Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Reverse (-)

59354961 .. 59358580

Gene Structure 3620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG406200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCCACACTCCAGCAAATCCTTCTGCAACTCCAAGCAAGTCCCTTTACCATCCCTATTGCTCTTGCTGCTCTGTCTTTGCTCTTCCTGTATTACATCAGAGTTTCATACTTCACTAAAATGAGTGCTATTCCCAAGCTCCCTCCTGTGCCAGTGGTTCCTGGGCTGCCGGTGATTGGGAATTTGCTGCAACTCAAGGAGAAGAAACCGTACAAGACTTTCACAAGGTGGGCTGAGGAGTATGGACCAATCTATTCGATCAGGACTGGTGCTTCCACCATGGTCGTTCTCAATACCTCCGAAGTTGCCAAAGAGGCCATGGTGACCAGATATTCATCCATCTCAACCAGAAAGCTGTCAAACGCACTAAAGATTCTTACTGCTGATAAATGTATGGTTGCAATAAGTGACTACAACGATTTTCACAAGATGATAAAGCGATACATACTCTCAAATGTTCTTGGAGCCAATGCTCAGAAGAAACACCGGAGCAACAGAGATACCTTGAGAGCAAATGTCTCAAGCCGATTACATTCTCATGTTAAGAATTCTCCTCAAGAAGCTGTGAATTTCAGAAGAATCTTTGAGTCAGAACTCTTTGGAATTGCAGTGAAGCAGGCCTTTGGAAAGGACATAGAAAAGCCCATTTATGTGGAGGAACTTGGCACTACACTTTCAAGAGATGAGATCTTTAAGGTTCTAGTGCTTGACATAATGGAGGGTGCAATTGAGGTTGATTGGAGAGATTTCTTCCCTTACCTGAGATGGATTCCTAATAAGACCATGGAAACAAAAATTCAGCGACTACATTCCCGCAGGAAAGCAGTGATGACTACCCTGATCAATGAGCAGAAGAAGCGAATTGCCTCAGGAGAGGAACTCAATTGTTATATCGACTTCTTGCTTTCTGAAGGGAAAACACTGACAATGGACCAAATATCTATGTTGCTTTGGGAGACAGTTATTGAAACAGCAGATACTACAATGGTCACCACAGAATGGGCTATGTATGAAATTTCTAAAGATCCAACGCGACAGGTTCATTTCAATTCACTCATTTACTGGTTTGGAAATTCGCATATGATAACAATTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

365

Amino Acids

41.91

Weight (kDa)

