pycom08g10630

Exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0012363
Physical Location & Seq
Forward (+)
8866378 .. 8866602
225 bp
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UTR
Exon/CDS
Intron
pycom08g10630.1

Sequence Viewer

Length: 225 bp
ATGAACAACCATTGGCATTTGTACAAGCACCTGAAGGGAACTAAGCTGGGGTTTCTGCTGGGGGATGCTTGGCTACGAGAACATGAACAGTACAAGGATTATTATTCCACAGTTTTCTTGAGAGAGAGCTGGGGGAAACTTCCGGGTCATCTAAGTCGAGAAGGTCTGATTCTGTTCTCAGGTGGTCGTGCCACTGCCCGTGATCGATTGTCAAGAAGAGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

75

Amino Acids

8.73

Weight (kDa)

10.08

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 1 - 68 6.9e-15 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31540
fragaria_vesca FvH4_2g36720 FvH4_2g36720
malus_domestica MD08G1127600.v1.1 MD15G1106900.v1.1
prunus_persica Prupe.1G459300_v2.0.a1
pyrus_communis pycom08g10620 pycom08g10630 pycom15g09770
rosa_chinensis RchiOBHm_Chr6g0305081
rosa_laevigata RLG00000010920
rosa_multiflora Rmu_sc0000061.1_g000027
rosa_roxburghii Rroxscaffold_7G00163160
rosa_rugosa Rorug06G0337200
rosa_samantha Rh6AG449000 Rh6BG452100 Rh6CG462700 Rh6DG449400
rosa_wichuraiana Rw6G039110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 2 cut(s) 23, 92
AluBI AGCT 2 cut(s) 46, 129
AluI AGCT 2 cut(s) 46, 129
AsuC2I CCSGG 1 cut(s) 144
BcnI CCSGG 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 55
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 1 cut(s) 144
Bsa29I ATCGAT 1 cut(s) 205
BseCI ATCGAT 1 cut(s) 205
BseGI GGATG 1 cut(s) 70
BseMII CTCAG 1 cut(s) 192
BseYI CCCAGC 3 cut(s) 46, 58, 129
BshVI ATCGAT 1 cut(s) 205
BsiSI CCGG 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 1 cut(s) 202
BspCNI CTCAG 1 cut(s) 191
BspDI ATCGAT 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 21
BssMI GATC 1 cut(s) 202
Bst4CI ACNGT 2 cut(s) 90, 112
Bst6I CTCTTC 1 cut(s) 211
BstAUI TGTACA 1 cut(s) 21
BstDEI CTNAG 3 cut(s) 42, 152, 178
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstSCI CCNGG 1 cut(s) 142
Bsu15I ATCGAT 1 cut(s) 205
BsuTUI ATCGAT 1 cut(s) 205
BtsCI GGATG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 192
BtsIMutI CAGTG 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 205
Csp6I GTAC 2 cut(s) 22, 91
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 46, 73, 129, 222
CviKI_1 RGCY 4 cut(s) 46, 73, 129, 222
CviQI GTAC 2 cut(s) 22, 91
DdeI CTNAG 3 cut(s) 42, 152, 178
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 53
FaeI CATG 1 cut(s) 86
FaiI YATR 1 cut(s) 84
FatI CATG 1 cut(s) 82
FokI GGATG 1 cut(s) 77
GsaI CCCAGC 3 cut(s) 50, 62, 133
HapII CCGG 1 cut(s) 143
Hin1II CATG 1 cut(s) 86
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 3 cut(s) 118, 158, 213
HpyAV CCTTC 2 cut(s) 28, 155
HpyCH4III ACNGT 2 cut(s) 90, 112
HpyF3I CTNAG 3 cut(s) 42, 152, 178
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 32, 44, 44, 115, 156, 165
LweI GCATC 1 cut(s) 55
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MnlI CCTC 1 cut(s) 212
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 144
NciI CCSGG 1 cut(s) 144
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 86
PfeI GAWTC 1 cut(s) 169
PspFI CCCAGC 3 cut(s) 46, 58, 129
RsaI GTAC 2 cut(s) 23, 92
RsaNI GTAC 2 cut(s) 22, 91
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 144
SetI ASST 5 cut(s) 33, 48, 131, 166, 184
SfaNI GCATC 1 cut(s) 55
SmlI CTYRAG 1 cut(s) 118
SmoI CTYRAG 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 90, 112
TaqI TCGA 2 cut(s) 157, 205
TatI WGTACW 2 cut(s) 21, 90
TfiI GAWTC 1 cut(s) 169
TscAI CASTG 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 17, 99
TspRI CASTG 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.