Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Forward (+)

44559698 .. 44561794

Gene Structure 2097 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2097 bp

ATGGCAAGTTCTATTGTCCGTACCGAAAGGAAGAGGAAGCTGTGCTTATTCGACCATTCGGTCTCATCCGACTCCAAGAGGAGCAAACCAAATGGTGGTGGAGGAGCAACCTCAACGAACCTCGATACTAGTATTGATCTCATCAACAACAGGTGGACTGGAAGGCCTTACTCAGAAAGGTACTATGAGATCCTTAAGAAGAGGAGAACTTTGCCTGTTTGGAAATATAAAGAGAAGTTCTTGCAGGAACTCAAGGGCACCCAATGTTTAGTTTTAGTTGGTGAAACCGGCAGTGGTAAAACTACTCAGATTCCTCAATTTGTTTTGGAAGCTGTTGCCGAGAATGTATATCCAGAACTAACACGCAGCAAGAAGAAGATGATGATTGCGTGTACTCAGCCCCGTCGAGTGGCTGCAATGTCAGTGTCCCGCCGTGTTGCTGAGGAGATGGATGTGGTCATCGGAGAAGAGGTTGGTTACAGCATCCGTTTCGAGGAGTGCACCAGCGGGAAGACAATGTTGAAGTACTTAACTGATGGTATGCTTTTAAGAGAAGCAATGGCAGATCCACTATTTGAGAGATATAATGTCATAATTCTTGACGAAGCTCATGAAAGAACTTTGGCCACTGATCTTCTGTTTGGGATTCTCAAGGAAGTGTTGAAAGTTAGAGCTGACCTGAAGCTGGTTGTGATGAGTGCTACTCTTGAGGCCAAGAAGTTTCGAGATTATTTTAATGGTGCACCCCTCATAGAAGTTCCTGGCAGGCTTTATCCTGTGGAGATTATTTACACTCAGCAACCCGAAAGGGATTACGTAGAGGCAGCAATACGAACTGTTGCACAGATTCTTACTTGTGAGGCTCCTGGAGATGTGCTTGTTTTCCTAACTGGAGAGGAGGAAATAGAAGATGCATGCCGCAAAATTAATAGAGAAATTAATAAAATGATCAATTACCAGTGTGAAATTGGTCCTGTGAAAGTGATGCCATTGTATTCAACTCTCCCCTCTGATATGCAACAGAAAGTGTTTGATCAAATTCCTGAGAGGAAAATTGTGGTGTCAACAAACATTGCAGAAACTTCTCTTACCATAGATGGAGTTGTTTATGTTGTTGACCCCGGATTTGCCAAACAGAAAGTTTATAACCCGCGAGCGCATGTTGAGTCCTTGTTGGTGTCTCCAATTTCTAAGGCAAGTGCACGTCAGAGGTCAGGGCGTGCCGGAAGAACTCAGCCGGGAAAATGCTTTAGACTATACACTCAGAAAAGTTTCCACAACAATCTTGAGCAAGAGACATATCCAGAGATATTGAGATCAAACCTTGCAAATACAGTACTTACCATGAAAAAACTAGGAGTAGAGGATTTGAGTCATTATGATTTCATGGATCCTCCTGCTCCTGAGACAATGATGGATGCACTAGAGGTTTTGTATTTTTTGGGAGCCCTTGATGAAGATGGTAACTTGACCATGGTGGGGGAGATTATGAGTGAATTCCCACTAGACCCTCAGATGTCAAAGATGCTCATTGTCAGCCCTCAATACAACTGCTCCAATGAGATTTTGTCAATTTCTGCGATGCTTTCCGTGCCCACCCCATTTATCCGGCCTAGGGATGAGGTTCAAGAAGCCGACGAAGCCAAAGCTGCGTTTGCCCACATTGATGGAGATCACCTCACTTTGCTCAATGTGTATCATGCTTACAAGCAACACAATGAGGATCCATCCTGGTGCTATGACAATTATCTCAGTCATAAGGCATTGAAGGCTGCAGACAATGTTAGGCAGCAGCTGATGCGCATTATGGCTCGTCTTAACCTCAAGCGATGTAGTACTGACTTAAGCAGCCCTGACTACTACATCAACATAAGAAAGGCTCTGCTGGCTGGATATTTCAGGCAGGTGGCTCATCTACAACGCAGCGGACAGTACCTTACTAGAAAAGAGAAACAAGTAGTACATTTGCATCCCTCAAATTCTCTGGATCACAAACCAGAGTTTGTGATCTACAACGAGTATGTCTTGACAAGCAGGAGTTTTATCCGAACAGTGACCCAGATAAGTGGTGAATGGCTAGTCGAATACAACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

