Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014996

Physical Location & Seq

Genomic Coordinates Reverse (-)

4902450 .. 4904693

Gene Structure 2244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1383 bp

ATGTTGTCAAAGAAAGCAAGTTGTGACTCGCATGGCCAAGACTCATCCTACTTCTTGGGATGGCAGGAATACGAGAAGAACCCTTATGATCAAGTTCAAAATCCAAATGGTATCATTCAGATGGGACTTGCAGAGAATCAGCTTTCATTTGACCTTATTGAGTCATGGCTTGCAAGCAATCCCGATGCACTGGAGTTGAAAAGAAATGGAGAATCTGTTTTCAAAGAGTTGGCTCTCTTTCAAGACTACAACGGCTTCCCTGCTTTCAAGAATGAGATGGTAGATTTCATGGCAAGCATGAGAGGAAACAAAGTAAAATTTGATCCTAACAAGCTTGTGCTCACCGCCGGTTCAACTTCTGCCAACGAGACTCTTATGTTTTGCCTTGCTGATCGTGGCGACGCCTTCCTCCTCCCGATTCCATACTACCCAGGGTTTGATAGAGATCTGAAGTGGCGTACCGAAGCAGAAATTGTTCCAATAAAATGCACAAGTGCAAATGGATACAAAATCACTGAGACTGCATTGGAAGAAGCCTACCAACAAGCCCAAAAATTCAACCTAAAAGTTAAAGGAGTATTGGTCACAAATCCTTCAAACCCTTTAGGCACAACAATGACTCGACTTGAACTCAATCACCTCATAGACTTTGCCATTGAAAAAGAAATACACATAATAAGCGACGAAATATACTCGGGCACCGTCTTCAACTCCCCAAGTTTTGTAAGCATTGCAGAAGCTCTAACTGAGAGAAACCTAGAAGATGCCGAAGTATGGAATCGTTGTCACATTGTGTACAGCCTCTCTAAGGATCTGGGGCTGCCAGGTTTTCGAGTAGGCATGATTTACTCCAACAATCAAGCCGTTGTGTCTGCAGCTACAAAGATGTCAAGCTTCGGACTTGTCTCTGCACAAACTCAGTACACGCTTTCCCAAATGCTCAAAGACAAGAAATTTACCGCCAACTACATGGAGGAGAATCAAAAGAGGCTTAAAAGAAGGAAGGAGATGCTTGTTTGTGGGCTCAAAGGTGCAGGTATTAGGTGTTTGGAAAGCAATGCTGGGTTGTTTTGCTGGGTGGACATGAGGCACCTTTTGCAGTCCAACACTTTTGAAGCTGAAAAGAAGCTTTGGAAGAAAGTGGTTTGTGAATTCGGATTGAATATCTCTCCCGGTTCTTCTTGCCATTGCTCTGAACCCGGTTGGTTCAGAATGTGCTTTGCAAACATGTCAGAAGAAACCCTAATGGTTGCAATGCAACGTATCAAGGCCCTCGTTGAATCCACCATCGTTCCTCAGCAAACAGGACTGTCTAAATCCAGGTGGTTAAAGAACAAGTGGGTTTTCCAATTGGCTTCATACGAGCAGGAACCAGACCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006082 GO:0006520 GO:0006807 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009987 GO:0016053 GO:0016829 GO:0016846 GO:0016847 GO:0018871 GO:0019752 GO:0032787 GO:0042218 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0046394 GO:0071704 GO:0072330 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 ko01110 map00270 map01100 map01110

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

461

Amino Acids

52.12

Weight (kDa)

