Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0010638

Physical Location & Seq

Genomic Coordinates Reverse (-)

4923689 .. 4927447

Gene Structure 3759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGCGGATCAGTACTTGCTCGGATGGATCTTCGCCACCGTGCTGGGCGCCGTGTTTCTGTGCAGAGCGCTGGCGAGGAGGAACGGCGAGAGAGGGAGAGCTTTGGTGGAGGAGGAGAGGAGCGAGTGCGTGAAGAGCGTGATGGTCTCCAACGGAGAATGCAGATCCACTGACGGCGACGTCGACGTCATCATCGTCGGAGCTGGTGTTGCCGGCGCCGCTCTCGCTCACACTCTCGGCAAGGATGGACGTCGGGTGCATGTGATTGAACGAGACTTGACAGAGCCTGACCGAATTGTTGGCGAGCTGCTACAACCTGGAGGCTACCTCAAATTAATTGAGCTGGGACTAGAAGATTGTGTGGAGCAAATTGATGCTCAGCGGGTTTTTGGATATGCTCTTTTCAAGGATGGGAAAAATACTAAACTCTCTTACCCTTTGGAGAAATTTCACTCAGATGTGTCTGGAAGGAGCTTTCACAATGGCCGTTTCATACAGAGGATGCGGGAGAAGGCTGCAACTCTTCCCAATGTTCGATTGGAGCAAGGAACAGTTACTTCGCTACTTGAAGAAAAGGGAACAATTAAAGGTGTGCAATACAAGACTAAAACTGGCGAAGAGATGACCGCATATGCACCTCTTACTATAGTTTGTGATGGCTGTTTCTCCAACTTGCGTCGCTCTCTTTGTGATCCTAAGGTGGATGTGCCTTCTTGTTTTGTTGGGTTGATCCTGGAGAATTGCAATCTTCCACATGCTAATCACGGACATGTTATATTAGCAGACCCTTCTCCTATTTTGTTCTATCAAATCAGTAGCACGGAGGTTCGCTGTCTGGTTGATGTACCGGGACAAAAAGTTCCCTCCATTTCAAATGGTGAAATGGCAAAGTATTTGAAGACTGTGGTGGCTCCCCAGATTCCCCCTCAAATTTATGATTCCTTCATAGCTGCAGTGGATAAGGGTACCATAAGGACAATGCCGAACAGAAGCATGCCTGCCGCTCCCTACCCTACTCCTGGAGCTCTACTGATGGGGGATGCATTCAACATGCGCCACCCTCTAACAGGCGGAGGAATGACTGTGGCCTTGTCTGATATTGTTGTGCTGCGGAATCTTCTTAGGCCTTTGGGCAACCTAAATGATCCATCTACACTGTCCAAATATCTTGAATCCTTCTACACTCTCCGCAAGCCAGTGGCATCCACGATAAATACATTGGCTGGTGCCCTTTACAAGGTCTTTTCTTCTTCACCTGATCAAGCAAGGAAGGAAATGCGCCAGGCATGCTTTGACTATCTAAGTCTCGGAGGTGTATTCTCTATGGGACCAGTCTCTCTACTCTCGGGGTTGAACCCTCGTCCTTCGAGTTTGGTTCTCCATTTCTTCGCTGTCGCAGTGTATGGTGTTGGTCGTCTTTTGCTGCCATTTCCATCACCTAAACGTGCCTGGATTGGAGCCAGATTAATTTCGAGTGCCTCAGGAATCATCTTCCCCATAATCAAGGCAGAAGGAGTTAGACAAATGTTTTTCCCTGCAACTGTTCCGGCATATTACAGAGCGCCTGTCTTAAGCGAGAAGCAGATGAAGAAGACCGTAGATTGCGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0012505 GO:0016125 GO:0016126 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

538

Amino Acids

58.62

Weight (kDa)

8.94

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58440
fragaria_vesca	FvH4_2g32500 FvH4_2g32500 FvH4_2g32500
malus_domestica	MD08G1076800.v1.1 MD15G1064100.v1.1
prunus_persica	Prupe.1G418100_v2.0.a1 Prupe.1G418100_v2.0.a1
pyrus_communis	pycom08g06360 pycom15g06080
