pycom08g10620

Exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012363
Physical Location & Seq
Forward (+)
8865479 .. 8865925
447 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g10620.1

Sequence Viewer

Length: 447 bp
ATGTCGTCACCATCTTCTCTAGGAGAACAAGCTTGCATTGCGCCATCACCATTACCTGTTCTGGTAATTCAGAAGCTGCAAGCTATAATTGTAAGACTGATTGCTAATAATAGACTAGAGAGATGTAAATCTATTTATGTTGAAGTTCGAAGTTCGAATGTAAGGGCAAGTTTACAAGCTCTCAATTTGGATTACCTTGAGATATCAATTGCAGAGTTTAATGATGTGCAGAGCATAGAGGGATACATATCGAAGTGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCAGAGTATAAGTTGTGTAATGATGTTTTTGAGAGGATTGGATTGGATGTGTGGATGGGTTGCTTTGCAAAGATAGCTGCTCAGGCTGGTATTCTTGCATTCCTACAATTTGGGAAGACTGTTACAGAGAGCAAAAAAGATCGATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

149

Amino Acids

16.55

Weight (kDa)

7.65

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 84 - 145 3.7e-11 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31540
fragaria_vesca FvH4_2g36720 FvH4_2g36720
malus_domestica MD08G1127600.v1.1 MD15G1106900.v1.1
prunus_persica Prupe.1G459300_v2.0.a1
pyrus_communis pycom08g10620 pycom08g10630 pycom15g09770
rosa_chinensis RchiOBHm_Chr6g0305081
rosa_laevigata RLG00000010920
rosa_multiflora Rmu_sc0000061.1_g000027
rosa_roxburghii Rroxscaffold_7G00163160
rosa_rugosa Rorug06G0337200
rosa_samantha Rh6AG449000 Rh6BG452100 Rh6CG462700 Rh6DG449400
rosa_wichuraiana Rw6G039110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 435
AgsI TTSAA 1 cut(s) 143
AluBI AGCT 5 cut(s) 32, 76, 83, 179, 374
AluI AGCT 5 cut(s) 32, 76, 83, 179, 374
AlwI GGATC 1 cut(s) 435
AlwNI CAGNNNCTG 1 cut(s) 76
ApeKI GCWGC 2 cut(s) 76, 374
AspLEI GCGC 1 cut(s) 43
AsuHPI GGTGA 1 cut(s) 39
AsuII TTCGAA 2 cut(s) 148, 155
BbsI GAAGAC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 63, 361
BccI CCATC 3 cut(s) 19, 52, 346
BciVI GTATCC 1 cut(s) 236
BfaI CTAG 2 cut(s) 20, 116
BfuI GTATCC 1 cut(s) 236
BisI GCNGC 2 cut(s) 77, 375
BlsI GCNGC 2 cut(s) 78, 376
BpiI GAAGAC 1 cut(s) 419
Bpu10I CCTNAGC 1 cut(s) 378
Bpu14I TTCGAA 2 cut(s) 148, 155
BpuEI CTTGAG 1 cut(s) 218
Bsa29I ATCGAT 1 cut(s) 439
BsaBI GATNNNNATC 2 cut(s) 127, 247
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 2 cut(s) 127, 247
BseCI ATCGAT 1 cut(s) 439
BseGI GGATG 2 cut(s) 349, 357
BseJI GATNNNNATC 2 cut(s) 127, 247
BseMI GCAATG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 392
BseXI GCAGC 2 cut(s) 63, 361
BsgI GTGCAG 1 cut(s) 248
BshVI ATCGAT 1 cut(s) 439
BsmI GAATGC 1 cut(s) 395
Bsp119I TTCGAA 2 cut(s) 148, 155
Bsp143I GATC 2 cut(s) 436, 440
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 439
BspPI GGATC 1 cut(s) 435
BspT104I TTCGAA 2 cut(s) 148, 155
BsrDI GCAATG 1 cut(s) 36
BssMI GATC 2 cut(s) 436, 440
Bst4CI ACNGT 1 cut(s) 418
BstBI TTCGAA 2 cut(s) 148, 155
BstC8I GCNNGC 2 cut(s) 34, 81
