Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005144

Physical Location & Seq

Genomic Coordinates Reverse (-)

60186079 .. 60189589

Gene Structure 3511 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG405200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGTGACCAGATATTCATCCATGTCAACCAGAAAGCTATCAAACGCACTAAAGATTCTTACTGCTGATAAATGTATGGTTGCAATAAGTGACTACAACGATTTTCACAAGATGATAAAGCGATACATACTCTCAAATGTTCTTGGAGCCAATGCTCAGAAGAAACACCGGAGCAACAGAGATACCTTGAGAGCAAATGTCTCAAGCCGATTACATTCTCATGTTAAGAATTCTCCTCAAGAAGCTGTGAATTTCAGAAGAATCTTTGAGTCAGAACTCTTTGGAATTGCAGTGAAGCAGGCCTTTGGAAAGGACATAGAAAAGCCCATTTATGTGGAGGAACTTGGTACTACACTTTCAAGAGATGAGATCTTTAAGGTTCTAGTGCTTGACATAATGGAGGGTGCAATTGAGGTTGATTGGAGAGATTTCTTCCCTTACCTGAGTTGGATTCCTAATAAGACCATGGAAACAAAAATTCAGCAACTATATTCCCGCAGGAAAGCAGTGATGACTACCCTGATCAATGAGCAGAAGAAGCGAATTGCCTCAGGAGAGGAACTCAATTGTTATATCGACTTCTTGCTTTCTGAAGGGAAAACACTGACAATGGACCAAATATCCATGTTACTTTGGGAGACAGTTATTGAAACAGCAGATACTACAATGGTCACAACAGAATGGGCTATGTATGAAATTTCTAAAGATCCAACGCGACAGGATCGGCTCTATCAGGAAATCCAAAAGGTTTGTGGATCGGAGACGGTTACAGAGGAACACTTGTCCCAACTGCCGTACCTGAATGCAGTTTTCCATGAAACTCTAAGGAAGCACAGTCCAGTTGCGTTGGTTCCTTTAAGATATGCACACGAAGATACCCAACTAGGAGGTTACTACATTCCAGCTGGAACTGAGATTGCTATAAACATATATGGGTGTCACATGGACAAGCATCAATGGGAAAGCCCCGAGGAATGGAAGCCAGAGAGGTTTTTGGACCCGAAATATGATCTGATGGATTTGTACAAGACCATGGCTTTTGGGGCTGGAAAAAGGGTATGTGCTGGTTCCCTTCAGGCAATGTTAATAGCGTGCCCGACGATTGGTAGGCTGGTGCAGGAGTTTGAGTGGAAGCTGAGAGCTGGAGAAGAAGAAAATGTAGCTACTGTTGGGCTCACCACTCACAAACGCAATCCAATGCAGGCAGTCCTGAAGCCAAGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009403 GO:0009404 GO:0009507 GO:0009526 GO:0009527 GO:0009536 GO:0009685 GO:0009686 GO:0009707 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009941 GO:0009987 GO:0010033 GO:0010241 GO:0010476 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0019752 GO:0019867 GO:0023052 GO:0031090 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032870 GO:0033331 GO:0033993 GO:0042170 GO:0042214 GO:0042221 GO:0042445 GO:0042446 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051501 GO:0051502 GO:0051716 GO:0052314 GO:0052315 GO:0052615 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0098588 GO:0098805 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01100 ko01110 map00904 map01100 map01110

Pfam Domains

Protein Families

p450

Protein Analysis

408

Amino Acids

47.01

Weight (kDa)

7.17

Isoelectric Point (pI)

