Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0010638

Physical Location & Seq

Genomic Coordinates Forward (+)

66847951 .. 66849621

Gene Structure 1671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG491900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGCGAGAGAAAGCGGCAACTCTTCCCAATGTGCAATTGGAGCAAGGAACAGTTACTTCTCTGCTTGAAGAAAAGGGAACAATTAAGGGTGTGCAATACAAGACTAAAACAGGTCAAGAGATGACAGCATATGCACCTCTTACTATTGTTTGTGATGGTTGTTTCTCTAACTTGCGACGCTCTCTTTGCGATCCTAAGGTGGATGTGCCTTCTTGTTTTGTTGGGTTGGTTCTGGAGAACTGTGATCTTCCACATGCAAATCATGGGCATGTTATCTTAGCAGACCCTTCCCCTATTTTGTTCTATCAGATCAGTAGTACGGAGGTTCGTTGTCTGGTTGATGTACCTGGACAAAAGGTTCCTTCCATTTCAAATGGTGAAATGGCCAAGTATTTGAAGACTGTGGTGGCTTCTCAGATTCCCCCTCAAATTTATGATGCCTTCATAGCTGCAGTTGATAAAGGTAACATCAGGACAATGCCTAACAGAAGCATGCCTGCCGCTCCCTATCCTACTCCTGGAGCCTTATTGATGGGGGATGCATTCAATATGCGCCACCCGCTAACTGGGGGAGGAATGACTGTGGCATTGTCTGATATTGTTGTGCTCCGGGATCTTCTCAGGCCTTTGCGCGCCCTAAATGATGCACCTACTCTGTCCAAATATCTTGAATCTTTTTACACTCTGCGGAAGAGTGCCTCGGGAATCATTTACCCCATAATTAAGGCAGAAGGGGTTAGACAAATGTTTTTTCCTGCAACAGTTCCAGCGTATTACAGAACGCCCGTCTCAAGTGAAAAGATGACAAAGAAAGCTGATGGCAGAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0010035 GO:0012505 GO:0016125 GO:0016126 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

276

Amino Acids

30.12

Weight (kDa)

8.95

Isoelectric Point (pI)