6.17

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014996)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G08040
fragaria_vesca	FvH4_2g32470 FvH4_3g04180
malus_domestica	MD08G1076500.v1.1 MD15G1145400.v1.1
prunus_persica	Prupe.1G417800_v2.0.a1
pyrus_communis	pycom08g06340
rosa_chinensis	RchiOBHm_Chr6g0310191
rosa_laevigata	RLG00000010501
rosa_multiflora	Rmu_sc0008163.1_g000012
rosa_roxburghii	Rroxscaffold_7G00158760
rosa_rugosa	Rorug06G0378100
rosa_samantha	Rh6BG501800 Rh6CG506800 Rh6DG492900
rosa_wichuraiana	Rw6G042830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1025
AccB1I	GGYRCC	2 cut(s)	698, 1089
AciI	CCGC	2 cut(s)	345, 960
AclWI	GGATC	2 cut(s)	317, 819
AcoI	YGGCCR	1 cut(s)	34
AcsI	RAATTY	4 cut(s)	317, 554, 953, 1151
AcuI	CTGAAG	1 cut(s)	470
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	793
AfaI	GTAC	3 cut(s)	460, 797, 923
AfiI	CCNNNNNNNGG	2 cut(s)	774, 808
AflIII	ACRYGT	1 cut(s)	1227
AjnI	CCWGG	3 cut(s)	430, 823, 1319
AluBI	AGCT	7 cut(s)	142, 334, 740, 878, 894, 1118, 1129
AluI	AGCT	7 cut(s)	142, 334, 740, 878, 894, 1118, 1129
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	3 cut(s)	362, 512, 910
AlwI	GGATC	2 cut(s)	317, 819
Ama87I	CYCGRG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	34, 1269
ApeKI	GCWGC	2 cut(s)	820, 875
ApoI	RAATTY	4 cut(s)	317, 554, 953, 1151
Asp700I	GAANNNNTTC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	1270
AsuC2I	CCSGG	2 cut(s)	1173, 1200
AsuHPI	GGTGA	2 cut(s)	334, 629
AvaI	CYCGRG	1 cut(s)	694
BaeGI	GKGCMC	1 cut(s)	701
BalI	TGGCCA	1 cut(s)	36
BanI	GGYRCC	2 cut(s)	698, 1089
BanII	GRGCYC	1 cut(s)	1026
BbsI	GAAGAC	1 cut(s)	697
Bbv12I	GWGCWC	1 cut(s)	342
BbvCI	CCTCAGC	1 cut(s)	1296
BbvI	GCAGC	2 cut(s)	807, 887
BccI	CCATC	4 cut(s)	54, 115, 271, 1295
BceAI	ACGGC	2 cut(s)	268, 848
BciT130I	CCWGG	3 cut(s)	432, 825, 1321
BciVI	GTATCC	1 cut(s)	497
BclI	TGATCA	1 cut(s)	88
BcnI	CCSGG	2 cut(s)	1173, 1200
BcoDI	GTCTC	3 cut(s)	362, 512, 910
BfaI	CTAG	1 cut(s)	758
BfmI	CTRYAG	1 cut(s)	873
BfuAI	ACCTGC	1 cut(s)	1025
BfuI	GTATCC	1 cut(s)	497
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	2 cut(s)	821, 876
BlsI	GCNGC	2 cut(s)	822, 877
Bme1390I	CCNGG	5 cut(s)	432, 825, 1173, 1200, 1321
BmeT110I	CYCGRG	1 cut(s)	694
BmgT120I	GGNCC	1 cut(s)	1270
BmiI	GGNNCC	3 cut(s)	700, 1091, 1371
BmrFI	CCNGG	5 cut(s)	432, 825, 1173, 1200, 1321
BmsI	GCATC	3 cut(s)	175, 754, 999
BpiI	GAAGAC	1 cut(s)	697
BpmI	CTGGAG	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	1296
BpuMI	CCSGG	2 cut(s)	1173, 1200
BsaBI	GATNNNNATC	1 cut(s)	444