47.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	129 - 386	1.6e-61	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005144)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25900
fragaria_vesca	FvH4_2g22670 FvH4_2g40650 FvH4_2g40650
malus_domestica	MD08G1039800.v1.1 MD08G1040000.v1.1 MD15G1034400.v1.1 MD15G1034700.v1.1
prunus_persica	Prupe.1G388500_v2.0.a1
pyrus_communis	pycom08g03220 pycom15g03170
rosa_chinensis	RchiOBHm_Chr6g0299961 RchiOBHm_Chr6g0300021
rosa_laevigata	RLG00000011372
rosa_multiflora	Rmu_sc0010665.1_g000001
rosa_roxburghii	Rroxscaffold_7G00168200 Rroxscaffold_7G00168230
rosa_rugosa	Rorug06G0293200 Rorug06G0293500 Rorug06G0293600
rosa_samantha	Rh6AG404800 Rh6AG405200 Rh6BG413100 Rh6BG413500 Rh6CG419200 Rh6CG420600 Rh6DG405900 Rh6DG406200
rosa_wichuraiana	Rw6G035420 Rw6G035460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	715
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	3 cut(s)	701, 729, 763
AcsI	RAATTY	4 cut(s)	229, 250, 477, 696
AcuI	CTGAAG	2 cut(s)	612, 1058
AfaI	GTAC	3 cut(s)	349, 797, 1025
AfiI	CCNNNNNNNGG	2 cut(s)	975, 1103
AgsI	TTSAA	2 cut(s)	360, 650
AluBI	AGCT	6 cut(s)	37, 245, 905, 1135, 1142, 1163
AluI	AGCT	6 cut(s)	37, 245, 905, 1135, 1142, 1163
Alw26I	GTCTC	3 cut(s)	205, 632, 755
AlwI	GGATC	3 cut(s)	701, 729, 763
Ama87I	CYCGRG	1 cut(s)	968
AoxI	GGCC	1 cut(s)	300
ApoI	RAATTY	4 cut(s)	229, 250, 477, 696
AspS9I	GGNCC	2 cut(s)	613, 997
AsuHPI	GGTGA	2 cut(s)	16, 1168
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	2 cut(s)	613, 997
AxyI	CCTNAGG	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	1097
BaeI	ACNNNNGTAYC	2 cut(s)	779, 812
BanII	GRGCYC	1 cut(s)	1176
BccI	CCATC	1 cut(s)	1009
BceAI	ACGGC	1 cut(s)	778
BclI	TGATCA	1 cut(s)	522
BcoDI	GTCTC	3 cut(s)	205, 632, 755
BfaI	CTAG	2 cut(s)	383, 884
BglII	AGATCT	1 cut(s)	369
Bme18I	GGWCC	2 cut(s)	613, 997
BmeT110I	CYCGRG	1 cut(s)	968
BmgT120I	GGNCC	2 cut(s)	613, 997
BmiI	GGNNCC	4 cut(s)	148, 852, 999, 1069
BmsI	GCATC	1 cut(s)	961
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
BpmI	CTGGAG	1 cut(s)	1164
BpuEI	CTTGAG	3 cut(s)	187, 208, 222
BsaBI	GATNNNNATC	1 cut(s)	16
BsaJI	CCNNGG	3 cut(s)	465, 969, 1032
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bsc4I	CCNNNNNNNGG	2 cut(s)	975, 1103
Bse1I	ACTGG	1 cut(s)	839
Bse21I	CCTNAGG	1 cut(s)	550
Bse3DI	GCAATG	1 cut(s)	1086
Bse8I	GATNNNNATC	1 cut(s)	16
BseDI	CCNNGG	3 cut(s)	465, 969, 1032
BseGI	GGATG	1 cut(s)	17
BseJI	GATNNNNATC	1 cut(s)	16
BseLI	CCNNNNNNNGG	2 cut(s)	975, 1103
BseMI	GCAATG	1 cut(s)	1086
BseMII	CTCAG	5 cut(s)	170, 434, 564, 903, 1127
BseNI	ACTGG	1 cut(s)	839
BseRI	GAGGAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	1097
BsgI	GTGCAG	1 cut(s)	1136
Bsh1236I	CGCG	1 cut(s)	715
BshFI	GGCC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	769
BslI	CCNNNNNNNGG	2 cut(s)	975, 1103
BsmAI	GTCTC	3 cut(s)	205, 632, 755
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	1 cut(s)	769
BsmI	GAATGC	1 cut(s)	808
BsnI	GGCC	1 cut(s)	302