9.32

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	53 - 346	4e-27	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	999
AccII	CGCG	1 cut(s)	1033
AciI	CCGC	1 cut(s)	814
AclWI	GGATC	1 cut(s)	1019
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	6 cut(s)	181, 547, 568, 795, 1014, 1072
AcuI	CTGAAG	1 cut(s)	930
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	2 cut(s)	176, 999
AgsI	TTSAA	3 cut(s)	678, 968, 1048
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	3 cut(s)	139, 355, 563
AluI	AGCT	3 cut(s)	139, 355, 563
Alw26I	GTCTC	2 cut(s)	523, 950
AlwI	GGATC	1 cut(s)	1019
AoxI	GGCC	3 cut(s)	3, 315, 618
ApeKI	GCWGC	3 cut(s)	68, 166, 187
ApoI	RAATTY	6 cut(s)	181, 547, 568, 795, 1014, 1072
AspS9I	GGNCC	2 cut(s)	245, 931
AsuHPI	GGTGA	3 cut(s)	184, 334, 982
AvaII	GGWCC	2 cut(s)	245, 931
AxyI	CCTNAGG	1 cut(s)	868
BalI	TGGCCA	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	3 cut(s)	55, 153, 174
BccI	CCATC	3 cut(s)	59, 347, 759
BciT130I	CCWGG	1 cut(s)	162
BclI	TGATCA	1 cut(s)	840
BcoDI	GTCTC	2 cut(s)	523, 950
BfaI	CTAG	1 cut(s)	701
BglI	GCCNNNNNGGC	1 cut(s)	314
BglII	AGATCT	1 cut(s)	687
BisI	GCNGC	3 cut(s)	69, 167, 188
BlsI	GCNGC	3 cut(s)	70, 168, 189
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	245, 931
BmgT120I	GGNCC	2 cut(s)	245, 931
BmiI	GGNNCC	2 cut(s)	159, 466
BmrFI	CCNGG	1 cut(s)	162
BplI	GAGNNNNNCTC	2 cut(s)	864, 896
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	4 cut(s)	179, 505, 526, 540
BsaBI	GATNNNNATC	1 cut(s)	334
BsaJI	CCNNGG	4 cut(s)	161, 279, 318, 783
BsaWI	WCCGGW	1 cut(s)	486
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 999
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	152, 271, 1067
Bse21I	CCTNAGG	1 cut(s)	868
Bse8I	GATNNNNATC	1 cut(s)	334
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	161, 279, 318, 783
BseGI	GGATG	2 cut(s)	51, 335
BseJI	GATNNNNATC	1 cut(s)	334
BseLI	CCNNNNNNNGG	2 cut(s)	176, 999
BseMII	CTCAG	4 cut(s)	225, 488, 752, 882
BseNI	ACTGG	3 cut(s)	152, 271, 1067
BseRI	GAGGAG	2 cut(s)	251, 543
BseXI	GCAGC	3 cut(s)	55, 153, 174
Bsh1236I	CGCG	1 cut(s)	1033
BshFI	GGCC	3 cut(s)	5, 317, 620
BsiSI	CCGG	2 cut(s)	170, 487
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	176, 999
BsmAI	GTCTC	2 cut(s)	523, 950
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	3 cut(s)	5, 317, 620
Bsp143I	GATC	4 cut(s)	258, 687, 840, 1024
Bsp19I	CCATGG	3 cut(s)	279, 318, 783
BspACI	CCGC	1 cut(s)	814
BspANI	GGCC	3 cut(s)	5, 317, 620
BspCNI	CTCAG	4 cut(s)	226, 487, 753, 881
BspFNI	CGCG	1 cut(s)	1033
BspLI	GGNNCC	2 cut(s)	159, 466
BspPI	GGATC	1 cut(s)	1019
BspQI	GCTCTTC	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	152, 271, 1067
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	4 cut(s)	161, 279, 318, 783
BssMI	GATC	4 cut(s)	258, 687, 840, 1024
BssT1I	CCWWGG	3 cut(s)	279, 318, 783
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	2 cut(s)	210, 961
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	4 cut(s)	234, 474, 761, 868
BstDSI	CCRYGG	3 cut(s)	279, 318, 783
BstEII	GGTNACC	2 cut(s)	322, 988
BstF5I	GGATG	2 cut(s)	51, 335
BstFNI	CGCG	1 cut(s)	1033
BstKTI	GATC	4 cut(s)	261, 690, 843, 1027
BstMAI	GTCTC	2 cut(s)	523, 950
BstMBI	GATC	4 cut(s)	258, 687, 840, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 314, 856
BstNI	CCWGG	1 cut(s)	162
BstPI	GGTNACC	2 cut(s)	322, 988
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	1033
BstV1I	GCAGC	3 cut(s)	55, 153, 174
BstX2I	RGATCY	2 cut(s)	687, 1024
BstXI	CCANNNNNNTGG	1 cut(s)	652
BstYI	RGATCY	2 cut(s)	687, 1024
Bsu36I	CCTNAGG	1 cut(s)	868
BsuRI	GGCC	3 cut(s)	5, 317, 620
BtgI	CCRYGG	3 cut(s)	279, 318, 783
BtsCI	GGATG	2 cut(s)	51, 335
BtsI	GCAGTG	2 cut(s)	615, 831
BtsIMutI	CAGTG	4 cut(s)	159, 615, 831, 920
Cac8I	GCNNGC	1 cut(s)	618
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	245, 931
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	4 cut(s)	280, 319, 539, 784
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	4 cut(s)	234, 474, 761, 868