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	430, 431
BsaXI	ACNNNNNCTCC	4 cut(s)	201, 231, 567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	774, 808
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	1 cut(s)	195
Bse3DI	GCAATG	4 cut(s)	729, 1063, 1186, 1260
Bse8I	GATNNNNATC	1 cut(s)	444
BseBI	CCWGG	3 cut(s)	432, 825, 1321
BseDI	CCNNGG	2 cut(s)	430, 431
BseGI	GGATG	2 cut(s)	44, 65
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	774, 808
BseMI	GCAATG	4 cut(s)	729, 1063, 1186, 1260
BseMII	CTCAG	4 cut(s)	507, 738, 932, 1310
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	2 cut(s)	401, 989
BseSI	GKGCMC	1 cut(s)	701
BseXI	GCAGC	2 cut(s)	807, 887
BseYI	CCCAGC	2 cut(s)	1061, 1074
BsgI	GTGCAG	2 cut(s)	894, 1053
BshFI	GGCC	2 cut(s)	36, 1271
BshNI	GGYRCC	2 cut(s)	698, 1089
BsiHKAI	GWGCWC	1 cut(s)	342
BsiHKCI	CYCGRG	1 cut(s)	694
BsiSI	CCGG	3 cut(s)	348, 1173, 1200
BslFI	GGGAC	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	774, 808
BsmAI	GTCTC	3 cut(s)	362, 512, 910
BsmFI	GGGAC	1 cut(s)	138
BsnI	GGCC	2 cut(s)	36, 1271
BsoBI	CYCGRG	1 cut(s)	694
Bsp1286I	GDGCHC	3 cut(s)	342, 701, 1026
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	5 cut(s)	88, 322, 391, 445, 811
BspACI	CCGC	2 cut(s)	345, 960
BspANI	GGCC	2 cut(s)	36, 1271
BspCNI	CTCAG	4 cut(s)	508, 739, 931, 1309
BspLI	GGNNCC	3 cut(s)	700, 1091, 1371
BspMAI	CTGCAG	1 cut(s)	877
BspMI	ACCTGC	1 cut(s)	1025
BspPI	GGATC	2 cut(s)	317, 819
BspT107I	GGYRCC	2 cut(s)	698, 1089
BsrDI	GCAATG	4 cut(s)	729, 1063, 1186, 1260
BsrFI	RCCGGY	1 cut(s)	347
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	430, 431
BssMI	GATC	5 cut(s)	88, 322, 391, 445, 811
BssNI	GRCGYC	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	432, 825, 1321
Bst4CI	ACNGT	3 cut(s)	703, 1311, 1379
BstACI	GRCGYC	1 cut(s)	402
BstAPI	GCANNNNNTGC	1 cut(s)	1096
BstAUI	TGTACA	1 cut(s)	795
BstC8I	GCNNGC	3 cut(s)	171, 175, 295
BstDEI	CTNAG	5 cut(s)	516, 747, 807, 918, 1296
BstENI	CCTNNNNNAGG	1 cut(s)	806
BstF5I	GGATG	2 cut(s)	44, 65
BstKTI	GATC	5 cut(s)	91, 325, 394, 448, 814
BstMAI	GTCTC	3 cut(s)	362, 512, 910
BstMBI	GATC	5 cut(s)	88, 322, 391, 445, 811
BstMWI	GCNNNNNNNGC	1 cut(s)	1096
BstNI	CCWGG	3 cut(s)	432, 825, 1321
BstNSI	RCATGY	1 cut(s)	1231
BstSCI	CCNGG	5 cut(s)	430, 823, 1171, 1198, 1319
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	807, 887
BstV2I	GAAGAC	1 cut(s)	697
BstX2I	RGATCY	2 cut(s)	445, 811
BstXI	CCANNNNNNTGG	1 cut(s)	970
BstYI	RGATCY	2 cut(s)	445, 811
BsuI	GTATCC	1 cut(s)	497
BsuRI	GGCC	2 cut(s)	36, 1271
BtsCI	GGATG	2 cut(s)	44, 65