698

Amino Acids

79.52

Weight (kDa)

6.93

Isoelectric Point (pI)

49.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	78 - 240	2.7e-08	DEAD/DEAH box helicase
AAA_22	PF13401	86 - 222	8.3e-07	AAA domain
Helicase_C	PF00271	277 - 411	5.5e-11	Helicase conserved C-terminal domain
WHD_HA2	PF04408	474 - 502	1.9e-10	Helicase associated domain (HA2), winged-helix
HA2_C	PF21010	503 - 562	1.4e-14	Helicase associated domain (HA2), ratchet-like
OB_NTP_bind	PF07717	624 - 696	7.8e-21	Oligonucleotide/oligosaccharide-binding (OB)-fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1146
AarI	CACCTGC	1 cut(s)	1894
AasI	GACNNNNNNGTC	1 cut(s)	59
Acc16I	TGCGCA	1 cut(s)	1802
Acc36I	ACCTGC	1 cut(s)	1894
AccB1I	GGYRCC	1 cut(s)	257
AccB7I	CCANNNNNTGG	1 cut(s)	95
AccII	CGCG	1 cut(s)	1153
AciI	CCGC	5 cut(s)	430, 507, 919, 1151, 1926
AclWI	GGATC	7 cut(s)	184, 560, 1385, 1398, 1718, 1731, 1995
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	3 cut(s)	1038, 1496, 1978
AcuI	CTGAAG	1 cut(s)	701
AfaI	GTAC	8 cut(s)	22, 182, 394, 527, 1338, 1837, 1934, 1962
AfiI	CCNNNNNNNGG	6 cut(s)	95, 409, 493, 685, 1479, 1615
AflII	CTTAAG	2 cut(s)	194, 1843
AgsI	TTSAA	5 cut(s)	523, 664, 999, 1628, 1768
AhlI	ACTAGT	1 cut(s)	128
AjiI	CACGTC	1 cut(s)	1205
AjnI	CCWGG	3 cut(s)	760, 865, 1730
AluBI	AGCT	7 cut(s)	40, 332, 608, 674, 685, 1649, 1795
AluI	AGCT	7 cut(s)	40, 332, 608, 674, 685, 1649, 1795
Alw21I	GWGCWC	3 cut(s)	503, 745, 1204
Alw26I	GTCTC	4 cut(s)	67, 1185, 1289, 1400
Alw44I	GTGCAC	3 cut(s)	499, 741, 1200
AlwI	GGATC	7 cut(s)	184, 560, 1385, 1398, 1718, 1731, 1995
AlwNI	CAGNNNCTG	1 cut(s)	1795
AoxI	GGCC	4 cut(s)	164, 624, 711, 1610
ApaLI	GTGCAC	3 cut(s)	499, 741, 1200
ApeKI	GCWGC	9 cut(s)	366, 413, 824, 1649, 1772, 1789, 1792, 1848, 1923
ApoI	RAATTY	3 cut(s)	1038, 1496, 1978
ArsI	GACNNNNNNTTYG	2 cut(s)	1109, 1141
AseI	ATTAAT	2 cut(s)	927, 939
Asp700I	GAANNNNTTC	1 cut(s)	1271
AspA2I	CCTAGG	1 cut(s)	1613
AspLEI	GCGC	2 cut(s)	1159, 1803
AspS9I	GGNCC	1 cut(s)	971
AsuC2I	CCSGG	2 cut(s)	1122, 1239
AsuHPI	GGTGA	3 cut(s)	293, 1667, 2081
AvaII	GGWCC	1 cut(s)	971
AvrII	CCTAGG	1 cut(s)	1613
BaeGI	GKGCMC	5 cut(s)	260, 503, 745, 1204, 1596
BalI	TGGCCA	1 cut(s)	626