DpnI	GATC	4 cut(s)	260, 689, 842, 1026
DpnII	GATC	4 cut(s)	258, 687, 840, 1024
DraIII	CACNNNGTG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	279, 318, 783
Eco147I	AGGCCT	1 cut(s)	620
Eco47I	GGWCC	2 cut(s)	245, 931
Eco57I	CTGAAG	1 cut(s)	930
Eco81I	CCTNAGG	1 cut(s)	868
Eco91I	GGTNACC	2 cut(s)	322, 988
EcoO65I	GGTNACC	2 cut(s)	322, 988
EcoRI	GAATTC	1 cut(s)	547
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	3 cut(s)	279, 318, 783
ErhI	CCWWGG	3 cut(s)	279, 318, 783
FaeI	CATG	4 cut(s)	283, 322, 542, 787
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	279, 318, 538, 783
FauI	CCCGC	1 cut(s)	821
FauNDI	CATATG	1 cut(s)	1080
FbaI	TGATCA	1 cut(s)	840
Fnu4HI	GCNGC	3 cut(s)	69, 167, 188
FokI	GGATG	2 cut(s)	38, 322
Fsp4HI	GCNGC	3 cut(s)	69, 167, 188
FspBI	CTAG	1 cut(s)	701
GluI	GCNGC	3 cut(s)	69, 167, 188
HaeIII	GGCC	3 cut(s)	5, 317, 620
HapII	CCGG	2 cut(s)	170, 487
Hin1II	CATG	4 cut(s)	283, 322, 542, 787
HinfI	GANTC	4 cut(s)	373, 579, 587, 769
HpaII	CCGG	2 cut(s)	170, 487
HphI	GGTGA	3 cut(s)	184, 334, 982
Hpy188I	TCNGA	6 cut(s)	101, 301, 477, 575, 592, 910
Hpy188III	TCNNGA	4 cut(s)	262, 557, 678, 870
HpyAV	CCTTC	2 cut(s)	32, 905
HpyCH4III	ACNGT	2 cut(s)	210, 961
HpyCH4V	TGCA	5 cut(s)	28, 190, 401, 608, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 314, 856
HpyF3I	CTNAG	4 cut(s)	234, 474, 761, 868
Hsp92II	CATG	4 cut(s)	283, 322, 542, 787
Ksp22I	TGATCA	1 cut(s)	840
Kzo9I	GATC	4 cut(s)	258, 687, 840, 1024
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	3 cut(s)	144, 464, 489
Lsp1109I	GCAGC	3 cut(s)	55, 153, 174
MaeI	CTAG	1 cut(s)	701
MaeIII	GTNAC	3 cut(s)	322, 407, 988
MalI	GATC	4 cut(s)	260, 689, 842, 1026
MboI	GATC	4 cut(s)	258, 687, 840, 1024
MboII	GAAGA	6 cut(s)	76, 214, 490, 588, 742, 865
MfeI	CAATTG	2 cut(s)	726, 883
MflI	RGATCY	2 cut(s)	687, 1024
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	596
MmeI	TCCRAC	1 cut(s)	1052
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	543, 693
MslI	CAYNNNNRTG	3 cut(s)	119, 537, 650
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	170, 487
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	2 cut(s)	726, 883
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	3 cut(s)	68, 314, 856
NcoI	CCATGG	3 cut(s)	279, 318, 783
NdeI	CATATG	1 cut(s)	1080
NdeII	GATC	4 cut(s)	258, 687, 840, 1024
NlaIII	CATG	4 cut(s)	283, 322, 542, 787
NlaIV	GGNNCC	2 cut(s)	159, 466
NmuCI	GTSAC	3 cut(s)	322, 407, 988
PceI	AGGCCT	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	373, 579, 769
PflMI	CCANNNNNTGG	1 cut(s)	999
PkrI	GCNGC	3 cut(s)	70, 168, 189
PleI	GAGTC	1 cut(s)	595
PpsI	GAGTC	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	160
PspEI	GGTNACC	2 cut(s)	322, 988
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	2 cut(s)	159, 466
PspPI	GGNCC	2 cut(s)	245, 931
PsuI	RGATCY	2 cut(s)	687, 1024
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	3 cut(s)	119, 537, 650
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	543, 693
SatI	GCNGC	3 cut(s)	69, 167, 188
Sau3AI	GATC	4 cut(s)	258, 687, 840, 1024
Sau96I	GGNCC	2 cut(s)	245, 931
SchI	GAGTC	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	245, 931
SmiMI	CAYNNNNRTG	3 cut(s)	119, 537, 650
SmlI	CTYRAG	4 cut(s)	194, 505, 520, 555
SmoI	CTYRAG	4 cut(s)	194, 505, 520, 555
SseBI	AGGCCT	1 cut(s)	620
SsiI	CCGC	1 cut(s)	814
SspMI	CTAG	1 cut(s)	701
StuI	AGGCCT	1 cut(s)	620
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	3 cut(s)	279, 318, 783
TaaI	ACNGT	2 cut(s)	210, 961
TaqI	TCGA	2 cut(s)	257, 894
TfiI	GAWTC	3 cut(s)	373, 579, 769
Tru1I	TTAA	2 cut(s)	543, 693
Tru9I	TTAA	2 cut(s)	543, 693
TscAI	CASTG	4 cut(s)	159, 615, 831, 927
TseFI	GTSAC	3 cut(s)	322, 407, 988
TseI	GCWGC	3 cut(s)	68, 166, 187
Tsp45I	GTSAC	3 cut(s)	322, 407, 988
TspDTI	ATGAA	4 cut(s)	96, 324, 1026, 1031
TspRI	CASTG	4 cut(s)	159, 615, 831, 927
Van91I	CCANNNNNTGG	1 cut(s)	999
VpaK11BI	GGWCC	2 cut(s)	245, 931
XapI	RAATTY	6 cut(s)	181, 547, 568, 795, 1014, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.