Rorug06G0337200

Exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012363
Physical Location & Seq
Reverse (-)
48926639 .. 48929783
3145 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0337200.1

Sequence Viewer

Length: 1035 bp
ATGGCTGGTAGTAATGAAGTCAACCTCAATGAATCCAAGAGGGTTGTTCCACTCAATACATGGGTACTCATCTCCAATTTCAAGCTGGCGTACAATCTCCTCCGCCGCTCCGACGGAACATTCAACCGTGAGCTGGCGGAGTACCTTGACCGCAAAGTCCCTGCAAACACATTCCCAGTTGATGGTGTCGTCTCCTTTGATCATGTCGACAGAAGCACTGGCCTCCTCAACCGGATTTACCAAATGGCCCCCGCAAACCATGCTCAATGGGGCATTGTGAATCTTGAGAAACCCTTGAGCACCACTGAAATTGTGCCTGTCATAATATTCTTCCATGGTGGGAGCTTCACTCACTCCTCGGCCAACAGTGCTATCTATGACACTTTCTGCCGCCGCCTTGTTAACACCTGCAAGGCTGCTGTGGTGTCTGTAGACTACCGCCGATCACCTGAACATCGGTATCCCTGTGCTTATGATGACGGCTGGGCAGCTCTCAAGTGGGTTAAGTCGAGAACATGGCTTCAGAGTGGGAAGGACTCTAAGGTTTATGTGTACTTGGCTGGAGATAGTTCTGGTGGCAACATTGCACACCATGTTGCTGTGAGGGCAGCTGAAGCTGAAGTTGAGGTTTTGGGGAACATCCTTCTTCATCCAATGTTTGGCGGGCAAATGAGGACTGAATCCGAGGTTAAACTAGATGGGAAGTACTTTGTAACGATTCAAGACCGCGATTGGTACTGGCGAGCCTTTTTGCCTGAAGGAGAAGATAGAGACCACCCGGCATGTAATCCATTTGGCCCCAGAGATAAGGGGATTGAAGGGCTCAAGTTCCCCAAAAGTCTTGTTGTTGTGGCTGGTTTGGACCTTATGCAAGATTGGCAATTGGCTTATGTTGAAGGGCTCAAGAATTCGGGGCAGGAGGTAAAGCTCATTTTCCTGAAGGAGGCGACAATTGGGTTCTACTTCCTGCCTAACAATAAGCATTTCTATTGTTTAATGGAGGAGATAAGCAACTTCGTCAATCCTGACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

344

Amino Acids

38.89

Weight (kDa)

6.37

Isoelectric Point (pI)