BsoBI	CYCGRG	1 cut(s)	968
Bsp1286I	GDGCHC	2 cut(s)	1097, 1176
Bsp1407I	TGTACA	1 cut(s)	1023
Bsp143I	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
Bsp19I	CCATGG	2 cut(s)	465, 1032
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	5 cut(s)	169, 435, 563, 904, 1128
BspFNI	CGCG	1 cut(s)	715
BspLI	GGNNCC	4 cut(s)	148, 852, 999, 1069
BspPI	GGATC	3 cut(s)	701, 729, 763
BsrDI	GCAATG	1 cut(s)	1086
BsrGI	TGTACA	1 cut(s)	1023
BsrI	ACTGG	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	465, 969, 1032
BssMI	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
BssT1I	CCWWGG	2 cut(s)	465, 1032
Bst4CI	ACNGT	4 cut(s)	643, 766, 836, 1168
BstAUI	TGTACA	1 cut(s)	1023
BstC8I	GCNNGC	3 cut(s)	300, 1093, 1203
BstDEI	CTNAG	6 cut(s)	156, 443, 550, 824, 912, 1136
BstDSI	CCRYGG	2 cut(s)	465, 1032
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	17
BstFNI	CGCG	1 cut(s)	715
BstKTI	GATC	6 cut(s)	372, 525, 709, 724, 758, 1012
BstMAI	GTCTC	3 cut(s)	205, 632, 755
BstMBI	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
BstMWI	GCNNNNNNNGC	2 cut(s)	538, 1043
BstPI	GGTNACC	1 cut(s)	4
BstSLI	GKGCMC	1 cut(s)	1097
BstUI	CGCG	1 cut(s)	715
BstX2I	RGATCY	2 cut(s)	369, 706
BstXI	CCANNNNNNTGG	1 cut(s)	334
BstYI	RGATCY	2 cut(s)	369, 706
Bsu36I	CCTNAGG	1 cut(s)	550
BsuRI	GGCC	1 cut(s)	302
BtgI	CCRYGG	2 cut(s)	465, 1032
BtsCI	GGATG	1 cut(s)	17
BtsI	GCAGTG	2 cut(s)	297, 513
BtsIMutI	CAGTG	3 cut(s)	297, 513, 602
Cac8I	GCNNGC	3 cut(s)	300, 1093, 1203
Cfr13I	GGNCC	2 cut(s)	613, 997
Csp6I	GTAC	3 cut(s)	348, 796, 1024
CviAII	CATG	7 cut(s)	22, 221, 466, 625, 815, 943, 1033
CviQI	GTAC	3 cut(s)	348, 796, 1024
DdeI	CTNAG	6 cut(s)	156, 443, 550, 824, 912, 1136
DpnI	GATC	6 cut(s)	371, 524, 708, 723, 757, 1011
DpnII	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
Eco130I	CCWWGG	2 cut(s)	465, 1032
Eco147I	AGGCCT	1 cut(s)	302
Eco24I	GRGCYC	1 cut(s)	1176
Eco47I	GGWCC	2 cut(s)	613, 997
Eco57I	CTGAAG	2 cut(s)	612, 1058
Eco81I	CCTNAGG	1 cut(s)	550
Eco88I	CYCGRG	1 cut(s)	968
Eco91I	GGTNACC	1 cut(s)	4
EcoO65I	GGTNACC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	229
EcoT14I	CCWWGG	2 cut(s)	465, 1032
EcoT38I	GRGCYC	1 cut(s)	1176
ErhI	CCWWGG	2 cut(s)	465, 1032
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	7 cut(s)	25, 224, 469, 628, 818, 946, 1036
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	769
FatI	CATG	7 cut(s)	21, 220, 465, 624, 814, 942, 1032
FauI	CCCGC	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	522
FokI	GGATG	1 cut(s)	4
FriOI	GRGCYC	1 cut(s)	1176
FspBI	CTAG	2 cut(s)	383, 884
GsuI	CTGGAG	1 cut(s)	1164
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	7 cut(s)	25, 224, 469, 628, 818, 946, 1036
HincII	GTYRAC	1 cut(s)	27
HindII	GTYRAC	1 cut(s)	27
HinfI	GANTC	4 cut(s)	55, 261, 269, 451
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	2 cut(s)	16, 1168
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	6 cut(s)	159, 257, 274, 592, 760, 1014
Hpy188III	TCNNGA	5 cut(s)	239, 360, 552, 734, 1210
