Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Forward (+)

9113799 .. 9116711

Gene Structure 2913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00168200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCCACACTCCAGCAAATCCTTCTGCAACTCCAAGCAAGTCCCTTTACCATCCCTATTGCTCTTGCTGCTCTGTCATGGCTCTTCTTGTATCACATCAGAGTTTCATACTACAGTAAAATGAGTGCTATTCCCAAGCTCCCTCCTGTGCCAGTGGTTCCTGGGCTGCCGGTGATTGGGAATTTGCTGCAACTCAAGGAGAAGAAACCATACAAAACTTTCACAAGGTGGGCTGAGGAGTATGGGCCAATCTATTCGATCAGGACTGGTGCTTCCACCATGGTCGTTCTCAATACCTCCGAAGTTGCCAAAGAGAAGAAACACCGGAGCAACAGAGATACCTTGAGAGCAAATGTCTTAAGCCGATTACATTCTCATGTTAAGAATTCTCCTCAAGAAGCTGTGAATTTCAGAAGAATCTTTGAGTCAGAACTCTTTGGAATTGCAGTGAAGCAGGCCTTTGGAAAGGACATAGAAAAGCCCATTTATGTGGAGGAACTTGGTACTACACTTTCAAGAGATGAGATCTCTAAGGTTCTAGTGCTTGACATAATGGAGGGTGCAATTGAGGAACTCAATTGTTATATCGACTTCTTGCTTTCTGAAGGGAAAACACTGACAATGGACCAAATATCCATGTTGCTTTGGGAGACGGTTATTGAAACAGCTGATACTACAATGGTCACAACAGAATGGGCTATGTATGAAATTTCTAAAGATCCAACGCGACAGGATCGGCTCTATCAGGAAATCCAAAAGGTTTGTGGATCAGAGACGGTTACAGAGGAACACTTGTCCCAACTGCCGTACCTGAATGCAGTTTTCCATGAAACTCTAAGGAAGCACAGTCCAGCTGCGTTGGTTCCTTTAAGATATGCACACGAAGATACCCAACTAGGAGGTTACTACATTCCAGCTGGAACTGAGCCCCGAGGAATGGAAGCCAGAGAGATTTTGGACCCGAAATATGATCCGATGGATTTGTACAAGACCATGGCTTTTGGGGCTGGAAAAAGGGTATGTGCTGGTTCCCTTCAGGCAATGTTAATAGCGTGCCCGACGATTGGTAGGCTGGTGCAGGAGTTTGAGTGGAAGCTGAGAGCTGGAGAAGAAGAAAATGTAGATACTGTTGGGCTCACCACTCACAAACGCTATCCAATGCAGGCAATCCTGAAGCCAAGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

395

Amino Acids

44.79

Weight (kDa)