39.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BD-FAE PF20434 97 - 209 2.5e-12 BD-FAE
Abhydrolase_3 PF07859 108 - 321 2.4e-62 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31540
fragaria_vesca FvH4_2g36720 FvH4_2g36720
malus_domestica MD08G1127600.v1.1 MD15G1106900.v1.1
prunus_persica Prupe.1G459300_v2.0.a1
pyrus_communis pycom08g10620 pycom08g10630 pycom15g09770
rosa_chinensis RchiOBHm_Chr6g0305081
rosa_laevigata RLG00000010920
rosa_multiflora Rmu_sc0000061.1_g000027
rosa_roxburghii Rroxscaffold_7G00163160
rosa_rugosa Rorug06G0337200
rosa_samantha Rh6AG449000 Rh6BG452100 Rh6CG462700 Rh6DG449400
rosa_wichuraiana Rw6G039110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 416
AasI GACNNNNNNGTC 1 cut(s) 155
Acc36I ACCTGC 1 cut(s) 416
AccB7I CCANNNNNTGG 2 cut(s) 182, 659
AccBSI CCGCTC 1 cut(s) 108
AccI GTMKAC 2 cut(s) 207, 432
AccII CGCG 1 cut(s) 729
AcoI YGGCCR 1 cut(s) 360
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 5 cut(s) 506, 633, 639, 777, 959
AfaI GTAC 6 cut(s) 66, 92, 143, 554, 707, 737
AfiI CCNNNNNNNGG 4 cut(s) 133, 182, 659, 943
AgsI TTSAA 5 cut(s) 82, 124, 722, 818, 896
AluBI AGCT 7 cut(s) 85, 133, 345, 491, 611, 617, 928
AluI AGCT 7 cut(s) 85, 133, 345, 491, 611, 617, 928
Alw21I GWGCWC 1 cut(s) 302
Alw26I GTCTC 2 cut(s) 196, 765
AoxI GGCC 4 cut(s) 220, 246, 360, 796
ApeKI GCWGC 3 cut(s) 416, 488, 608
ApoI RAATTY 1 cut(s) 907
AspS9I GGNCC 3 cut(s) 247, 797, 862
AsuC2I CCSGG 1 cut(s) 779
AsuHPI GGTGA 1 cut(s) 438
AvaII GGWCC 1 cut(s) 862
BaeI ACNNNNGTAYC 2 cut(s) 443, 476
BanII GRGCYC 2 cut(s) 825, 903
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 3 cut(s) 403, 500, 620
BccI CCATC 2 cut(s) 176, 692
BceAI ACGGC 1 cut(s) 496
BciVI GTATCC 1 cut(s) 471
BclI TGATCA 1 cut(s) 199
BcnI CCSGG 1 cut(s) 779
BcoDI GTCTC 2 cut(s) 196, 765
BfaI CTAG 1 cut(s) 695
BfmI CTRYAG 1 cut(s) 429
BfuAI ACCTGC 1 cut(s) 416
BfuI GTATCC 1 cut(s) 471
BisI GCNGC 6 cut(s) 106, 391, 394, 417, 489, 609
BlsI GCNGC 6 cut(s) 107, 392, 395, 418, 490, 610
BmcAI AGTACT 1 cut(s) 707
Bme1390I CCNGG 1 cut(s) 779
Bme18I GGWCC 1 cut(s) 862
BmgT120I GGNCC 3 cut(s) 247, 797, 862
BmiI GGNNCC 2 cut(s) 249, 799
BmrFI CCNGG 1 cut(s) 779
BmrI ACTGGG 1 cut(s) 170
BmuI ACTGGG 1 cut(s) 170
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpmI CTGGAG 1 cut(s) 582
BpuEI CTTGAG 5 cut(s) 305, 316, 479, 809, 887
BpuMI CCSGG 1 cut(s) 779
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 3 cut(s) 334, 357, 684
BsaWI WCCGGW 1 cut(s) 231
Bsc4I CCNNNNNNNGG 4 cut(s) 133, 182, 659, 943
Bse1I ACTGG 3 cut(s) 176, 223, 743
Bse3DI GCAATG 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 334, 357, 684
BseGI GGATG 2 cut(s) 639, 649
BseLI CCNNNNNNNGG 4 cut(s) 133, 182, 659, 943
BseMI GCAATG 1 cut(s) 582
BseNI ACTGG 3 cut(s) 176, 223, 743
BseRI GAGGAG 4 cut(s) 89, 215, 346, 1016
BseXI GCAGC 3 cut(s) 403, 500, 620
BseYI CCCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 729
BshFI GGCC 4 cut(s) 222, 248, 362, 798
BsiHKAI GWGCWC 1 cut(s) 302
BsiSI CCGG 2 cut(s) 232, 779
BslFI GGGAC 1 cut(s) 143
BslI CCNNNNNNNGG 4 cut(s) 133, 182, 659, 943
BsmAI GTCTC 2 cut(s) 196, 765