rosa_chinensis	RchiOBHm_Chr6g0310151
rosa_laevigata	RLG00000010504
rosa_multiflora	Rmu_sc0008163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158810
rosa_rugosa	Rorug06G0377700 Rorug06G0377800
rosa_samantha	Rh6AG491900 Rh6BG501500 Rh6CG506600
rosa_wichuraiana	Rw6G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	179, 185
AatII	GACGTC	3 cut(s)	183, 189, 253
Acc65I	GGTACC	1 cut(s)	965
AccB1I	GGYRCC	4 cut(s)	47, 215, 965, 1226
AccBSI	CCGCTC	2 cut(s)	221, 1004
AccI	GTMKAC	1 cut(s)	183
AciI	CCGC	9 cut(s)	5, 219, 382, 505, 627, 1002, 1071, 1111, 1189
AclWI	GGATC	6 cut(s)	15, 35, 159, 686, 724, 1139
AcoI	YGGCCR	1 cut(s)	484
AcsI	RAATTY	2 cut(s)	446, 930
AcyI	GRCGYC	5 cut(s)	48, 180, 186, 216, 250
AfaI	GTAC	3 cut(s)	14, 846, 967
AfeI	AGCGCT	1 cut(s)	69
AfiI	CCNNNNNNNGG	3 cut(s)	1019, 1067, 1237
AflII	CTTAAG	1 cut(s)	1570
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	8 cut(s)	269, 406, 569, 873, 898, 1048, 1172, 1354
AjnI	CCWGG	5 cut(s)	316, 732, 1018, 1281, 1448
AloI	GAACNNNNNNTCC	2 cut(s)	843, 875
AluBI	AGCT	7 cut(s)	101, 203, 307, 343, 474, 950, 1025
AluI	AGCT	7 cut(s)	101, 203, 307, 343, 474, 950, 1025
Alw21I	GWGCWC	1 cut(s)	1027
Alw26I	GTCTC	4 cut(s)	151, 267, 1310, 1339
AlwI	GGATC	6 cut(s)	15, 35, 159, 686, 724, 1139
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	1345
Aor51HI	AGCGCT	1 cut(s)	69
AoxI	GGCC	3 cut(s)	484, 1086, 1124
ApeKI	GCWGC	5 cut(s)	307, 515, 950, 1108, 1423
ApoI	RAATTY	2 cut(s)	446, 930
AseI	ATTAAT	2 cut(s)	335, 1466
Asp718I	GGTACC	1 cut(s)	965
AspLEI	GCGC	6 cut(s)	50, 70, 218, 1056, 1281, 1564
AspS9I	GGNCC	1 cut(s)	1328
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	3 cut(s)	890, 1245, 1428
AvaI	CYCGRG	1 cut(s)	1345
AvaII	GGWCC	1 cut(s)	1328
AxyI	CCTNAGG	2 cut(s)	696, 1480
BaeGI	GKGCMC	1 cut(s)	1231
BanI	GGYRCC	4 cut(s)	47, 215, 965, 1226
BanII	GRGCYC	1 cut(s)	1027
BbsI	GAAGAC	2 cut(s)	905, 1598
Bbv12I	GWGCWC	1 cut(s)	1027
BbvI	GCAGC	5 cut(s)	294, 502, 937, 1095, 1410
BccI	CCATC	8 cut(s)	18, 136, 239, 404, 650, 1027, 1156, 1441
BceAI	ACGGC	4 cut(s)	35, 100, 190, 471
BciT130I	CCWGG	5 cut(s)	318, 734, 1020, 1283, 1450
BclI	TGATCA	1 cut(s)	1258
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	4 cut(s)	151, 267, 1310, 1339
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	645, 951