6.35

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	53 - 119	9.8e-09	Cytochrome P450
p450	PF00067	196 - 309	1.2e-28	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	727
AclWI	GGATC	4 cut(s)	713, 741, 775, 965
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	4 cut(s)	181, 385, 406, 708
AcuI	CTGAAG	2 cut(s)	624, 1019
AdeI	CACNNNGTG	1 cut(s)	228
AfaI	GTAC	3 cut(s)	505, 809, 986
AfiI	CCNNNNNNNGG	3 cut(s)	176, 937, 1064
AflII	CTTAAG	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	516, 662
AjnI	CCWGG	1 cut(s)	160
AluBI	AGCT	7 cut(s)	139, 401, 668, 854, 917, 1096, 1103
AluI	AGCT	7 cut(s)	139, 401, 668, 854, 917, 1096, 1103
Alw26I	GTCTC	2 cut(s)	644, 767
AlwI	GGATC	4 cut(s)	713, 741, 775, 965
Ama87I	CYCGRG	1 cut(s)	930
AoxI	GGCC	3 cut(s)	3, 245, 456
ApeKI	GCWGC	4 cut(s)	68, 166, 187, 854
ApoI	RAATTY	4 cut(s)	181, 385, 406, 708
AspS9I	GGNCC	3 cut(s)	245, 625, 958
AsuHPI	GGTGA	2 cut(s)	184, 1129
AvaI	CYCGRG	1 cut(s)	930
AvaII	GGWCC	2 cut(s)	625, 958
BaeGI	GKGCMC	1 cut(s)	1058
BaeI	ACNNNNGTAYC	2 cut(s)	791, 824
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	2 cut(s)	930, 1137
BarI	GAAGNNNNNNTAC	2 cut(s)	194, 226
BbvCI	CCTCAGC	1 cut(s)	234
BbvI	GCAGC	4 cut(s)	55, 153, 174, 841
BccI	CCATC	2 cut(s)	59, 970
BceAI	ACGGC	1 cut(s)	790
BciT130I	CCWGG	1 cut(s)	162
BcoDI	GTCTC	2 cut(s)	644, 767
BfaI	CTAG	2 cut(s)	539, 896
BfmI	CTRYAG	1 cut(s)	112
BfrI	CTTAAG	1 cut(s)	358
BglII	AGATCT	1 cut(s)	525
BisI	GCNGC	4 cut(s)	69, 167, 188, 855
BlsI	GCNGC	4 cut(s)	70, 168, 189, 856
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	625, 958
BmeT110I	CYCGRG	1 cut(s)	930
BmgT120I	GGNCC	3 cut(s)	245, 625, 958
BmiI	GGNNCC	4 cut(s)	159, 864, 960, 1030
BmrFI	CCNGG	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	1125
Bpu10I	CCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	3 cut(s)	179, 364, 378
BsaJI	CCNNGG	4 cut(s)	161, 279, 931, 993
BsaWI	WCCGGW	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	1073, 1103
Bsc4I	CCNNNNNNNGG	3 cut(s)	176, 937, 1064
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	152, 271
Bse3DI	GCAATG	1 cut(s)	1047
BseBI	CCWGG	1 cut(s)	162
BseDI	CCNNGG	4 cut(s)	161, 279, 931, 993
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	3 cut(s)	176, 937, 1064
BseMI	GCAATG	1 cut(s)	1047
BseMII	CTCAG	3 cut(s)	225, 915, 1088
BseNI	ACTGG	2 cut(s)	152, 271
BseRI	GAGGAG	2 cut(s)	251, 381
BseSI	GKGCMC	1 cut(s)	1058
BseXI	GCAGC	4 cut(s)	55, 153, 174, 841
BsgI	GTGCAG	1 cut(s)	1097
Bsh1236I	CGCG	1 cut(s)	727
BshFI	GGCC	3 cut(s)	5, 247, 458
BsiHKCI	CYCGRG	1 cut(s)	930
BsiSI	CCGG	2 cut(s)	170, 325
BslFI	GGGAC	2 cut(s)	27, 781
BslI	CCNNNNNNNGG	3 cut(s)	176, 937, 1064
BsmAI	GTCTC	2 cut(s)	644, 767
BsmBI	CGTCTC	2 cut(s)	644, 767
BsmFI	GGGAC	2 cut(s)	27, 781
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	3 cut(s)	5, 247, 458
BsoBI	CYCGRG	1 cut(s)	930
Bsp1286I	GDGCHC	3 cut(s)	930, 1058, 1137
Bsp1407I	TGTACA	1 cut(s)	984
Bsp143I	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
Bsp19I	CCATGG	2 cut(s)	279, 993
BspANI	GGCC	3 cut(s)	5, 247, 458
BspCNI	CTCAG	3 cut(s)	226, 916, 1089
BspFNI	CGCG	1 cut(s)	727