BamHI	GGATCC	2 cut(s)	1390, 1723
BanI	GGYRCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	1450
BbsI	GAAGAC	1 cut(s)	518
Bbv12I	GWGCWC	3 cut(s)	503, 745, 1204
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	9 cut(s)	378, 400, 836, 1636, 1759, 1801, 1804, 1860, 1935
BccI	CCATC	7 cut(s)	442, 530, 1091, 1408, 1454, 1661, 1735
BceAI	ACGGC	1 cut(s)	417
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	3 cut(s)	762, 867, 1732
BclI	TGATCA	2 cut(s)	948, 1033
BcnI	CCSGG	2 cut(s)	1122, 1239
BcoDI	GTCTC	4 cut(s)	67, 1185, 1289, 1400
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	7 cut(s)	129, 1355, 1424, 1505, 1614, 1941, 2078
BfmI	CTRYAG	1 cut(s)	1773
BfrI	CTTAAG	2 cut(s)	194, 1843
BfuAI	ACCTGC	1 cut(s)	1894
BlnI	CCTAGG	1 cut(s)	1613
BmcAI	AGTACT	3 cut(s)	527, 1338, 1837
Bme1390I	CCNGG	5 cut(s)	762, 867, 1122, 1239, 1732
Bme18I	GGWCC	1 cut(s)	971
BmgBI	CACGTC	1 cut(s)	1205
BmgT120I	GGNCC	1 cut(s)	971
BmiI	GGNNCC	5 cut(s)	259, 864, 1392, 1447, 1725
BmrFI	CCNGG	5 cut(s)	762, 867, 1122, 1239, 1732
BmsI	GCATC	8 cut(s)	492, 901, 975, 1408, 1515, 1572, 1788, 1978
BpiI	GAAGAC	1 cut(s)	518
BplI	GAGNNNNNCTC	4 cut(s)	688, 720, 1662, 1694
BpmI	CTGGAG	2 cut(s)	888, 912
Bpu10I	CCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	5 cut(s)	236, 635, 728, 1307, 1808
BpuMI	CCSGG	2 cut(s)	1122, 1239
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	1671
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	3 cut(s)	1120, 1473, 1613
BsaXI	ACNNNNNCTCC	4 cut(s)	456, 486, 1538, 1568
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 409, 493, 685, 1479, 1615
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	3 cut(s)	163, 895, 958
Bse3DI	GCAATG	3 cut(s)	423, 564, 1071
Bse8I	GATNNNNATC	1 cut(s)	1671
BseBI	CCWGG	3 cut(s)	762, 867, 1732
BseDI	CCNNGG	3 cut(s)	1120, 1473, 1613
BseGI	GGATG	7 cut(s)	65, 457, 483, 1423, 1624, 1727, 1969
BseJI	GATNNNNATC	1 cut(s)	1671
BseLI	CCNNNNNNNGG	6 cut(s)	95, 409, 493, 685, 1479, 1615
BseMI	GCAATG	3 cut(s)	423, 564, 1071
BseNI	ACTGG	3 cut(s)	163, 895, 958
BseRI	GAGGAG	6 cut(s)	94, 117, 217, 458, 509, 911
BseSI	GKGCMC	5 cut(s)	260, 503, 745, 1204, 1596
BseXI	GCAGC	9 cut(s)	378, 400, 836, 1636, 1759, 1801, 1804, 1860, 1935
Bsh1236I	CGCG	1 cut(s)	1153