BtsIMutI	CAGTG	2 cut(s)	188, 513
BveI	ACCTGC	1 cut(s)	1025
Cac8I	GCNNGC	3 cut(s)	171, 175, 295
Cfr10I	RCCGGY	1 cut(s)	347
Cfr13I	GGNCC	1 cut(s)	1270
CseI	GACGC	1 cut(s)	410
Csp6I	GTAC	3 cut(s)	459, 796, 922
CviAII	CATG	8 cut(s)	32, 165, 289, 298, 841, 970, 1084, 1228
CviQI	GTAC	3 cut(s)	459, 796, 922
DdeI	CTNAG	5 cut(s)	516, 747, 807, 918, 1296
DpnI	GATC	5 cut(s)	90, 324, 393, 447, 813
DpnII	GATC	5 cut(s)	88, 322, 391, 445, 811
DraIII	CACNNNGTG	1 cut(s)	793
EaeI	YGGCCR	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	1026
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	1 cut(s)	694
EcoNI	CCTNNNNNAGG	1 cut(s)	806
EcoO109I	RGGNCCY	1 cut(s)	1270
EcoRI	GAATTC	1 cut(s)	1151
EcoRII	CCWGG	3 cut(s)	430, 823, 1319
EcoT38I	GRGCYC	1 cut(s)	1026
FaeI	CATG	8 cut(s)	35, 168, 292, 301, 844, 973, 1087, 1231
FaqI	GGGAC	1 cut(s)	138
FatI	CATG	8 cut(s)	31, 164, 288, 297, 840, 969, 1083, 1227
FbaI	TGATCA	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	821, 876
FokI	GGATG	2 cut(s)	31, 72
FriOI	GRGCYC	1 cut(s)	1026
Fsp4HI	GCNGC	2 cut(s)	821, 876
FspBI	CTAG	1 cut(s)	758
GluI	GCNGC	2 cut(s)	821, 876
GsaI	CCCAGC	2 cut(s)	1065, 1078
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	36, 1271
HapII	CCGG	3 cut(s)	348, 1173, 1200
HgaI	GACGC	1 cut(s)	410
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	8 cut(s)	35, 168, 292, 301, 844, 973, 1087, 1231
HindIII	AAGCTT	3 cut(s)	332, 892, 1127
HpaII	CCGG	3 cut(s)	348, 1173, 1200
HphI	GGTGA	2 cut(s)	334, 629
Hpy166II	GTNNAC	3 cut(s)	796, 924, 1081
Hpy188I	TCNGA	7 cut(s)	120, 450, 899, 1157, 1195, 1211, 1234
Hpy188III	TCNNGA	4 cut(s)	182, 242, 268, 415
Hpy8I	GTNNAC	3 cut(s)	796, 924, 1081
Hpy99I	CGWCG	2 cut(s)	404, 686
HpyAV	CCTTC	4 cut(s)	415, 603, 993, 997
HpyCH4III	ACNGT	3 cut(s)	703, 1311, 1379
HpyCH4IV	ACGT	1 cut(s)	1261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1096
HpyF3I	CTNAG	5 cut(s)	516, 747, 807, 918, 1296
HpySE526I	ACGT	1 cut(s)	1261
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	8 cut(s)	35, 168, 292, 301, 844, 973, 1087, 1231
Ksp22I	TGATCA	1 cut(s)	88
Kzo9I	GATC	5 cut(s)	88, 322, 391, 445, 811
Lsp1109I	GCAGC	2 cut(s)	807, 887
LweI	GCATC	3 cut(s)	175, 754, 999
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	1 cut(s)	1261
MaeIII	GTNAC	3 cut(s)	23, 583, 785
MalI	GATC	5 cut(s)	90, 324, 393, 447, 813
MboI	GATC	5 cut(s)	88, 322, 391, 445, 811
MboII	GAAGA	7 cut(s)	88, 542, 697, 773, 1147, 1170, 1247
MfeI	CAATTG	1 cut(s)	1349
MflI	RGATCY	2 cut(s)	445, 811
MhlI	GDGCHC	3 cut(s)	342, 701, 1026
MlsI	TGGCCA	1 cut(s)	36