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 143
BsnI GGCC 4 cut(s) 222, 248, 362, 798
Bso31I GGTCTC 1 cut(s) 765
Bsp1286I GDGCHC 3 cut(s) 302, 825, 903
Bsp143I GATC 2 cut(s) 199, 443
Bsp19I CCATGG 1 cut(s) 334
BspANI GGCC 4 cut(s) 222, 248, 362, 798
BspFNI CGCG 1 cut(s) 729
BspLI GGNNCC 2 cut(s) 249, 799
BspMI ACCTGC 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 765
BsrBI CCGCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 582
BsrI ACTGG 3 cut(s) 176, 223, 743
BssECI CCNNGG 3 cut(s) 334, 357, 684
BssMI GATC 2 cut(s) 199, 443
BssT1I CCWWGG 1 cut(s) 334
Bst4CI ACNGT 3 cut(s) 128, 368, 1031
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 4 cut(s) 87, 135, 665, 744
BstDEI CTNAG 1 cut(s) 540
BstDSI CCRYGG 1 cut(s) 334
BstENI CCTNNNNNAGG 1 cut(s) 941
BstF5I GGATG 2 cut(s) 639, 649
BstFNI CGCG 1 cut(s) 729
BstKTI GATC 2 cut(s) 202, 446
BstMAI GTCTC 2 cut(s) 196, 765
BstMBI GATC 2 cut(s) 199, 443
BstMWI GCNNNNNNNGC 5 cut(s) 260, 368, 605, 614, 877
BstNSI RCATGY 1 cut(s) 786
BstSCI CCNGG 1 cut(s) 777
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 3 cut(s) 403, 500, 620
BsuI GTATCC 1 cut(s) 471
BsuRI GGCC 4 cut(s) 222, 248, 362, 798
BtgI CCRYGG 1 cut(s) 334
BtsCI GGATG 2 cut(s) 639, 649
BtsIMutI CAGTG 3 cut(s) 216, 303, 373
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 4 cut(s) 87, 135, 665, 744
Cfr13I GGNCC 3 cut(s) 247, 797, 862
Csp6I GTAC 6 cut(s) 65, 91, 142, 553, 706, 736
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 7 cut(s) 60, 203, 260, 335, 516, 593, 783
CviQI GTAC 6 cut(s) 65, 91, 142, 553, 706, 736
DdeI CTNAG 1 cut(s) 540
DpnI GATC 2 cut(s) 201, 445
DpnII GATC 2 cut(s) 199, 443
DrdI GACNNNNNNGTC 1 cut(s) 155
DseDI GACNNNNNNGTC 1 cut(s) 155
EaeI YGGCCR 1 cut(s) 360
EciI GGCGGA 2 cut(s) 92, 152
Eco130I CCWWGG 1 cut(s) 334
Eco24I GRGCYC 2 cut(s) 825, 903
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 862
Eco57I CTGAAG 5 cut(s) 506, 633, 639, 777, 959
EcoNI CCTNNNNNAGG 1 cut(s) 941
EcoRI GAATTC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 334
EcoT38I GRGCYC 2 cut(s) 825, 903
ErhI CCWWGG 1 cut(s) 334
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
FaqI GGGAC 1 cut(s) 143
FatI CATG 7 cut(s) 59, 202, 259, 334, 515, 592, 782
FauI CCCGC 2 cut(s) 259, 656
FbaI TGATCA 1 cut(s) 199
FblI GTMKAC 2 cut(s) 207, 432
Fnu4HI GCNGC 6 cut(s) 106, 391, 394, 417, 489, 609
FokI GGATG 2 cut(s) 626, 636
FriOI GRGCYC 2 cut(s) 825, 903
Fsp4HI GCNGC 6 cut(s) 106, 391, 394, 417, 489, 609
FspBI CTAG 1 cut(s) 695
GluI GCNGC 6 cut(s) 106, 391, 394, 417, 489, 609
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 4 cut(s) 222, 248, 362, 798
HapII CCGG 2 cut(s) 232, 779
Hin1II CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
HincII GTYRAC 3 cut(s) 22, 208, 403
HindII GTYRAC 3 cut(s) 22, 208, 403
HinfI GANTC 5 cut(s) 32, 280, 536, 680, 718
HpaI GTTAAC 1 cut(s) 403
HpaII CCGG 2 cut(s) 232, 779
HphI GGTGA 1 cut(s) 438
Hpy166II GTNNAC 5 cut(s) 22, 208, 403, 433, 553
Hpy188I TCNGA 3 cut(s) 112, 525, 685
Hpy188III TCNNGA 6 cut(s) 284, 510, 722, 904, 937, 1025
Hpy8I GTNNAC 5 cut(s) 22, 208, 403, 433, 553