BshFI	GGCC	4 cut(s)	166, 626, 713, 1612
BshNI	GGYRCC	1 cut(s)	257
BsiHKAI	GWGCWC	3 cut(s)	503, 745, 1204
BsiSI	CCGG	5 cut(s)	288, 1122, 1224, 1238, 1609
BslFI	GGGAC	1 cut(s)	412
BslI	CCNNNNNNNGG	6 cut(s)	95, 409, 493, 685, 1479, 1615
BsmAI	GTCTC	4 cut(s)	67, 1185, 1289, 1400
BsmFI	GGGAC	1 cut(s)	412
BsnI	GGCC	4 cut(s)	166, 626, 713, 1612
Bso31I	GGTCTC	1 cut(s)	67
Bsp1286I	GDGCHC	6 cut(s)	260, 503, 745, 1204, 1450, 1596
Bsp19I	CCATGG	1 cut(s)	1473
BspACI	CCGC	5 cut(s)	430, 507, 919, 1151, 1926
BspANI	GGCC	4 cut(s)	166, 626, 713, 1612
BspFNI	CGCG	1 cut(s)	1153
BspHI	TCATGA	1 cut(s)	610
BspLI	GGNNCC	5 cut(s)	259, 864, 1392, 1447, 1725
BspMAI	CTGCAG	1 cut(s)	1777
BspMI	ACCTGC	1 cut(s)	1894
BspPI	GGATC	7 cut(s)	184, 560, 1385, 1398, 1718, 1731, 1995
BspT107I	GGYRCC	1 cut(s)	257
BspTI	CTTAAG	2 cut(s)	194, 1843
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	3 cut(s)	423, 564, 1071
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	3 cut(s)	163, 895, 958
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	3 cut(s)	1120, 1473, 1613
BssT1I	CCWWGG	2 cut(s)	1473, 1613
Bst2UI	CCWGG	3 cut(s)	762, 867, 1732
Bst4CI	ACNGT	4 cut(s)	838, 1336, 1932, 2053
Bst6I	CTCTTC	3 cut(s)	26, 194, 462
BstAFI	CTTAAG	2 cut(s)	194, 1843
BstAPI	GCANNNNNTGC	1 cut(s)	1798
BstBAI	YACGTR	1 cut(s)	817
BstC8I	GCNNGC	5 cut(s)	767, 916, 1155, 1221, 1887
BstDSI	CCRYGG	1 cut(s)	1473
BstF5I	GGATG	7 cut(s)	65, 457, 483, 1423, 1624, 1727, 1969
BstFNI	CGCG	1 cut(s)	1153
BstHHI	GCGC	2 cut(s)	1159, 1803
BstMAI	GTCTC	4 cut(s)	67, 1185, 1289, 1400
BstMWI	GCNNNNNNNGC	7 cut(s)	1591, 1640, 1649, 1655, 1769, 1798, 1886
BstNI	CCWGG	3 cut(s)	762, 867, 1732
BstNSI	RCATGY	2 cut(s)	918, 1163
BstSCI	CCNGG	5 cut(s)	760, 865, 1120, 1237, 1730
BstSFI	CTRYAG	1 cut(s)	1773
BstSLI	GKGCMC	5 cut(s)	260, 503, 745, 1204, 1596
BstSNI	TACGTA	1 cut(s)	817
BstUI	CGCG	1 cut(s)	1153
BstV1I	GCAGC	9 cut(s)	378, 400, 836, 1636, 1759, 1801, 1804, 1860, 1935
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	4 cut(s)	189, 565, 1390, 1723
BstXI	CCANNNNNNTGG	2 cut(s)	1667, 2066
BstYI	RGATCY	4 cut(s)	189, 565, 1390, 1723
BsuRI	GGCC	4 cut(s)	166, 626, 713, 1612
BtgI	CCRYGG	1 cut(s)	1473
BtgZI	GCGATG	2 cut(s)	1595, 1843
BtrI	CACGTC	1 cut(s)	1205
BtsCI	GGATG	7 cut(s)	65, 457, 483, 1423, 1624, 1727, 1969