BfoI	RGCGCY	4 cut(s)	51, 71, 219, 1565
BfrI	CTTAAG	1 cut(s)	1570
BisI	GCNGC	7 cut(s)	219, 308, 516, 951, 1002, 1109, 1424
BlpI	GCTNAGC	1 cut(s)	378
BlsI	GCNGC	7 cut(s)	220, 309, 517, 952, 1003, 1110, 1425
BmcAI	AGTACT	1 cut(s)	14
Bme1390I	CCNGG	6 cut(s)	318, 734, 849, 1020, 1283, 1450
Bme18I	GGWCC	1 cut(s)	1328
BmeT110I	CYCGRG	1 cut(s)	1345
BmgT120I	GGNCC	1 cut(s)	1328
BmiI	GGNNCC	7 cut(s)	49, 217, 912, 967, 1228, 1329, 1459
BmrFI	CCNGG	6 cut(s)	318, 734, 849, 1020, 1283, 1450
BmsI	GCATC	4 cut(s)	364, 492, 1030, 1211
BpiI	GAAGAC	2 cut(s)	905, 1598
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	3 cut(s)	339, 755, 1041
Bpu1102I	GCTNAGC	1 cut(s)	378
BpuMI	CCSGG	1 cut(s)	849
BsaHI	GRCGYC	5 cut(s)	48, 180, 186, 216, 250
BsaI	GGTCTC	1 cut(s)	151
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	3 cut(s)	1019, 1067, 1237
Bse118I	RCCGGY	1 cut(s)	212
Bse1I	ACTGG	3 cut(s)	616, 1196, 1331
Bse21I	CCTNAGG	2 cut(s)	696, 1480
BseBI	CCWGG	5 cut(s)	318, 734, 1020, 1283, 1450
BseGI	GGATG	7 cut(s)	29, 250, 415, 507, 709, 1045, 1202
BseLI	CCNNNNNNNGG	3 cut(s)	1019, 1067, 1237
BseMII	CTCAG	3 cut(s)	392, 468, 1494
BseNI	ACTGG	3 cut(s)	616, 1196, 1331
BseRI	GAGGAG	4 cut(s)	91, 125, 128, 133
BseSI	GKGCMC	1 cut(s)	1231
BseXI	GCAGC	5 cut(s)	294, 502, 937, 1095, 1410
BseYI	CCCAGC	2 cut(s)	43, 343
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	486, 1088, 1126
BshNI	GGYRCC	4 cut(s)	47, 215, 965, 1226
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	1345
BsiSI	CCGG	3 cut(s)	213, 848, 1547
BslFI	GGGAC	3 cut(s)	360, 864, 1341
BslI	CCNNNNNNNGG	3 cut(s)	1019, 1067, 1237
BsmAI	GTCTC	4 cut(s)	151, 267, 1310, 1339
BsmFI	GGGAC	3 cut(s)	360, 864, 1341
BsmI	GAATGC	2 cut(s)	164, 1043
BsnI	GGCC	3 cut(s)	486, 1088, 1126
Bso31I	GGTCTC	1 cut(s)	151
BsoBI	CYCGRG	1 cut(s)	1345
Bsp1286I	GDGCHC	2 cut(s)	1027, 1231
Bsp143I	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
Bsp1720I	GCTNAGC	1 cut(s)	378
BspACI	CCGC	9 cut(s)	5, 219, 382, 505, 627, 1002, 1071, 1111, 1189
BspANI	GGCC	3 cut(s)	486, 1088, 1126
BspCNI	CTCAG	3 cut(s)	391, 467, 1493
BspLI	GGNNCC	7 cut(s)	49, 217, 912, 967, 1228, 1329, 1459
BspMAI	CTGCAG	1 cut(s)	955
BspPI	GGATC	6 cut(s)	15, 35, 159, 686, 724, 1139
BspQI	GCTCTTC	1 cut(s)	128
BspT107I	GGYRCC	4 cut(s)	47, 215, 965, 1226
