pycom08g04010

Fasciclin-like arabinogalactan protein 20

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0020360
Physical Location & Seq
Forward (+)
3013656 .. 3014057
402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 402 bp
ATGGACAAAGATTCCATGGAGGCGTCTTTTGGTCATGGTTCCAAGGTTGACACTCTTCTGCCCGGTCATGCTCTCGTTCTTACTTCTCTGCCCACCGGCACTGCTTCTCTCAACCTAGTCAAAGTCACCAAGTGGGATGTGTACAACGACGGACGACTGATTGTTCATGGGGTTGAGAACTTCTTCGATCCGGCTTTCCAAACTCTCAGCTATCCGCAGTATGACGTGATGAAGGTGAAAGAGGATTCTTCTCAAGGATTTTTCTGGTGGCCAAAGGCAGTGGAGATTATTAGTTGGTTTCTCTTACTAGCAGTGCTGGCTGCTTTCACCTATCTGCTAATTCCTGCATTTATTTTTTGTAATAAGCCGACTGAGGATGGAGAGTATGCACTTCTGCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

134

Amino Acids

14.95

Weight (kDa)

4.98

Isoelectric Point (pI)

22.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020360)

Species Orthologous Gene IDs
malus_domestica MD03G1035100.v1.1 MD03G1107500.v1.1 MD15G1046300.v1.1
prunus_persica Prupe.1G100500_v2.0.a1 Prupe.1G100600_v2.0.a1
pyrus_communis pycom08g04010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 182
AcoI YGGCCR 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 132
AfaI GTAC 1 cut(s) 143
AjiI CACGTC 1 cut(s) 226
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
AlwI GGATC 1 cut(s) 182
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 182
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 3 cut(s) 118, 247, 319
BalI TGGCCA 1 cut(s) 271
BbvI GCAGC 1 cut(s) 307
BccI CCATC 1 cut(s) 371
BcnI CCSGG 1 cut(s) 63
BfaI CTAG 2 cut(s) 116, 308
BisI GCNGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 15, 42
Bse118I RCCGGY 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 15, 42
BseGI GGATG 2 cut(s) 142, 382
BseMII CTCAG 2 cut(s) 220, 363
BseXI GCAGC 1 cut(s) 307
BshFI GGCC 1 cut(s) 271
BsiSI CCGG 3 cut(s) 63, 96, 191
BsnI GGCC 1 cut(s) 271
Bsp1407I TGTACA 1 cut(s) 141
Bsp143I GATC 1 cut(s) 187
Bsp19I CCATGG 1 cut(s) 15
BspACI CCGC 1 cut(s) 215
BspANI GGCC 1 cut(s) 271
BspCNI CTCAG 2 cut(s) 219, 364
BspLI GGNNCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 182
BsrFI RCCGGY 1 cut(s) 95
BsrGI TGTACA 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 15, 42
BssMI GATC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 23
BssT1I CCWWGG 2 cut(s) 15, 42
Bst6I CTCTTC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 23
BstAUI TGTACA 1 cut(s) 141
BstC8I GCNNGC 1 cut(s) 318
BstDEI CTNAG 2 cut(s) 206, 372
BstDSI CCRYGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 142, 382
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 271
BtgI CCRYGG 1 cut(s) 15
BtrI CACGTC 1 cut(s) 226
BtsCI GGATG 2 cut(s) 142, 382
BtsI GCAGTG 3 cut(s) 99, 285, 318
BtsIMutI CAGTG 3 cut(s) 99, 285, 318
Cac8I GCNNGC 1 cut(s) 318
Cfr10I RCCGGY 1 cut(s) 95
CseI GACGC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 142
CspCI CAANNNNNGTGG 2 cut(s) 261, 296
CviAII CATG 4 cut(s) 16, 35, 68, 167
CviJI RGCY 5 cut(s) 194, 210, 271, 320, 367
CviKI_1 RGCY 5 cut(s) 194, 210, 271, 320, 367
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 2 cut(s) 206, 372
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DraIII CACNNNGTG 1 cut(s) 132
EaeI YGGCCR 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco130I CCWWGG 2 cut(s) 15, 42
EcoT14I CCWWGG 2 cut(s) 15, 42
ErhI CCWWGG 2 cut(s) 15, 42
FaeI CATG 4 cut(s) 19, 38, 71, 170
FaiI YATR 6 cut(s) 17, 36, 69, 168, 222, 387
FatI CATG 4 cut(s) 15, 34, 67, 166
Fnu4HI GCNGC 1 cut(s) 321
FokI GGATG 2 cut(s) 149, 389
Fsp4HI GCNGC 1 cut(s) 321
FspBI CTAG 2 cut(s) 116, 308
GluI GCNGC 1 cut(s) 321
HaeIII GGCC 1 cut(s) 271
HapII CCGG 3 cut(s) 63, 96, 191
HgaI GACGC 1 cut(s) 12
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 4 cut(s) 19, 38, 71, 170
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 2 cut(s) 11, 245
HpaII CCGG 3 cut(s) 63, 96, 191
HphI GGTGA 3 cut(s) 118, 247, 319
Hpy166II GTNNAC 2 cut(s) 49, 142
Hpy8I GTNNAC 2 cut(s) 49, 142
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 3 cut(s) 347, 389, 397
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 2 cut(s) 206, 372
HpySE526I ACGT 1 cut(s) 225
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 4 cut(s) 19, 38, 71, 170
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 6 cut(s) 76, 109, 204, 250, 302, 357
Lsp1109I GCAGC 1 cut(s) 307
MaeI CTAG 2 cut(s) 116, 308
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 124
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 47, 175, 240
MlsI TGGCCA 1 cut(s) 271
MluCI AATT 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 271
MnlI CCTC 3 cut(s) 13, 235, 367
Mox20I TGGCCA 1 cut(s) 271
MroXI GAANNNNTTC 1 cut(s) 182
MscI TGGCCA 1 cut(s) 271
Msp20I TGGCCA 1 cut(s) 271
MspI CCGG 3 cut(s) 63, 96, 191
MspR9I CCNGG 1 cut(s) 63
MwoI GCNNNNNNNGC 1 cut(s) 317
NciI CCSGG 1 cut(s) 63
NcoI CCATGG 1 cut(s) 15
NdeII GATC 1 cut(s) 187
NlaIII CATG 4 cut(s) 19, 38, 71, 170
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 1 cut(s) 124
PdmI GAANNNNTTC 1 cut(s) 182
PfeI GAWTC 2 cut(s) 11, 245
PkrI GCNGC 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 40
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
SatI GCNGC 1 cut(s) 321
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 63
SetI ASST 6 cut(s) 48, 117, 212, 228, 237, 332
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 1 cut(s) 339
SsiI CCGC 1 cut(s) 215
SspMI CTAG 2 cut(s) 116, 308
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 2 cut(s) 15, 42
TaiI ACGT 1 cut(s) 228
TaqI TCGA 1 cut(s) 186
TasI AATT 1 cut(s) 339
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 11, 245
TscAI CASTG 3 cut(s) 106, 285, 318
TseFI GTSAC 1 cut(s) 124
TseI GCWGC 1 cut(s) 320
Tsp45I GTSAC 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 155, 245
TspGWI ACGGA 1 cut(s) 165
TspRI CASTG 3 cut(s) 106, 285, 318
XmnI GAANNNNTTC 1 cut(s) 182
XspI CTAG 2 cut(s) 116, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.