48.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_3	PF01494	1 - 204	2.1e-10	FAD binding domain
SE	PF08491	45 - 238	4.2e-85	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010638)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58440
fragaria_vesca	FvH4_2g32500 FvH4_2g32500 FvH4_2g32500
malus_domestica	MD08G1076800.v1.1 MD15G1064100.v1.1
prunus_persica	Prupe.1G418100_v2.0.a1 Prupe.1G418100_v2.0.a1
pyrus_communis	pycom08g06360 pycom15g06080
rosa_chinensis	RchiOBHm_Chr6g0310151
rosa_laevigata	RLG00000010504
rosa_multiflora	Rmu_sc0008163.1_g000004
rosa_roxburghii	Rroxscaffold_7G00158810
rosa_rugosa	Rorug06G0377700 Rorug06G0377800
rosa_samantha	Rh6AG491900 Rh6BG501500 Rh6CG506600
rosa_wichuraiana	Rw6G042800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	503
AccII	CGCG	1 cut(s)	633
AciI	CCGC	4 cut(s)	14, 501, 560, 688
AclWI	GGATC	2 cut(s)	185, 621
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	429
AfaI	GTAC	2 cut(s)	319, 345
AfiI	CCNNNNNNNGG	2 cut(s)	518, 566
AgsI	TTSAA	5 cut(s)	68, 372, 397, 547, 671
AjnI	CCWGG	2 cut(s)	346, 517
AloI	GAACNNNNNNTCC	2 cut(s)	342, 374
AluBI	AGCT	2 cut(s)	449, 815
AluI	AGCT	2 cut(s)	449, 815
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	793
AlwI	GGATC	2 cut(s)	185, 621
Ama87I	CYCGRG	1 cut(s)	700
AoxI	GGCC	2 cut(s)	384, 623
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	168, 200
AspLEI	GCGC	3 cut(s)	555, 633, 635
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	700
AxyI	CCTNAGG	1 cut(s)	195
BalI	TGGCCA	1 cut(s)	386
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	609
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	149, 526, 812
BciT130I	CCWGG	2 cut(s)	348, 519
BcnI	CCSGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	793
BfmI	CTRYAG	1 cut(s)	450
BisI	GCNGC	3 cut(s)	15, 450, 501
BlsI	GCNGC	3 cut(s)	16, 451, 502
Bme1390I	CCNGG	3 cut(s)	348, 519, 611
BmeT110I	CYCGRG	1 cut(s)	700
BmiI	GGNNCC	2 cut(s)	360, 523
BmrFI	CCNGG	3 cut(s)	348, 519, 611
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	427, 529, 634
BmuI	ACTGGG	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	2 cut(s)	254, 540
BpuEI	CTTGAG	1 cut(s)	775
BpuMI	CCSGG	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	699
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 566
Bse1I	ACTGG	1 cut(s)	571
Bse21I	CCTNAGG	1 cut(s)	195
BseBI	CCWGG	2 cut(s)	348, 519
BseDI	CCNNGG	1 cut(s)	699
BseGI	GGATG	2 cut(s)	208, 544
BseLI	CCNNNNNNNGG	2 cut(s)	518, 566
BseMII	CTCAG	2 cut(s)	428, 634
BseNI	ACTGG	1 cut(s)	571
BsePI	GCGCGC	1 cut(s)	631
BseXI	GCAGC	1 cut(s)	436
Bsh1236I	CGCG	1 cut(s)	633
BshFI	GGCC	2 cut(s)	386, 625
BsiHKAI	GWGCWC	1 cut(s)	609
BsiHKCI	CYCGRG	1 cut(s)	700
BsiSI	CCGG	1 cut(s)	610
BslI	CCNNNNNNNGG	2 cut(s)	518, 566
BsmAI	GTCTC	1 cut(s)	793
BsmBI	CGTCTC	1 cut(s)	793
BsmI	GAATGC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	386, 625
BsoBI	CYCGRG	1 cut(s)	700
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp143I	GATC	4 cut(s)	190, 244, 309, 613
BspACI	CCGC	4 cut(s)	14, 501, 560, 688
BspANI	GGCC	2 cut(s)	386, 625
BspCNI	CTCAG	2 cut(s)	427, 633
BspFNI	CGCG	1 cut(s)	633
BspLI	GGNNCC	2 cut(s)	360, 523
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	2 cut(s)	185, 621
BsrBI	CCGCTC	1 cut(s)	503
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	699
BssHII	GCGCGC	1 cut(s)	631
BssMI	GATC	4 cut(s)	190, 244, 309, 613
Bst2UI	CCWGG	2 cut(s)	348, 519
Bst4CI	ACNGT	5 cut(s)	52, 242, 403, 583, 763
Bst6I	CTCTTC	2 cut(s)	27, 686
BstC8I	GCNNGC	3 cut(s)	494, 498, 633
BstDEI	CTNAG	4 cut(s)	195, 277, 414, 620
BstF5I	GGATG	2 cut(s)	208, 544
BstFNI	CGCG	1 cut(s)	633
BstHHI	GCGC	3 cut(s)	555, 633, 635
BstKTI	GATC	4 cut(s)	193, 247, 312, 616
BstMAI	GTCTC	1 cut(s)	793
BstMBI	GATC	4 cut(s)	190, 244, 309, 613
BstMWI	GCNNNNNNNGC	4 cut(s)	40, 186, 446, 559
BstNI	CCWGG	2 cut(s)	348, 519
BstNSI	RCATGY	3 cut(s)	257, 272, 496
BstSCI	CCNGG	3 cut(s)	346, 517, 609
BstSFI	CTRYAG	1 cut(s)	450
BstUI	CGCG	1 cut(s)	633
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	404
BstX2I	RGATCY	1 cut(s)	613
BstYI	RGATCY	1 cut(s)	613
Bsu36I	CCTNAGG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	386, 625
BtsCI	GGATG	2 cut(s)	208, 544
Cac8I	GCNNGC	3 cut(s)	494, 498, 633
CfoI	GCGC	3 cut(s)	555, 633, 635
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	2 cut(s)	318, 344