BspTI	CTTAAG	1 cut(s)	1570
BspTNI	GGTCTC	1 cut(s)	151
BsrBI	CCGCTC	2 cut(s)	221, 1004
BsrFI	RCCGGY	1 cut(s)	212
BsrI	ACTGG	3 cut(s)	616, 1196, 1331
BssAI	RCCGGY	1 cut(s)	212
BssMI	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
BssNI	GRCGYC	5 cut(s)	48, 180, 186, 216, 250
Bst2UI	CCWGG	5 cut(s)	318, 734, 1020, 1283, 1450
Bst4CI	ACNGT	7 cut(s)	40, 553, 904, 1084, 1158, 1543, 1597
Bst6I	CTCTTC	3 cut(s)	128, 528, 612
BstACI	GRCGYC	5 cut(s)	48, 180, 186, 216, 250
BstAFI	CTTAAG	1 cut(s)	1570
BstC8I	GCNNGC	7 cut(s)	72, 214, 305, 995, 999, 1193, 1288
BstDEI	CTNAG	6 cut(s)	378, 454, 696, 1121, 1301, 1480
BstENI	CCTNNNNNAGG	2 cut(s)	1065, 1235
BstF5I	GGATG	7 cut(s)	29, 250, 415, 507, 709, 1045, 1202
BstH2I	RGCGCY	4 cut(s)	51, 71, 219, 1565
BstHHI	GCGC	6 cut(s)	50, 70, 218, 1056, 1281, 1564
BstKTI	GATC	7 cut(s)	10, 30, 167, 694, 732, 1147, 1261
BstMAI	GTCTC	4 cut(s)	151, 267, 1310, 1339
BstMBI	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
BstMWI	GCNNNNNNNGC	5 cut(s)	135, 209, 218, 224, 1287
BstNI	CCWGG	5 cut(s)	318, 734, 1020, 1283, 1450
BstNSI	RCATGY	6 cut(s)	263, 758, 773, 997, 1054, 1290
BstSCI	CCNGG	6 cut(s)	316, 732, 847, 1018, 1281, 1448
BstSFI	CTRYAG	2 cut(s)	645, 951
BstSLI	GKGCMC	1 cut(s)	1231
BstV1I	GCAGC	5 cut(s)	294, 502, 937, 1095, 1410
BstV2I	GAAGAC	2 cut(s)	905, 1598
BstX2I	RGATCY	2 cut(s)	27, 164
BstXI	CCANNNNNNTGG	1 cut(s)	43
BstYI	RGATCY	2 cut(s)	27, 164
Bsu36I	CCTNAGG	2 cut(s)	696, 1480
BsuRI	GGCC	3 cut(s)	486, 1088, 1126
BtsCI	GGATG	7 cut(s)	29, 250, 415, 507, 709, 1045, 1202
BtsI	GCAGTG	2 cut(s)	960, 1404
BtsIMutI	CAGTG	5 cut(s)	168, 960, 1154, 1203, 1404
Cac8I	GCNNGC	7 cut(s)	72, 214, 305, 995, 999, 1193, 1288
CaiI	CAGNNNCTG	1 cut(s)	287
CfoI	GCGC	6 cut(s)	50, 70, 218, 1056, 1281, 1564
Cfr10I	RCCGGY	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	1328
CseI	GACGC	1 cut(s)	665
Csp6I	GTAC	3 cut(s)	13, 845, 966
CviAII	CATG	6 cut(s)	260, 755, 770, 994, 1051, 1287
CviQI	GTAC	3 cut(s)	13, 845, 966
DdeI	CTNAG	6 cut(s)	378, 454, 696, 1121, 1301, 1480
DinI	GGCGCC	2 cut(s)	49, 217
DpnI	GATC	7 cut(s)	9, 29, 166, 693, 731, 1146, 1260
DpnII	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
DrdI	GACNNNNNNGTC	2 cut(s)	179, 185
DseDI	GACNNNNNNGTC	2 cut(s)	179, 185