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 6 cut(s) 526, 653, 752, 812, 890, 934
HpyCH4III ACNGT 3 cut(s) 128, 368, 1031
HpyCH4V TGCA 4 cut(s) 164, 411, 587, 871
HpyF10VI GCNNNNNNNGC 5 cut(s) 260, 368, 605, 614, 877
HpyF3I CTNAG 1 cut(s) 540
Hsp92II CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
Ksp22I TGATCA 1 cut(s) 199
KspAI GTTAAC 1 cut(s) 403
Kzo9I GATC 2 cut(s) 199, 443
LmnI GCTCC 2 cut(s) 113, 342
Lsp1109I GCAGC 3 cut(s) 403, 500, 620
MaeI CTAG 1 cut(s) 695
MaeIII GTNAC 1 cut(s) 712
MalI GATC 2 cut(s) 201, 445
MbiI CCGCTC 1 cut(s) 108
MboI GATC 2 cut(s) 199, 443
MboII GAAGA 3 cut(s) 322, 638, 776
MfeI CAATTG 2 cut(s) 881, 951
MhlI GDGCHC 3 cut(s) 302, 825, 903
MluCI AATT 5 cut(s) 76, 309, 881, 907, 951
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 135
MseI TTAA 5 cut(s) 402, 504, 690, 995, 1033
MspA1I CMGCKG 1 cut(s) 611
MspI CCGG 2 cut(s) 232, 779
MspR9I CCNGG 1 cut(s) 779
MunI CAATTG 2 cut(s) 881, 951
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 5 cut(s) 260, 368, 605, 614, 877
NciI CCSGG 1 cut(s) 779
NcoI CCATGG 1 cut(s) 334
NdeII GATC 2 cut(s) 199, 443
NlaIII CATG 7 cut(s) 63, 206, 263, 338, 519, 596, 786
NlaIV GGNNCC 2 cut(s) 249, 799
NmeAIII GCCGAG 1 cut(s) 338
NspI RCATGY 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 416
PfeI GAWTC 4 cut(s) 32, 280, 680, 718
PflMI CCANNNNNTGG 2 cut(s) 182, 659
PkrI GCNGC 6 cut(s) 107, 392, 395, 418, 490, 610
PleI GAGTC 1 cut(s) 530
PpsI GAGTC 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 483
PspN4I GGNNCC 2 cut(s) 249, 799
PspPI GGNCC 3 cut(s) 247, 797, 862
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 6 cut(s) 66, 92, 143, 554, 707, 737
RsaNI GTAC 6 cut(s) 65, 91, 142, 553, 706, 736
SalI GTCGAC 1 cut(s) 206
SaqAI TTAA 5 cut(s) 402, 504, 690, 995, 1033
SatI GCNGC 6 cut(s) 106, 391, 394, 417, 489, 609
Sau3AI GATC 2 cut(s) 199, 443
Sau96I GGNCC 3 cut(s) 247, 797, 862
ScaI AGTACT 1 cut(s) 707
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 1 cut(s) 779
SduI GDGCHC 3 cut(s) 302, 825, 903
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 1 cut(s) 862
SmlI CTYRAG 5 cut(s) 284, 295, 494, 824, 902
SmoI CTYRAG 5 cut(s) 284, 295, 494, 824, 902
Sse9I AATT 5 cut(s) 76, 309, 881, 907, 951
SspI AATATT 1 cut(s) 327
SspMI CTAG 1 cut(s) 695
StyD4I CCNGG 1 cut(s) 777
StyI CCWWGG 1 cut(s) 334
TaaI ACNGT 3 cut(s) 128, 368, 1031
TaqI TCGA 2 cut(s) 207, 509
TasI AATT 5 cut(s) 76, 309, 881, 907, 951
TatI WGTACW 2 cut(s) 552, 705
TauI GCSGC 3 cut(s) 108, 393, 396
TfiI GAWTC 4 cut(s) 32, 280, 680, 718
Tru1I TTAA 5 cut(s) 402, 504, 690, 995, 1033
Tru9I TTAA 5 cut(s) 402, 504, 690, 995, 1033
TscAI CASTG 3 cut(s) 223, 310, 373
TseI GCWGC 3 cut(s) 416, 488, 608
TspDTI ATGAA 3 cut(s) 30, 45, 638
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 3 cut(s) 223, 310, 373
Van91I CCANNNNNTGG 2 cut(s) 182, 659
VpaK11BI GGWCC 1 cut(s) 862
XagI CCTNNNNNAGG 1 cut(s) 941
XapI RAATTY 1 cut(s) 907
XceI RCATGY 1 cut(s) 786
XcmI CCANNNNNNNNNTGG 2 cut(s) 57, 82
XmiI GTMKAC 2 cut(s) 207, 432
XspI CTAG 1 cut(s) 695
ZrmI AGTACT 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.