Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Reverse (-)

9126986 .. 9134783

Gene Structure 7798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCCCAATAAGAGCTTGGAAACTAAAATTCAGAATGGGCTATGTATCAACTCGGTAAATAAGATCCTATCCGCCAGCAACGTCGACTATATGAAGAAATTCGAGATGTTTGTGGATCGGAAAAGATTAGTGAGGAACACTTGCCCCAACTACCATACCTTAATGCTGTTTTCCAGGAACCACAGTCGAGCTGCAATAGCTCTTTTAAGATATGCGTCTCAAGACACTCATTTTGGTGGTTACTATATTCCTGCTGGAAATGAGGCTAGGTTTTCATCACTATTTATGTTGCTGCTTGTAAGACTTTGGATTATTGAGTTATATGATATAAGAAAACGTGGCTTTGGCTGCAAATACGTACGTCCAAAGGAAAAAGTTGACGGCGAGCCAAACACTACGCTTTCGGCTGGAGATAACGGACTCGATCGATCTGTGGCCCATTACCGCTTCTATGGCTGGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

154

Amino Acids

17.84

Weight (kDa)

9.61

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	2 cut(s)	72, 445
AclWI	GGATC	2 cut(s)	58, 123
AcsI	RAATTY	2 cut(s)	27, 98
AfaI	GTAC	1 cut(s)	360
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	15, 191, 200
AluI	AGCT	3 cut(s)	15, 191, 200
Alw26I	GTCTC	1 cut(s)	222
AlwI	GGATC	2 cut(s)	58, 123
AoxI	GGCC	1 cut(s)	435
ApeKI	GCWGC	3 cut(s)	191, 292, 348
ApoI	RAATTY	2 cut(s)	27, 98
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
Asp700I	GAANNNNTTC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	436
BbvI	GCAGC	3 cut(s)	178, 279, 335
BceAI	ACGGC	1 cut(s)	397
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	222
BfaI	CTAG	2 cut(s)	267, 463
BisI	GCNGC	3 cut(s)	192, 293, 349
BlsI	GCNGC	3 cut(s)	193, 294, 350
Bme1390I	CCNGG	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	358
BseBI	CCWGG	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	427
BseXI	GCAGC	3 cut(s)	178, 279, 335
BseYI	CCCAGC	1 cut(s)	456
Bsh1285I	CGRYCG	1 cut(s)	427
BshFI	GGCC	1 cut(s)	437
BshVI	ATCGAT	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	427
BsiWI	CGTACG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	222
BsmBI	CGTCTC	1 cut(s)	222
BsnI	GGCC	1 cut(s)	437
Bsp143I	GATC	4 cut(s)	63, 115, 424, 428
BspACI	CCGC	2 cut(s)	72, 445
BspANI	GGCC	1 cut(s)	437
BspDI	ATCGAT	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	58, 123
BssMI	GATC	4 cut(s)	63, 115, 424, 428
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	358
BstC8I	GCNNGC	2 cut(s)	76, 386
BstKTI	GATC	4 cut(s)	66, 118, 427, 431
BstMAI	GTCTC	1 cut(s)	222
BstMBI	GATC	4 cut(s)	63, 115, 424, 428
BstMCI	CGRYCG	1 cut(s)	427
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 348, 453
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSNI	TACGTA	1 cut(s)	358
BstV1I	GCAGC	3 cut(s)	178, 279, 335
BstX2I	RGATCY	1 cut(s)	63
BstYI	RGATCY	1 cut(s)	63
Bsu15I	ATCGAT	1 cut(s)	427
BsuRI	GGCC	1 cut(s)	437
BsuTUI	ATCGAT	1 cut(s)	427
Cac8I	GCNNGC	2 cut(s)	76, 386
Cfr13I	GGNCC	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	427
CseI	GACGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	359
CviQI	GTAC	1 cut(s)	359
DpnI	GATC	4 cut(s)	65, 117, 426, 430
DpnII	GATC	4 cut(s)	63, 115, 424, 428
EciI	GGCGGA	1 cut(s)	61
Eco105I	TACGTA	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	3 cut(s)	192, 293, 349
Fsp4HI	GCNGC	3 cut(s)	192, 293, 349
FspBI	CTAG	2 cut(s)	267, 463
GluI	GCNGC	3 cut(s)	192, 293, 349
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	429
HaeIII	GGCC	1 cut(s)	437
HgaI	GACGC	1 cut(s)	204
HincII	GTYRAC	2 cut(s)	85, 379
HindII	GTYRAC	2 cut(s)	85, 379
HinfI	GANTC	1 cut(s)	420
Hpy166II	GTNNAC	2 cut(s)	85, 379
Hpy188I	TCNGA	2 cut(s)	33, 120
Hpy188III	TCNNGA	2 cut(s)	103, 221
Hpy8I	GTNNAC	2 cut(s)	85, 379
Hpy99I	CGWCG	1 cut(s)	86
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	4 cut(s)	81, 337, 357, 361
HpyCH4V	TGCA	2 cut(s)	194, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 348, 453
HpySE526I	ACGT	4 cut(s)	81, 337, 357, 361
Kzo9I	GATC	4 cut(s)	63, 115, 424, 428
LpnPI	CCDG	7 cut(s)	88, 160, 187, 240, 264, 393, 442
Lsp1109I	GCAGC	3 cut(s)	178, 279, 335
MaeI	CTAG	2 cut(s)	267, 463
MaeII	ACGT	4 cut(s)	81, 337, 357, 361
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	4 cut(s)	65, 117, 426, 430
MboI	GATC	4 cut(s)	63, 115, 424, 428
MboII	GAAGA	1 cut(s)	106
MflI	RGATCY	1 cut(s)	63
MluCI	AATT	2 cut(s)	27, 98
MlyI	GAGTC	1 cut(s)	414
MnlI	CCTC	2 cut(s)	126, 256
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	161, 206
MslI	CAYNNNNRTG	1 cut(s)	234
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	3 cut(s)	197, 348, 453
NdeII	GATC	4 cut(s)	63, 115, 424, 428
NlaIV	GGNNCC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	98
Pfl23II	CGTACG	1 cut(s)	358
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	3 cut(s)	193, 294, 350
Ple19I	CGATCG	1 cut(s)	427
PleI	GAGTC	1 cut(s)	414
PpsI	GAGTC	1 cut(s)	414
Ppu21I	YACGTR	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	173
PspFI	CCCAGC	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	173
PspLI	CGTACG	1 cut(s)	358
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	63
PvuI	CGATCG	1 cut(s)	427
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	161, 206
SatI	GCNGC	3 cut(s)	192, 293, 349
Sau3AI	GATC	4 cut(s)	63, 115, 424, 428
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	1 cut(s)	175
SetI	ASST	9 cut(s)	17, 84, 161, 193, 202, 272, 340, 360, 364
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SnaBI	TACGTA	1 cut(s)	358
Sse9I	AATT	2 cut(s)	27, 98
SsiI	CCGC	2 cut(s)	72, 445
SspMI	CTAG	2 cut(s)	267, 463
StyD4I	CCNGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	4 cut(s)	84, 340, 360, 364
TaqI	TCGA	5 cut(s)	84, 102, 187, 423, 427
TasI	AATT	2 cut(s)	27, 98
Tru1I	TTAA	2 cut(s)	161, 206
Tru9I	TTAA	2 cut(s)	161, 206
TseI	GCWGC	3 cut(s)	191, 292, 348
TspDTI	ATGAA	2 cut(s)	107, 264
TspGWI	ACGGA	1 cut(s)	432
XapI	RAATTY	2 cut(s)	27, 98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	267, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.