EaeI	YGGCCR	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	128, 528, 612
EarI	CTCTTC	3 cut(s)	128, 528, 612
EciI	GGCGGA	2 cut(s)	20, 1086
Ecl136II	GAGCTC	1 cut(s)	1025
Eco147I	AGGCCT	1 cut(s)	1126
Eco24I	GRGCYC	1 cut(s)	1027
Eco31I	GGTCTC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	1328
Eco47III	AGCGCT	1 cut(s)	69
Eco53kI	GAGCTC	1 cut(s)	1025
Eco81I	CCTNAGG	2 cut(s)	696, 1480
Eco88I	CYCGRG	1 cut(s)	1345
EcoICRI	GAGCTC	1 cut(s)	1025
EcoNI	CCTNNNNNAGG	2 cut(s)	1065, 1235
EcoRII	CCWGG	5 cut(s)	316, 732, 1018, 1281, 1448
EcoT22I	ATGCAT	1 cut(s)	1045
EcoT38I	GRGCYC	1 cut(s)	1027
EgeI	GGCGCC	2 cut(s)	49, 217
EheI	GGCGCC	2 cut(s)	49, 217
FaeI	CATG	6 cut(s)	263, 758, 773, 997, 1054, 1290
FaqI	GGGAC	3 cut(s)	360, 864, 1341
FatI	CATG	6 cut(s)	259, 754, 769, 993, 1050, 1286
FauI	CCCGC	2 cut(s)	375, 498
FauNDI	CATATG	1 cut(s)	631
FbaI	TGATCA	1 cut(s)	1258
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	7 cut(s)	219, 308, 516, 951, 1002, 1109, 1424
FokI	GGATG	7 cut(s)	36, 257, 422, 514, 716, 1052, 1189
FriOI	GRGCYC	1 cut(s)	1027
Fsp4HI	GCNGC	7 cut(s)	219, 308, 516, 951, 1002, 1109, 1424
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	6 cut(s)	49, 69, 217, 1055, 1280, 1563
GluI	GCNGC	7 cut(s)	219, 308, 516, 951, 1002, 1109, 1424
GsaI	CCCAGC	2 cut(s)	47, 347
GsuI	CTGGAG	3 cut(s)	339, 755, 1041
HaeII	RGCGCY	4 cut(s)	51, 71, 219, 1565
HaeIII	GGCC	3 cut(s)	486, 1088, 1126
HapII	CCGG	3 cut(s)	213, 848, 1547
HgaI	GACGC	1 cut(s)	665
HhaI	GCGC	6 cut(s)	50, 70, 218, 1056, 1281, 1564
Hin1I	GRCGYC	5 cut(s)	48, 180, 186, 216, 250
Hin1II	CATG	6 cut(s)	263, 758, 773, 997, 1054, 1290
Hin6I	GCGC	6 cut(s)	48, 68, 216, 1054, 1279, 1562
HinP1I	GCGC	6 cut(s)	48, 68, 216, 1054, 1279, 1562
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	5 cut(s)	919, 938, 1114, 1172, 1485
HpaII	CCGG	3 cut(s)	213, 848, 1547
HphI	GGTGA	3 cut(s)	890, 1245, 1428
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	5 cut(s)	23, 200, 457, 1096, 1310
Hpy188III	TCNNGA	3 cut(s)	465, 1169, 1482
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	6 cut(s)	182, 185, 188, 200, 255, 681
HpyAV	CCTTC	9 cut(s)	462, 505, 720, 798, 952, 1186, 1264, 1374, 1505
HpyCH4III	ACNGT	7 cut(s)	40, 553, 904, 1084, 1158, 1543, 1597
HpyCH4IV	ACGT	4 cut(s)	180, 186, 250, 1444
HpyF10VI	GCNNNNNNNGC	5 cut(s)	135, 209, 218, 224, 1287