BspLI	GGNNCC	4 cut(s)	159, 864, 960, 1030
BspPI	GGATC	4 cut(s)	713, 741, 775, 965
BspQI	GCTCTTC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	1047
BsrFI	RCCGGY	1 cut(s)	169
BsrGI	TGTACA	1 cut(s)	984
BsrI	ACTGG	2 cut(s)	152, 271
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	4 cut(s)	161, 279, 931, 993
BssMI	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
BssT1I	CCWWGG	2 cut(s)	279, 993
Bst2UI	CCWGG	1 cut(s)	162
Bst4CI	ACNGT	5 cut(s)	116, 655, 778, 848, 1129
Bst6I	CTCTTC	1 cut(s)	89
BstAFI	CTTAAG	1 cut(s)	358
BstAUI	TGTACA	1 cut(s)	984
BstC8I	GCNNGC	3 cut(s)	456, 1054, 1164
BstDEI	CTNAG	5 cut(s)	234, 531, 836, 924, 1097
BstDSI	CCRYGG	2 cut(s)	279, 993
BstF5I	GGATG	1 cut(s)	51
BstFNI	CGCG	1 cut(s)	727
BstKTI	GATC	6 cut(s)	261, 528, 721, 736, 770, 973
BstMAI	GTCTC	2 cut(s)	644, 767
BstMBI	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 1004
BstNI	CCWGG	1 cut(s)	162
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	112
BstSLI	GKGCMC	1 cut(s)	1058
BstUI	CGCG	1 cut(s)	727
BstV1I	GCAGC	4 cut(s)	55, 153, 174, 841
BstX2I	RGATCY	2 cut(s)	525, 718
BstXI	CCANNNNNNTGG	1 cut(s)	490
BstYI	RGATCY	2 cut(s)	525, 718
BsuRI	GGCC	3 cut(s)	5, 247, 458
BtgI	CCRYGG	2 cut(s)	279, 993
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	159, 453, 614
Cac8I	GCNNGC	3 cut(s)	456, 1054, 1164
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	3 cut(s)	245, 625, 958
Csp6I	GTAC	3 cut(s)	504, 808, 985
CviAII	CATG	6 cut(s)	78, 280, 377, 637, 827, 994
CviQI	GTAC	3 cut(s)	504, 808, 985
DdeI	CTNAG	5 cut(s)	234, 531, 836, 924, 1097
DpnI	GATC	6 cut(s)	260, 527, 720, 735, 769, 972
DpnII	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
DraIII	CACNNNGTG	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	2 cut(s)	279, 993
Eco147I	AGGCCT	1 cut(s)	458
Eco24I	GRGCYC	2 cut(s)	930, 1137
Eco47I	GGWCC	2 cut(s)	625, 958
Eco57I	CTGAAG	2 cut(s)	624, 1019
Eco88I	CYCGRG	1 cut(s)	930
EcoRI	GAATTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	160
EcoT14I	CCWWGG	2 cut(s)	279, 993
EcoT38I	GRGCYC	2 cut(s)	930, 1137
ErhI	CCWWGG	2 cut(s)	279, 993
Esp3I	CGTCTC	2 cut(s)	644, 767
FaeI	CATG	6 cut(s)	81, 283, 380, 640, 830, 997
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FaqI	GGGAC	2 cut(s)	27, 781
FatI	CATG	6 cut(s)	77, 279, 376, 636, 826, 993
Fnu4HI	GCNGC	4 cut(s)	69, 167, 188, 855
FokI	GGATG	1 cut(s)	38
FriOI	GRGCYC	2 cut(s)	930, 1137
Fsp4HI	GCNGC	4 cut(s)	69, 167, 188, 855
FspBI	CTAG	2 cut(s)	539, 896
GluI	GCNGC	4 cut(s)	69, 167, 188, 855
GsuI	CTGGAG	1 cut(s)	1125
HaeIII	GGCC	3 cut(s)	5, 247, 458
HapII	CCGG	2 cut(s)	170, 325
Hin1II	CATG	6 cut(s)	81, 283, 380, 640, 830, 997
HinfI	GANTC	2 cut(s)	417, 425
HpaII	CCGG	2 cut(s)	170, 325
HphI	GGTGA	2 cut(s)	184, 1129
Hpy188I	TCNGA	7 cut(s)	101, 301, 413, 430, 604, 772, 975
Hpy188III	TCNNGA	5 cut(s)	262, 395, 516, 746, 1171
Hpy99I	CGWCG	1 cut(s)	1063
HpyAV	CCTTC	3 cut(s)	32, 599, 1043
HpyCH4III	ACNGT	5 cut(s)	116, 655, 778, 848, 1129
HpyCH4V	TGCA	8 cut(s)	28, 190, 446, 563, 818, 878, 1078, 1162
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 1004
HpyF3I	CTNAG	5 cut(s)	234, 531, 836, 924, 1097
Hsp92II	CATG	6 cut(s)	81, 283, 380, 640, 830, 997
