACGT	2 cut(s)	35, 444
HpyCH4V	TGCA	9 cut(s)	32, 56, 136, 202, 281, 412, 818, 928, 999
HpyF3I	CTNAG	5 cut(s)	246, 354, 494, 773, 1040
HpySE526I	ACGT	2 cut(s)	35, 444
Hsp92II	CATG	4 cut(s)	388, 791, 966, 999
KpnI	GGTACC	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	45, 728, 913
Lsp1109I	GCAGC	4 cut(s)	65, 165, 186, 293
LweI	GCATC	2 cut(s)	145, 311
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	35, 444
MaeIII	GTNAC	2 cut(s)	287, 679
MalI	GATC	3 cut(s)	47, 730, 915
MboI	GATC	3 cut(s)	45, 728, 913
MboII	GAAGA	4 cut(s)	32, 880, 968, 1064
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	7 cut(s)	108, 150, 193, 525, 562, 651, 711
MlyI	GAGTC	1 cut(s)	260
MnlI	CCTC	4 cut(s)	241, 445, 457, 739
MroXI	GAANNNNTTC	2 cut(s)	24, 538
MseI	TTAA	4 cut(s)	797, 830, 989, 1090
MslI	CAYNNNNRTG	1 cut(s)	858
MspI	CCGG	3 cut(s)	182, 884, 1002
MspR9I	CCNGG	2 cut(s)	174, 1047
MvaI	CCWGG	2 cut(s)	174, 1047
NdeII	GATC	3 cut(s)	45, 728, 913
NlaIII	CATG	4 cut(s)	388, 791, 966, 999
NlaIV	GGNNCC	4 cut(s)	171, 803, 862, 984
NmeAIII	GCCGAG	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	287, 679
NspI	RCATGY	2 cut(s)	966, 999
PaeI	GCATGC	1 cut(s)	999
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PdmI	GAANNNNTTC	2 cut(s)	24, 538
PfeI	GAWTC	1 cut(s)	534
PflMI	CCANNNNNTGG	1 cut(s)	70
PinAI	ACCGGT	1 cut(s)	1001
PkrI	GCNGC	4 cut(s)	80, 180, 201, 283
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	430
Psp6I	CCWGG	2 cut(s)	172, 1045
PspGI	CCWGG	2 cut(s)	172, 1045
PspN4I	GGNNCC	4 cut(s)	171, 803, 862, 984
PspPI	GGNCC	2 cut(s)	344, 430
PspPPI	RGGWCCY	1 cut(s)	430
RsaI	GTAC	3 cut(s)	171, 327, 1020
RsaNI	GTAC	3 cut(s)	170, 326, 1019
RseI	CAYNNNNRTG	1 cut(s)	858
SalI	GTCGAC	2 cut(s)	572, 607
SaqAI	TTAA	4 cut(s)	797, 830, 989, 1090
SatI	GCNGC	4 cut(s)	79, 179, 200, 282
Sau3AI	GATC	3 cut(s)	45, 728, 913
Sau96I	GGNCC	2 cut(s)	344, 430
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	2 cut(s)	174, 1047
SduI	GDGCHC	1 cut(s)	865
SfaNI	GCATC	2 cut(s)	145, 311
SgrDI	CGTCGACG	1 cut(s)	607
SinI	GGWCC	2 cut(s)	344, 430
SmiMI	CAYNNNNRTG	1 cut(s)	858
SmlI	CTYRAG	3 cut(s)	425, 656, 843
SmoI	CTYRAG	3 cut(s)	425, 656, 843
SphI	GCATGC	1 cut(s)	999
Sse9I	AATT	7 cut(s)	108, 150, 193, 525, 562, 651, 711
SsiI	CCGC	1 cut(s)	167
SspI	AATATT	1 cut(s)	397
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	172, 1045
TaaI	ACNGT	2 cut(s)	809, 987
TaiI	ACGT	2 cut(s)	38, 447
TaqI	TCGA	5 cut(s)	44, 573, 608, 708, 715
TasI	AATT	7 cut(s)	108, 150, 193, 525, 562, 651, 711
TfiI	GAWTC	1 cut(s)	534
Tru1I	TTAA	4 cut(s)	797, 830, 989, 1090
Tru9I	TTAA	4 cut(s)	797, 830, 989, 1090
TseFI	GTSAC	2 cut(s)	287, 679
TseI	GCWGC	4 cut(s)	78, 178, 199, 281
Tsp45I	GTSAC	2 cut(s)	287, 679
TspDTI	ATGAA	1 cut(s)	804
Van91I	CCANNNNNTGG	1 cut(s)	70
VpaK11BI	GGWCC	2 cut(s)	344, 430
XapI	RAATTY	2 cut(s)	525, 711
XceI	RCATGY	2 cut(s)	966, 999
XcmI	CCANNNNNNNNNTGG	2 cut(s)	338, 495
XmiI	GTMKAC	2 cut(s)	573, 608
XmnI	GAANNNNTTC	2 cut(s)	24, 538
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.