HpyF3I	CTNAG	6 cut(s)	378, 454, 696, 1121, 1301, 1480
HpySE526I	ACGT	4 cut(s)	180, 186, 250, 1444
Hsp92I	GRCGYC	5 cut(s)	48, 180, 186, 216, 250
Hsp92II	CATG	6 cut(s)	263, 758, 773, 997, 1054, 1290
HspAI	GCGC	6 cut(s)	48, 68, 216, 1054, 1279, 1562
KasI	GGCGCC	2 cut(s)	47, 215
KpnI	GGTACC	1 cut(s)	969
KroI	GCCGGC	1 cut(s)	212
KroNI	GCCGGC	1 cut(s)	214
Ksp22I	TGATCA	1 cut(s)	1258
Kzo9I	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	9 cut(s)	120, 200, 364, 471, 541, 916, 1009, 1022, 1457
Lsp1109I	GCAGC	5 cut(s)	294, 502, 937, 1095, 1410
LweI	GCATC	4 cut(s)	364, 492, 1030, 1211
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	4 cut(s)	180, 186, 250, 1444
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	7 cut(s)	9, 29, 166, 693, 731, 1146, 1260
MbiI	CCGCTC	2 cut(s)	221, 1004
MboI	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
MflI	RGATCY	2 cut(s)	27, 164
MhlI	GDGCHC	2 cut(s)	1027, 1231
Mly113I	GGCGCC	2 cut(s)	48, 216
MmeI	TCCRAC	3 cut(s)	174, 178, 693
Mph1103I	ATGCAT	1 cut(s)	1045
MroNI	GCCGGC	1 cut(s)	212
MseI	TTAA	4 cut(s)	335, 585, 1466, 1571
MslI	CAYNNNNRTG	2 cut(s)	456, 768
MspA1I	CMGCKG	1 cut(s)	382
MspCI	CTTAAG	1 cut(s)	1570
MspI	CCGG	3 cut(s)	213, 848, 1547
MspR9I	CCNGG	6 cut(s)	318, 734, 849, 1020, 1283, 1450
Mva1269I	GAATGC	2 cut(s)	164, 1043
MvaI	CCWGG	5 cut(s)	318, 734, 1020, 1283, 1450
MwoI	GCNNNNNNNGC	5 cut(s)	135, 209, 218, 224, 1287
NaeI	GCCGGC	1 cut(s)	214
NarI	GGCGCC	2 cut(s)	48, 216
NciI	CCSGG	1 cut(s)	849
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
NgoMIV	GCCGGC	1 cut(s)	212
NlaIII	CATG	6 cut(s)	263, 758, 773, 997, 1054, 1290
NlaIV	GGNNCC	7 cut(s)	49, 217, 912, 967, 1228, 1329, 1459
NmeAIII	GCCGAG	1 cut(s)	216
NsiI	ATGCAT	1 cut(s)	1045
NspI	RCATGY	6 cut(s)	263, 758, 773, 997, 1054, 1290
PaeI	GCATGC	2 cut(s)	997, 1290
PceI	AGGCCT	1 cut(s)	1126
PciI	ACATGT	1 cut(s)	769
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 192
PctI	GAATGC	2 cut(s)	164, 1043
PdiI	GCCGGC	1 cut(s)	214
PfeI	GAWTC	5 cut(s)	919, 938, 1114, 1172, 1485
PfoI	TCCNGGA	2 cut(s)	732, 1018
PkrI	GCNGC	7 cut(s)	220, 309, 517, 952, 1003, 1110, 1425
PluTI	GGCGCC	2 cut(s)	51, 219
PscI	ACATGT	1 cut(s)	769
PshBI	ATTAAT	2 cut(s)	335, 1466
Psp124BI	GAGCTC	1 cut(s)	1027
Psp6I	CCWGG	5 cut(s)	316, 732, 1018, 1281, 1448
