Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Forward (+)

63823441 .. 63823773

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG413100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAAAACCCTGATTAATGAACAAAAGAAGCGAATTGATTCAGGCGAGGAAGTAAATTGTTTTGTCGACTTCTTGCTCTCTGAAGCAAAAACATTGTCGTCGACGCTTACAATGGAACAAATAACTATGTTGGTTTGGGAGATAATTCTTGAGACAGCCGATACTACATTGGTGACAACAGAATGGGCTATGTATCAACTCGGTAAAGAACTAAAGATCCTATCCGCCAGGAACGTCTTTATGAAGAAATTCGAGGGTGTTTGTGGATCGGAAAAGATTAGTGAGGAACACTTGCCCCAACTACCATATATACCTGAGTGCCGTTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

110

Amino Acids

12.68

Weight (kDa)

4.9

Isoelectric Point (pI)

41.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	2 - 105	9.5e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	66, 101
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	2 cut(s)	211, 274
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	227
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	2 cut(s)	211, 274
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	2 cut(s)	80, 112
AseI	ATTAAT	1 cut(s)	15
Asp700I	GAANNNNTTC	2 cut(s)	37, 248
AsuHPI	GGTGA	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	306
BciT130I	CCWGG	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	146
Bme1390I	CCNGG	1 cut(s)	229
BmrFI	CCNGG	1 cut(s)	229
BpuEI	CTTGAG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	306
BsmAI	GTCTC	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	216, 266
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	1 cut(s)	307
BspPI	GGATC	2 cut(s)	211, 274
BssMI	GATC	2 cut(s)	216, 266
Bst2UI	CCWGG	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	315
BstKTI	GATC	2 cut(s)	219, 269
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	216, 266
BstNI	CCWGG	1 cut(s)	229
BstSCI	CCNGG	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
CseI	GACGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	330
CviJI	RGCY	2 cut(s)	158, 188
CviKI_1	RGCY	2 cut(s)	158, 188
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	2 cut(s)	218, 268
DpnII	GATC	2 cut(s)	216, 266
EciI	GGCGGA	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	333
FaiI	YATR	7 cut(s)	128, 191, 242, 307, 309, 311, 331
FatI	CATG	1 cut(s)	329
FblI	GTMKAC	2 cut(s)	66, 101
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	333
HincII	GTYRAC	2 cut(s)	67, 102
HindII	GTYRAC	2 cut(s)	67, 102
HinfI	GANTC	1 cut(s)	38
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	2 cut(s)	67, 102
Hpy188I	TCNGA	2 cut(s)	82, 271
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	2 cut(s)	67, 102
Hpy99I	CGWCG	2 cut(s)	103, 106
HpyCH4IV	ACGT	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	315
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	333
Kzo9I	GATC	2 cut(s)	216, 266
LpnPI	CCDG	5 cut(s)	23, 27, 214, 241, 327
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	2 cut(s)	218, 268
MboI	GATC	2 cut(s)	216, 266
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	1 cut(s)	216
MluCI	AATT	4 cut(s)	33, 55, 144, 248
MnlI	CCTC	3 cut(s)	40, 247, 277
MroXI	GAANNNNTTC	2 cut(s)	37, 248
MseI	TTAA	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
NdeII	GATC	2 cut(s)	216, 266
NlaIII	CATG	1 cut(s)	333
NmuCI	GTSAC	1 cut(s)	172
PdmI	GAANNNNTTC	2 cut(s)	37, 248
PfeI	GAWTC	1 cut(s)	38
PshBI	ATTAAT	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	227
PspGI	CCWGG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	216
SalI	GTCGAC	2 cut(s)	65, 100
SaqAI	TTAA	1 cut(s)	15
Sau3AI	GATC	2 cut(s)	216, 266
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	2 cut(s)	237, 316
SgrDI	CGTCGACG	1 cut(s)	100
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	33, 55, 144, 248
SsiI	CCGC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	227
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	3 cut(s)	66, 101, 252
TasI	AATT	4 cut(s)	33, 55, 144, 248
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	172
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	3 cut(s)	17, 33, 257
VspI	ATTAAT	1 cut(s)	15
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	66, 101
XmnI	GAANNNNTTC	2 cut(s)	37, 248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.