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	5 cut(s)	298, 429, 627, 965, 2058
BveI	ACCTGC	1 cut(s)	1894
Cac8I	GCNNGC	5 cut(s)	767, 916, 1155, 1221, 1887
CaiI	CAGNNNCTG	1 cut(s)	1795
CciI	TCATGA	1 cut(s)	610
CfoI	GCGC	2 cut(s)	1159, 1803
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	1 cut(s)	971
Csp6I	GTAC	8 cut(s)	21, 181, 393, 526, 1337, 1836, 1933, 1961
CviAII	CATG	7 cut(s)	611, 915, 1160, 1345, 1387, 1474, 1700
CviQI	GTAC	8 cut(s)	21, 181, 393, 526, 1337, 1836, 1933, 1961
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	3 cut(s)	26, 194, 462
EarI	CTCTTC	3 cut(s)	26, 194, 462
Eco105I	TACGTA	1 cut(s)	817
Eco130I	CCWWGG	2 cut(s)	1473, 1613
Eco147I	AGGCCT	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	1450
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	971
Eco57I	CTGAAG	1 cut(s)	701
EcoRI	GAATTC	1 cut(s)	1496
EcoRII	CCWGG	3 cut(s)	760, 865, 1730
EcoT14I	CCWWGG	2 cut(s)	1473, 1613
EcoT22I	ATGCAT	1 cut(s)	916
EcoT38I	GRGCYC	1 cut(s)	1450
ErhI	CCWWGG	2 cut(s)	1473, 1613
FaeI	CATG	7 cut(s)	614, 918, 1163, 1348, 1390, 1477, 1703
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	1 cut(s)	412
FatI	CATG	7 cut(s)	610, 914, 1159, 1344, 1386, 1473, 1699
FauI	CCCGC	3 cut(s)	437, 500, 1158
FbaI	TGATCA	2 cut(s)	948, 1033
FokI	GGATG	7 cut(s)	52, 464, 470, 1430, 1631, 1714, 1956
FriOI	GRGCYC	1 cut(s)	1450
FspAI	RTGCGCAY	1 cut(s)	1802
FspBI	CTAG	7 cut(s)	129, 1355, 1424, 1505, 1614, 1941, 2078
FspI	TGCGCA	1 cut(s)	1802
GlaI	GCGC	2 cut(s)	1158, 1802
GsuI	CTGGAG	2 cut(s)	888, 912
HaeIII	GGCC	4 cut(s)	166, 626, 713, 1612
HapII	CCGG	5 cut(s)	288, 1122, 1224, 1238, 1609
HhaI	GCGC	2 cut(s)	1159, 1803
Hin1II	CATG	7 cut(s)	614, 918, 1163, 1348, 1390, 1477, 1703
Hin6I	GCGC	2 cut(s)	1157, 1801
HinP1I	GCGC	2 cut(s)	1157, 1801
HincII	GTYRAC	2 cut(s)	1065, 1117
HindII	GTYRAC	2 cut(s)	1065, 1117
HinfI	GANTC	6 cut(s)	71, 310, 646, 847, 1166, 1372
HpaII	CCGG	5 cut(s)	288, 1122, 1224, 1238, 1609
HphI	GGTGA	3 cut(s)	293, 1667, 2081
Hpy166II	GTNNAC	7 cut(s)	156, 393, 501, 743, 1065, 1117, 1202
Hpy8I	GTNNAC	7 cut(s)	156, 393, 501, 743, 1065, 1117, 1202
Hpy99I	CGWCG	2 cut(s)	408, 1640
HpyAV	CCTTC	2 cut(s)	156, 1762
HpyCH4III	ACNGT	4 cut(s)	838, 1336, 1932, 2053