Kzo9I	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
LguI	GCTCTTC	1 cut(s)	89
LmnI	GCTCC	2 cut(s)	144, 327
Lsp1109I	GCAGC	4 cut(s)	55, 153, 174, 841
MaeI	CTAG	2 cut(s)	539, 896
MaeIII	GTNAC	3 cut(s)	682, 778, 902
MalI	GATC	6 cut(s)	260, 527, 720, 735, 769, 972
MboI	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
MboII	GAAGA	7 cut(s)	76, 214, 328, 426, 896, 1121, 1124
MfeI	CAATTG	2 cut(s)	564, 577
MflI	RGATCY	2 cut(s)	525, 718
MhlI	GDGCHC	3 cut(s)	930, 1058, 1137
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	181, 385, 406, 441, 564, 577, 708
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	434
MmeI	TCCRAC	1 cut(s)	746
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	359, 381, 869, 1046
MslI	CAYNNNNRTG	2 cut(s)	375, 488
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	668, 854, 917
MspCI	CTTAAG	1 cut(s)	358
MspI	CCGG	2 cut(s)	170, 325
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	2 cut(s)	564, 577
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	162
MvnI	CGCG	1 cut(s)	727
MwoI	GCNNNNNNNGC	2 cut(s)	68, 1004
NcoI	CCATGG	2 cut(s)	279, 993
NdeII	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
NlaIII	CATG	6 cut(s)	81, 283, 380, 640, 830, 997
NlaIV	GGNNCC	4 cut(s)	159, 864, 960, 1030
NmuCI	GTSAC	1 cut(s)	682
PceI	AGGCCT	1 cut(s)	458
PciSI	GCTCTTC	1 cut(s)	89
PctI	GAATGC	1 cut(s)	820
PfeI	GAWTC	1 cut(s)	417
PkrI	GCNGC	4 cut(s)	70, 168, 189, 856
PleI	GAGTC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	433
Psp6I	CCWGG	1 cut(s)	160
PspGI	CCWGG	1 cut(s)	160
PspN4I	GGNNCC	4 cut(s)	159, 864, 960, 1030
PspPI	GGNCC	3 cut(s)	245, 625, 958
PsuI	RGATCY	2 cut(s)	525, 718
PvuII	CAGCTG	3 cut(s)	668, 854, 917
RsaI	GTAC	3 cut(s)	505, 809, 986
RsaNI	GTAC	3 cut(s)	504, 808, 985
RseI	CAYNNNNRTG	2 cut(s)	375, 488
SapI	GCTCTTC	1 cut(s)	89
SaqAI	TTAA	4 cut(s)	359, 381, 869, 1046
SatI	GCNGC	4 cut(s)	69, 167, 188, 855
Sau3AI	GATC	6 cut(s)	258, 525, 718, 733, 767, 970
Sau96I	GGNCC	3 cut(s)	245, 625, 958
SchI	GAGTC	1 cut(s)	434
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	3 cut(s)	930, 1058, 1137
SfcI	CTRYAG	1 cut(s)	112
SinI	GGWCC	2 cut(s)	625, 958
SmiMI	CAYNNNNRTG	2 cut(s)	375, 488
SmlI	CTYRAG	4 cut(s)	194, 343, 358, 393
SmoI	CTYRAG	4 cut(s)	194, 343, 358, 393
Sse9I	AATT	7 cut(s)	181, 385, 406, 441, 564, 577, 708
SseBI	AGGCCT	1 cut(s)	458
SspMI	CTAG	2 cut(s)	539, 896
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	279, 993
TaaI	ACNGT	5 cut(s)	116, 655, 778, 848, 1129
TaqI	TCGA	2 cut(s)	257, 588
TasI	AATT	7 cut(s)	181, 385, 406, 441, 564, 577, 708
TatI	WGTACW	1 cut(s)	984
TfiI	GAWTC	1 cut(s)	417
Tru1I	TTAA	4 cut(s)	359, 381, 869, 1046
Tru9I	TTAA	4 cut(s)	359, 381, 869, 1046
TscAI	CASTG	3 cut(s)	159, 453, 621
TseFI	GTSAC	1 cut(s)	682
TseI	GCWGC	4 cut(s)	68, 166, 187, 854
Tsp45I	GTSAC	1 cut(s)	682
TspDTI	ATGAA	3 cut(s)	96, 720, 843
TspRI	CASTG	3 cut(s)	159, 453, 621
Vha464I	CTTAAG	1 cut(s)	358
VpaK11BI	GGWCC	2 cut(s)	625, 958
XapI	RAATTY	4 cut(s)	181, 385, 406, 708
XcmI	CCANNNNNNNNNTGG	2 cut(s)	761, 952
XspI	CTAG	2 cut(s)	539, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.