PspFI	CCCAGC	2 cut(s)	43, 343
PspGI	CCWGG	5 cut(s)	316, 732, 1018, 1281, 1448
PspN4I	GGNNCC	7 cut(s)	49, 217, 912, 967, 1228, 1329, 1459
PspPI	GGNCC	1 cut(s)	1328
PstI	CTGCAG	1 cut(s)	955
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	27, 164
RsaI	GTAC	3 cut(s)	14, 846, 967
RsaNI	GTAC	3 cut(s)	13, 845, 966
RseI	CAYNNNNRTG	2 cut(s)	456, 768
SacI	GAGCTC	1 cut(s)	1027
SalI	GTCGAC	1 cut(s)	182
SapI	GCTCTTC	1 cut(s)	128
SaqAI	TTAA	4 cut(s)	335, 585, 1466, 1571
SatI	GCNGC	7 cut(s)	219, 308, 516, 951, 1002, 1109, 1424
Sau3AI	GATC	7 cut(s)	7, 27, 164, 691, 729, 1144, 1258
Sau96I	GGNCC	1 cut(s)	1328
ScaI	AGTACT	1 cut(s)	14
ScrFI	CCNGG	6 cut(s)	318, 734, 849, 1020, 1283, 1450
SduI	GDGCHC	2 cut(s)	1027, 1231
SfaNI	GCATC	4 cut(s)	364, 492, 1030, 1211
SfcI	CTRYAG	2 cut(s)	645, 951
SfoI	GGCGCC	2 cut(s)	49, 217
SgrDI	CGTCGACG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	1328
SmiMI	CAYNNNNRTG	2 cut(s)	456, 768
SmlI	CTYRAG	1 cut(s)	1570
SmoI	CTYRAG	1 cut(s)	1570
SphI	GCATGC	2 cut(s)	997, 1290
SseBI	AGGCCT	1 cut(s)	1126
SsiI	CCGC	9 cut(s)	5, 219, 382, 505, 627, 1002, 1071, 1111, 1189
SspDI	GGCGCC	2 cut(s)	47, 215
SspMI	CTAG	1 cut(s)	350
SstI	GAGCTC	1 cut(s)	1027
StuI	AGGCCT	1 cut(s)	1126
StyD4I	CCNGG	6 cut(s)	316, 732, 847, 1018, 1281, 1448
TaaI	ACNGT	7 cut(s)	40, 553, 904, 1084, 1158, 1543, 1597
TaiI	ACGT	4 cut(s)	183, 189, 253, 1447
TaqI	TCGA	4 cut(s)	183, 535, 1367, 1472
TaqII	GACCGA	1 cut(s)	306
TatI	WGTACW	1 cut(s)	12
TauI	GCSGC	2 cut(s)	221, 1004
TfiI	GAWTC	5 cut(s)	919, 938, 1114, 1172, 1485
Tru1I	TTAA	4 cut(s)	335, 585, 1466, 1571
Tru9I	TTAA	4 cut(s)	335, 585, 1466, 1571
TscAI	CASTG	5 cut(s)	175, 960, 1161, 1203, 1404
TseI	GCWGC	5 cut(s)	307, 515, 950, 1108, 1423
TspDTI	ATGAA	3 cut(s)	481, 934, 1601
TspGWI	ACGGA	3 cut(s)	168, 780, 836
TspRI	CASTG	5 cut(s)	175, 960, 1161, 1203, 1404
Vha464I	CTTAAG	1 cut(s)	1570
VpaK11BI	GGWCC	1 cut(s)	1328
VspI	ATTAAT	2 cut(s)	335, 1466
XagI	CCTNNNNNAGG	2 cut(s)	1065, 1235
XapI	RAATTY	2 cut(s)	446, 930
XceI	RCATGY	6 cut(s)	263, 758, 773, 997, 1054, 1290
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	1 cut(s)	350
ZraI	GACGTC	3 cut(s)	181, 187, 251
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	1045

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.