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	1102
HpyAV	CCTTC	2 cut(s)	587, 1082
HpyCH4III	ACNGT	4 cut(s)	643, 766, 836, 1168
HpyCH4V	TGCA	7 cut(s)	83, 290, 407, 806, 866, 1117, 1201
HpyF10VI	GCNNNNNNNGC	2 cut(s)	538, 1043
HpyF3I	CTNAG	6 cut(s)	156, 443, 550, 824, 912, 1136
Hsp92II	CATG	7 cut(s)	25, 224, 469, 628, 818, 946, 1036
Ksp22I	TGATCA	1 cut(s)	522
Kzo9I	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
LmnI	GCTCC	2 cut(s)	146, 171
LweI	GCATC	1 cut(s)	961
MaeI	CTAG	2 cut(s)	383, 884
MaeIII	GTNAC	7 cut(s)	4, 89, 627, 670, 766, 890, 938
MalI	GATC	6 cut(s)	371, 524, 708, 723, 757, 1011
MboI	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
MboII	GAAGA	7 cut(s)	172, 270, 424, 547, 884, 1160, 1163
MfeI	CAATTG	2 cut(s)	408, 565
MflI	RGATCY	2 cut(s)	369, 706
MhlI	GDGCHC	2 cut(s)	1097, 1176
MluCI	AATT	8 cut(s)	229, 250, 285, 408, 477, 543, 565, 696
MlyI	GAGTC	1 cut(s)	278
MmeI	TCCRAC	2 cut(s)	428, 734
MseI	TTAA	4 cut(s)	225, 375, 857, 1085
MslI	CAYNNNNRTG	2 cut(s)	219, 332
MspA1I	CMGCKG	1 cut(s)	905
MspI	CCGG	1 cut(s)	169
MunI	CAATTG	2 cut(s)	408, 565
Mva1269I	GAATGC	1 cut(s)	808
MvnI	CGCG	1 cut(s)	715
MwoI	GCNNNNNNNGC	2 cut(s)	538, 1043
NcoI	CCATGG	2 cut(s)	465, 1032
NdeII	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
NlaIII	CATG	7 cut(s)	25, 224, 469, 628, 818, 946, 1036
NlaIV	GGNNCC	4 cut(s)	148, 852, 999, 1069
NmuCI	GTSAC	4 cut(s)	4, 89, 670, 938
PceI	AGGCCT	1 cut(s)	302
PctI	GAATGC	1 cut(s)	808
PfeI	GAWTC	3 cut(s)	55, 261, 451
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	4 cut(s)	148, 852, 999, 1069
PspPI	GGNCC	2 cut(s)	613, 997
PsuI	RGATCY	2 cut(s)	369, 706
PvuII	CAGCTG	1 cut(s)	905
RsaI	GTAC	3 cut(s)	349, 797, 1025
RsaNI	GTAC	3 cut(s)	348, 796, 1024
RseI	CAYNNNNRTG	2 cut(s)	219, 332
SaqAI	TTAA	4 cut(s)	225, 375, 857, 1085
Sau3AI	GATC	6 cut(s)	369, 522, 706, 721, 755, 1009
Sau96I	GGNCC	2 cut(s)	613, 997
SchI	GAGTC	1 cut(s)	278
SduI	GDGCHC	2 cut(s)	1097, 1176
SfaNI	GCATC	1 cut(s)	961
SinI	GGWCC	2 cut(s)	613, 997
SmiMI	CAYNNNNRTG	2 cut(s)	219, 332
SmlI	CTYRAG	3 cut(s)	187, 202, 237
SmoI	CTYRAG	3 cut(s)	187, 202, 237
Sse9I	AATT	8 cut(s)	229, 250, 285, 408, 477, 543, 565, 696
SseBI	AGGCCT	1 cut(s)	302
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	383, 884
StuI	AGGCCT	1 cut(s)	302
StyI	CCWWGG	2 cut(s)	465, 1032
TaaI	ACNGT	4 cut(s)	643, 766, 836, 1168
TaqI	TCGA	1 cut(s)	576
TasI	AATT	8 cut(s)	229, 250, 285, 408, 477, 543, 565, 696
TatI	WGTACW	1 cut(s)	1023
TfiI	GAWTC	3 cut(s)	55, 261, 451
Tru1I	TTAA	4 cut(s)	225, 375, 857, 1085
Tru9I	TTAA	4 cut(s)	225, 375, 857, 1085
TscAI	CASTG	3 cut(s)	297, 513, 609
TseFI	GTSAC	4 cut(s)	4, 89, 670, 938
Tsp45I	GTSAC	4 cut(s)	4, 89, 670, 938
TspDTI	ATGAA	3 cut(s)	6, 708, 831
TspRI	CASTG	3 cut(s)	297, 513, 609
VpaK11BI	GGWCC	2 cut(s)	613, 997
XapI	RAATTY	4 cut(s)	229, 250, 477, 696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XspI	CTAG	2 cut(s)	383, 884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.