CviAII	CATG	4 cut(s)	254, 263, 269, 493
CviJI	RGCY	6 cut(s)	386, 410, 449, 524, 625, 815
CviKI_1	RGCY	6 cut(s)	386, 410, 449, 524, 625, 815
CviQI	GTAC	2 cut(s)	318, 344
DdeI	CTNAG	4 cut(s)	195, 277, 414, 620
DpnI	GATC	4 cut(s)	192, 246, 311, 615
DpnII	GATC	4 cut(s)	190, 244, 309, 613
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	27, 686
EarI	CTCTTC	2 cut(s)	27, 686
Eco147I	AGGCCT	1 cut(s)	625
Eco81I	CCTNAGG	1 cut(s)	195
Eco88I	CYCGRG	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	346, 517
EcoT22I	ATGCAT	1 cut(s)	544
Esp3I	CGTCTC	1 cut(s)	793
FaeI	CATG	4 cut(s)	257, 266, 272, 496
FatI	CATG	4 cut(s)	253, 262, 268, 492
FauI	CCCGC	1 cut(s)	567
FauNDI	CATATG	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	15, 450, 501
FokI	GGATG	2 cut(s)	215, 551
Fsp4HI	GCNGC	3 cut(s)	15, 450, 501
GlaI	GCGC	3 cut(s)	554, 632, 634
GluI	GCNGC	3 cut(s)	15, 450, 501
GsuI	CTGGAG	2 cut(s)	254, 540
HaeIII	GGCC	2 cut(s)	386, 625
HapII	CCGG	1 cut(s)	610
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	3 cut(s)	555, 633, 635
Hin1II	CATG	4 cut(s)	257, 266, 272, 496
Hin6I	GCGC	3 cut(s)	553, 631, 633
HinP1I	GCGC	3 cut(s)	553, 631, 633
HinfI	GANTC	3 cut(s)	418, 671, 705
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	309, 417, 595
Hpy188III	TCNNGA	5 cut(s)	116, 233, 472, 668, 702
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	5 cut(s)	219, 297, 372, 451, 725
HpyCH4III	ACNGT	5 cut(s)	52, 242, 403, 583, 763
HpyCH4V	TGCA	8 cut(s)	34, 94, 134, 257, 452, 542, 647, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	40, 186, 446, 559
HpyF3I	CTNAG	4 cut(s)	195, 277, 414, 620
Hsp92II	CATG	4 cut(s)	257, 266, 272, 496
HspAI	GCGC	3 cut(s)	553, 631, 633
Kzo9I	GATC	4 cut(s)	190, 244, 309, 613
LmnI	GCTCC	4 cut(s)	40, 508, 521, 612
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	3 cut(s)	427, 529, 634
MaeIII	GTNAC	2 cut(s)	52, 464
MalI	GATC	4 cut(s)	192, 246, 311, 615
MbiI	CCGCTC	1 cut(s)	503
MboI	GATC	4 cut(s)	190, 244, 309, 613
MboII	GAAGA	6 cut(s)	14, 80, 239, 409, 608, 703
MfeI	CAATTG	1 cut(s)	35
MflI	RGATCY	1 cut(s)	613
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	386
MluCI	AATT	5 cut(s)	35, 81, 429, 720, 826
MluNI	TGGCCA	1 cut(s)	386
MnlI	CCTC	5 cut(s)	147, 316, 435, 566, 709
Mox20I	TGGCCA	1 cut(s)	386
Mph1103I	ATGCAT	1 cut(s)	544
MscI	TGGCCA	1 cut(s)	386
MseI	TTAA	2 cut(s)	84, 723
MslI	CAYNNNNRTG	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	386
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	3 cut(s)	348, 519, 611
MunI	CAATTG	1 cut(s)	35
Mva1269I	GAATGC	1 cut(s)	542
MvaI	CCWGG	2 cut(s)	348, 519
MvnI	CGCG	1 cut(s)	633
MwoI	GCNNNNNNNGC	4 cut(s)	40, 186, 446, 559
NciI	CCSGG	1 cut(s)	611
NdeI	CATATG	1 cut(s)	130
NdeII	GATC	4 cut(s)	190, 244, 309, 613
NlaIII	CATG	4 cut(s)	257, 266, 272, 496
NlaIV	GGNNCC	2 cut(s)	360, 523
NsiI	ATGCAT	1 cut(s)	544
NspI	RCATGY	3 cut(s)	257, 272, 496
PaeI	GCATGC	1 cut(s)	496
PauI	GCGCGC	1 cut(s)	631
PceI	AGGCCT	1 cut(s)	625
PctI	GAATGC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	418, 671, 705
PfoI	TCCNGGA	2 cut(s)	517, 609
PkrI	GCNGC	3 cut(s)	16, 451, 502
Psp6I	CCWGG	2 cut(s)	346, 517
PspGI	CCWGG	2 cut(s)	346, 517
PspN4I	GGNNCC	2 cut(s)	360, 523
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	613
PteI	GCGCGC	1 cut(s)	631
RsaI	GTAC	2 cut(s)	319, 345
RsaNI	GTAC	2 cut(s)	318, 344
RseI	CAYNNNNRTG	1 cut(s)	267
SaqAI	TTAA	2 cut(s)	84, 723
SatI	GCNGC	3 cut(s)	15, 450, 501
Sau3AI	GATC	4 cut(s)	190, 244, 309, 613
ScrFI	CCNGG	3 cut(s)	348, 519, 611
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	427, 529, 634
SfcI	CTRYAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	790
SmoI	CTYRAG	1 cut(s)	790
SphI	GCATGC	1 cut(s)	496
Sse9I	AATT	5 cut(s)	35, 81, 429, 720, 826
SseBI	AGGCCT	1 cut(s)	625
SsiI	CCGC	4 cut(s)	14, 501, 560, 688
StuI	AGGCCT	1 cut(s)	625
StyD4I	CCNGG	3 cut(s)	346, 517, 609
TaaI	ACNGT	5 cut(s)	52, 242, 403, 583, 763
TasI	AATT	5 cut(s)	35, 81, 429, 720, 826
TauI	GCSGC	2 cut(s)	17, 503
TfiI	GAWTC	3 cut(s)	418, 671, 705
Tru1I	TTAA	2 cut(s)	84, 723
Tru9I	TTAA	2 cut(s)	84, 723
TseI	GCWGC	1 cut(s)	449
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	1 cut(s)	335
XapI	RAATTY	1 cut(s)	429
XceI	RCATGY	3 cut(s)	257, 272, 496
XcmI	CCANNNNNNNNNTGG	2 cut(s)	34, 563
Zsp2I	ATGCAT	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.