HpyCH4IV	ACGT	2 cut(s)	816, 1204
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1591, 1640, 1649, 1655, 1769, 1798, 1886
HpySE526I	ACGT	2 cut(s)	816, 1204
Hsp92II	CATG	7 cut(s)	614, 918, 1163, 1348, 1390, 1477, 1703
HspAI	GCGC	2 cut(s)	1157, 1801
Ksp22I	TGATCA	2 cut(s)	948, 1033
LmnI	GCTCC	6 cut(s)	81, 104, 868, 1405, 1445, 1559
Lsp1109I	GCAGC	9 cut(s)	378, 400, 836, 1636, 1759, 1801, 1804, 1860, 1935
LweI	GCATC	8 cut(s)	492, 901, 975, 1408, 1515, 1572, 1788, 1978
MaeI	CTAG	7 cut(s)	129, 1355, 1424, 1505, 1614, 1941, 2078
MaeII	ACGT	2 cut(s)	816, 1204
MaeIII	GTNAC	3 cut(s)	476, 1463, 2053
MflI	RGATCY	4 cut(s)	189, 565, 1390, 1723
MhlI	GDGCHC	6 cut(s)	260, 503, 745, 1204, 1450, 1596
MlsI	TGGCCA	1 cut(s)	626
MluNI	TGGCCA	1 cut(s)	626
MlyI	GAGTC	3 cut(s)	65, 1175, 1381
MmeI	TCCRAC	1 cut(s)	93
Mox20I	TGGCCA	1 cut(s)	626
Mph1103I	ATGCAT	1 cut(s)	916
MroXI	GAANNNNTTC	1 cut(s)	1271
MscI	TGGCCA	1 cut(s)	626
MseI	TTAA	8 cut(s)	195, 530, 548, 735, 927, 939, 1818, 1844
MslI	CAYNNNNRTG	2 cut(s)	1665, 1732
Msp20I	TGGCCA	1 cut(s)	626
MspA1I	CMGCKG	3 cut(s)	507, 1795, 1926
MspCI	CTTAAG	2 cut(s)	194, 1843
MspI	CCGG	5 cut(s)	288, 1122, 1224, 1238, 1609
MspR9I	CCNGG	5 cut(s)	762, 867, 1122, 1239, 1732
MvaI	CCWGG	3 cut(s)	762, 867, 1732
MvnI	CGCG	1 cut(s)	1153
MwoI	GCNNNNNNNGC	7 cut(s)	1591, 1640, 1649, 1655, 1769, 1798, 1886
NciI	CCSGG	2 cut(s)	1122, 1239
NcoI	CCATGG	1 cut(s)	1473
NlaIII	CATG	7 cut(s)	614, 918, 1163, 1348, 1390, 1477, 1703
NlaIV	GGNNCC	5 cut(s)	259, 864, 1392, 1447, 1725
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	1 cut(s)	2053
NsbI	TGCGCA	1 cut(s)	1802
NsiI	ATGCAT	1 cut(s)	916
NspI	RCATGY	2 cut(s)	918, 1163
PaeI	GCATGC	1 cut(s)	918
PagI	TCATGA	1 cut(s)	610
PaqCI	CACCTGC	1 cut(s)	1894
PceI	AGGCCT	1 cut(s)	166
PdmI	GAANNNNTTC	1 cut(s)	1271
PfeI	GAWTC	3 cut(s)	310, 646, 847
PflMI	CCANNNNNTGG	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	865
PleI	GAGTC	3 cut(s)	65, 1174, 1380
PpsI	GAGTC	3 cut(s)	65, 1174, 1380
Ppu21I	YACGTR	1 cut(s)	817
PshBI	ATTAAT	2 cut(s)	927, 939
PsiI	TTATAA	1 cut(s)	1146
Psp6I	CCWGG	3 cut(s)	760, 865, 1730
PspGI	CCWGG	3 cut(s)	760, 865, 1730
PspN4I	GGNNCC	5 cut(s)	259, 864, 1392, 1447, 1725
PspPI	GGNCC	1 cut(s)	971
PstI	CTGCAG	1 cut(s)	1777
PstNI	CAGNNNCTG	1 cut(s)	1795