MluCI	AATT	6 cut(s)	317, 471, 554, 953, 1151, 1349
MluNI	TGGCCA	1 cut(s)	36
MlyI	GAGTC	5 cut(s)	20, 35, 170, 364, 613
MmeI	TCCRAC	2 cut(s)	876, 1128
Mox20I	TGGCCA	1 cut(s)	36
MroXI	GAANNNNTTC	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	36
MseI	TTAA	4 cut(s)	570, 993, 1328, 1381
MslI	CAYNNNNRTG	2 cut(s)	119, 614
Msp20I	TGGCCA	1 cut(s)	36
MspI	CCGG	3 cut(s)	348, 1173, 1200
MspR9I	CCNGG	5 cut(s)	432, 825, 1173, 1200, 1321
MunI	CAATTG	1 cut(s)	1349
MvaI	CCWGG	3 cut(s)	432, 825, 1321
MwoI	GCNNNNNNNGC	1 cut(s)	1096
NciI	CCSGG	2 cut(s)	1173, 1200
NdeII	GATC	5 cut(s)	88, 322, 391, 445, 811
NlaIII	CATG	8 cut(s)	35, 168, 292, 301, 844, 973, 1087, 1231
NlaIV	GGNNCC	3 cut(s)	700, 1091, 1371
NmuCI	GTSAC	3 cut(s)	23, 583, 785
NspI	RCATGY	1 cut(s)	1231
PasI	CCCWGGG	1 cut(s)	431
PciI	ACATGT	1 cut(s)	1227
PdmI	GAANNNNTTC	1 cut(s)	474
PfeI	GAWTC	6 cut(s)	136, 212, 418, 778, 979, 1280
PkrI	GCNGC	2 cut(s)	822, 877
PleI	GAGTC	5 cut(s)	20, 35, 169, 364, 613
PpsI	GAGTC	5 cut(s)	20, 35, 169, 364, 613
PscI	ACATGT	1 cut(s)	1227
Psp6I	CCWGG	3 cut(s)	430, 823, 1319
PspFI	CCCAGC	2 cut(s)	1061, 1074
PspGI	CCWGG	3 cut(s)	430, 823, 1319
PspN4I	GGNNCC	3 cut(s)	700, 1091, 1371
PspPI	GGNCC	1 cut(s)	1270
PstI	CTGCAG	1 cut(s)	877
PsuI	RGATCY	2 cut(s)	445, 811
RsaI	GTAC	3 cut(s)	460, 797, 923
RsaNI	GTAC	3 cut(s)	459, 796, 922
RseI	CAYNNNNRTG	2 cut(s)	119, 614
SaqAI	TTAA	4 cut(s)	570, 993, 1328, 1381
SatI	GCNGC	2 cut(s)	821, 876
Sau3AI	GATC	5 cut(s)	88, 322, 391, 445, 811
Sau96I	GGNCC	1 cut(s)	1270
SchI	GAGTC	5 cut(s)	20, 35, 170, 364, 613
ScrFI	CCNGG	5 cut(s)	432, 825, 1173, 1200, 1321
SduI	GDGCHC	3 cut(s)	342, 701, 1026
SfaNI	GCATC	3 cut(s)	175, 754, 999
SfcI	CTRYAG	1 cut(s)	873
SmiMI	CAYNNNNRTG	2 cut(s)	119, 614
Sse9I	AATT	6 cut(s)	317, 471, 554, 953, 1151, 1349
SsiI	CCGC	2 cut(s)	345, 960
SspMI	CTAG	1 cut(s)	758
StyD4I	CCNGG	5 cut(s)	430, 823, 1171, 1198, 1319
TaaI	ACNGT	3 cut(s)	703, 1311, 1379
TaiI	ACGT	1 cut(s)	1264
TaqI	TCGA	2 cut(s)	622, 832
TasI	AATT	6 cut(s)	317, 471, 554, 953, 1151, 1349
TatI	WGTACW	2 cut(s)	795, 921
TfiI	GAWTC	6 cut(s)	136, 212, 418, 778, 979, 1280
Tru1I	TTAA	4 cut(s)	570, 993, 1328, 1381
Tru9I	TTAA	4 cut(s)	570, 993, 1328, 1381
TscAI	CASTG	2 cut(s)	195, 520
TseFI	GTSAC	3 cut(s)	23, 583, 785
TseI	GCWGC	2 cut(s)	820, 875
Tsp45I	GTSAC	3 cut(s)	23, 583, 785
TspDTI	ATGAA	3 cut(s)	135, 277, 1347
TspRI	CASTG	2 cut(s)	195, 520
XagI	CCTNNNNNAGG	1 cut(s)	806
XapI	RAATTY	4 cut(s)	317, 554, 953, 1151
XceI	RCATGY	1 cut(s)	1231
XmnI	GAANNNNTTC	1 cut(s)	474
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.