BstDEI CTNAG 1 cut(s) 378
BstF5I GGATG 2 cut(s) 349, 357
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 439, 443
BstMBI GATC 2 cut(s) 436, 440
BstMWI GCNNNNNNNGC 3 cut(s) 38, 371, 380
BstV1I GCAGC 2 cut(s) 63, 361
BstV2I GAAGAC 1 cut(s) 419
Bsu15I ATCGAT 1 cut(s) 439
BsuI GTATCC 1 cut(s) 236
BsuTUI ATCGAT 1 cut(s) 439
BtsCI GGATG 2 cut(s) 349, 357
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
Cac8I GCNNGC 2 cut(s) 34, 81
CaiI CAGNNNCTG 1 cut(s) 76
CfoI GCGC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 439
CviJI RGCY 6 cut(s) 32, 76, 83, 179, 374, 383
CviKI_1 RGCY 6 cut(s) 32, 76, 83, 179, 374, 383
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 438, 442
DpnII GATC 2 cut(s) 436, 440
Eco32I GATATC 1 cut(s) 204
EcoRV GATATC 1 cut(s) 204
FaiI YATR 5 cut(s) 86, 138, 236, 248, 306
Fnu4HI GCNGC 2 cut(s) 77, 375
FokI GGATG 2 cut(s) 356, 364
Fsp4HI GCNGC 2 cut(s) 77, 375
FspBI CTAG 2 cut(s) 20, 116
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 77, 375
HhaI GCGC 1 cut(s) 43
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 30
HphI GGTGA 1 cut(s) 39
Hpy166II GTNNAC 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 72
Hpy188III TCNNGA 1 cut(s) 444
Hpy8I GTNNAC 1 cut(s) 173
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 7 cut(s) 36, 79, 212, 229, 278, 365, 395
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 371, 380
HpyF3I CTNAG 1 cut(s) 378
HspAI GCGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 436, 440
LpnPI CCDG 4 cut(s) 47, 69, 365, 369
Lsp1109I GCAGC 2 cut(s) 63, 361
MaeI CTAG 2 cut(s) 20, 116
MaeIII GTNAC 2 cut(s) 6, 418
MalI GATC 2 cut(s) 438, 442
MboI GATC 2 cut(s) 436, 440
MboII GAAGA 2 cut(s) 6, 424
MfeI CAATTG 1 cut(s) 207
MluCI AATT 5 cut(s) 66, 87, 184, 207, 404
MnlI CCTC 3 cut(s) 232, 289, 324
MseI TTAA 1 cut(s) 219
MunI CAATTG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 395
MwoI GCNNNNNNNGC 3 cut(s) 38, 371, 380
NdeII GATC 2 cut(s) 436, 440
NmuCI GTSAC 1 cut(s) 6
NspV TTCGAA 2 cut(s) 148, 155
PctI GAATGC 1 cut(s) 395
PkrI GCNGC 2 cut(s) 78, 376
PstNI CAGNNNCTG 1 cut(s) 76
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 77, 375
Sau3AI GATC 2 cut(s) 436, 440
SetI ASST 7 cut(s) 34, 58, 78, 85, 181, 198, 376
SfuI TTCGAA 2 cut(s) 148, 155
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 5 cut(s) 66, 87, 184, 207, 404
SspMI CTAG 2 cut(s) 20, 116
TaaI ACNGT 1 cut(s) 418
TaqI TCGA 4 cut(s) 148, 155, 251, 439
TasI AATT 5 cut(s) 66, 87, 184, 207, 404
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TscAI CASTG 1 cut(s) 285
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 2 cut(s) 76, 374
Tsp45I GTSAC 1 cut(s) 6
TspRI CASTG 1 cut(s) 285
XspI CTAG 2 cut(s) 20, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.