PsuI	RGATCY	4 cut(s)	189, 565, 1390, 1723
PvuII	CAGCTG	1 cut(s)	1795
RsaI	GTAC	8 cut(s)	22, 182, 394, 527, 1338, 1837, 1934, 1962
RsaNI	GTAC	8 cut(s)	21, 181, 393, 526, 1337, 1836, 1933, 1961
RseI	CAYNNNNRTG	2 cut(s)	1665, 1732
SaqAI	TTAA	8 cut(s)	195, 530, 548, 735, 927, 939, 1818, 1844
Sau96I	GGNCC	1 cut(s)	971
ScaI	AGTACT	3 cut(s)	527, 1338, 1837
SchI	GAGTC	3 cut(s)	65, 1175, 1381
ScrFI	CCNGG	5 cut(s)	762, 867, 1122, 1239, 1732
SduI	GDGCHC	6 cut(s)	260, 503, 745, 1204, 1450, 1596
SfaNI	GCATC	8 cut(s)	492, 901, 975, 1408, 1515, 1572, 1788, 1978
SfcI	CTRYAG	1 cut(s)	1773
SinI	GGWCC	1 cut(s)	971
SmiMI	CAYNNNNRTG	2 cut(s)	1665, 1732
SmlI	CTYRAG	7 cut(s)	194, 251, 650, 707, 1286, 1823, 1843
SmoI	CTYRAG	7 cut(s)	194, 251, 650, 707, 1286, 1823, 1843
SnaBI	TACGTA	1 cut(s)	817
SpeI	ACTAGT	1 cut(s)	128
SphI	GCATGC	1 cut(s)	918
SseBI	AGGCCT	1 cut(s)	166
SsiI	CCGC	5 cut(s)	430, 507, 919, 1151, 1926
SspMI	CTAG	7 cut(s)	129, 1355, 1424, 1505, 1614, 1941, 2078
StuI	AGGCCT	1 cut(s)	166
StyD4I	CCNGG	5 cut(s)	760, 865, 1120, 1237, 1730
StyI	CCWWGG	2 cut(s)	1473, 1613
TaaI	ACNGT	4 cut(s)	838, 1336, 1932, 2053
TaiI	ACGT	2 cut(s)	819, 1207
TaqI	TCGA	6 cut(s)	51, 123, 406, 492, 724, 2082
TaqII	GACCGA	1 cut(s)	49
TatI	WGTACW	5 cut(s)	392, 525, 1336, 1835, 1960
TauI	GCSGC	1 cut(s)	921
TfiI	GAWTC	3 cut(s)	310, 646, 847
Tru1I	TTAA	8 cut(s)	195, 530, 548, 735, 927, 939, 1818, 1844
Tru9I	TTAA	8 cut(s)	195, 530, 548, 735, 927, 939, 1818, 1844
TscAI	CASTG	5 cut(s)	298, 429, 634, 965, 2058
TseFI	GTSAC	1 cut(s)	2053
TseI	GCWGC	9 cut(s)	366, 413, 824, 1649, 1772, 1789, 1792, 1848, 1923
Tsp45I	GTSAC	1 cut(s)	2053
TspDTI	ATGAA	4 cut(s)	627, 1361, 1375, 1470
TspGWI	ACGGA	3 cut(s)	8, 476, 1579
TspRI	CASTG	5 cut(s)	298, 429, 634, 965, 2058
Van91I	CCANNNNNTGG	1 cut(s)	95
Vha464I	CTTAAG	2 cut(s)	194, 1843
VneI	GTGCAC	3 cut(s)	499, 741, 1200
VpaK11BI	GGWCC	1 cut(s)	971
VspI	ATTAAT	2 cut(s)	927, 939
XapI	RAATTY	3 cut(s)	1038, 1496, 1978
XceI	RCATGY	2 cut(s)	918, 1163
XcmI	CCANNNNNNNNNTGG	1 cut(s)	965
XmaJI	CCTAGG	1 cut(s)	1613
XmnI	GAANNNNTTC	1 cut(s)	1271
XspI	CTAG	7 cut(s)	129, 1355, 1424, 1505, 1614, 1941, 2078
ZrmI	AGTACT	3 cut(s)	527, 1338, 1837
Zsp2I	ATGCAT	1 cut(s)	916

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.