Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0014333

Physical Location & Seq

Genomic Coordinates Forward (+)

13121469 .. 13122771

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGAGGAAAGAAAAAATCAATGAAAAAGATGAAGAGGATGAAGATATCGAATCACAAAAATTGGAGGCAGATGAAGAAAATATGACAAATGAGTTTCTTCAAATGCTTGAGGAGGAAGAGATCCTAAACGAATACAAATTGAATCAAAGTGATATTCCACCTTTTGCCCTTGAAGGGGCAGAGAAATCTAGTGAGGGGTATTTGGCGTCCATGAATCCTTTAGATACTTTGGTAGCAAGGAAAGACACTCCAAAACTTGCCATGCAGATATCAAAGCCGTTTGTTCTGCCATGGAATCAGTCCATGAGTGGATTTGAATTGTTTCAAAGGATTGCAGGCATTGGACTTGATGAGCTAAACACCCAGATTATGATTCTGATGGCATTGGATGAATTGATGGATAAAACTGCGGAGCAGATAGCTTTTAAAGGCATTGCGTCTGCAATCATTCAAGGAAGGAACAAGGAAGGCGCTAGCTCGAGCGCTGGAAGAACAATTGTTGCTGTTAAAACCATGTCAAATACATTGAGCACATGCAGGAAAGAAAGGATTTCGACCTGGATTTGGAATGTGAACGAGAACCCCTTGACACTAGAGGAGATTCTAGCCTTTTCCATGGAGAAAATCGAGGCCATGGCGCTCGAAGCTTTGAAAATTCAAGCTGAAATGGCTGAGGAAGAAGCCCCATTTGAAGTTTCACCAACGAACAATAGTTTCACAAATTCAAGTGGTGCAAAAGTACTTCAAAACCACCCTCTCGCTTCTTCAATATCGCTCGAGGATTGGATCAAAAACCACAGCCTGGCAAGCGATATGAGGCGATTGGAGGCCCTAGCGGTTATTTACGCAACGAGAGCTGATGACGCCGTCAATGAGGAGGAGAAGAGATTCAAAGTGACAAGTATACATGTGGGAGGATTGAAGGTGATGACAAAAGGAGGAAAGAGGAATGCGTGGGACAGTGAGAGGCAAAGGCTAACTGCAATGCAGTGGCTAATTTCTTATGGATTGGCGAAAGCTGTTGCGAGGAAGAAGGGCAAACATCATGTGGCATCCAAAGGTCAGGATTTGTTGTGGAGCATTTCATCAAGAGTGATGGTTGATATGTGGCTCAAGTATATGAGAAATCCAGATGTAAAATTTACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006928 GO:0006950 GO:0006970 GO:0006996 GO:0007097 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009787 GO:0009902 GO:0009903 GO:0009966 GO:0009987 GO:0010029 GO:0010646 GO:0016020 GO:0016043 GO:0019750 GO:0023051 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048580 GO:0048583 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0099515 GO:1900140 GO:1901419 GO:1902265 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

384

Amino Acids

43.2

Weight (kDa)

5.24

Isoelectric Point (pI)

39.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMI1_PMIR1-2_C	PF21745	85 - 233	8.6e-56	PMI1/PMIR1-2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42550
fragaria_vesca	FvH4_2g26870
malus_domestica	MD08G1162900.v1.1
prunus_persica	Prupe.1G498000_v2.0.a1
pyrus_communis	pycom08g14070 pycom15g31260
rosa_chinensis	RchiOBHm_Chr6g0295721
rosa_laevigata	RLG00000011772
rosa_multiflora	Rmu_sc0007372.1_g000001 Rmu_sc0007986.1_g000004
rosa_roxburghii	Rroxscaffold_7G00172180
rosa_rugosa	Rorug06G0253800
rosa_samantha	Rh6AG367200 Rh6BG375000 Rh6CG381300 Rh6DG368100
rosa_wichuraiana	Rw6G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	802
AccI	GTMKAC	1 cut(s)	904
AciI	CCGC	2 cut(s)	410, 836
AclWI	GGATC	2 cut(s)	115, 794
AcsI	RAATTY	3 cut(s)	654, 721, 1139
AcyI	GRCGYC	2 cut(s)	206, 864
AfaI	GTAC	1 cut(s)	741
AfeI	AGCGCT	1 cut(s)	484
AfiI	CCNNNNNNNGG	4 cut(s)	174, 175, 564, 802
AflIII	ACRYGT	1 cut(s)	907
AjnI	CCWGG	2 cut(s)	557, 801
AluBI	AGCT	7 cut(s)	355, 422, 477, 647, 662, 857, 1019
AluI	AGCT	7 cut(s)	355, 422, 477, 647, 662, 857, 1019
Alw21I	GWGCWC	1 cut(s)	533
AlwI	GGATC	2 cut(s)	115, 794
Ama87I	CYCGRG	2 cut(s)	478, 776
Aor51HI	AGCGCT	1 cut(s)	484
AoxI	GGCC	2 cut(s)	630, 828
ApoI	RAATTY	3 cut(s)	654, 721, 1139
Asp700I	GAANNNNTTC	2 cut(s)	321, 887
AspLEI	GCGC	3 cut(s)	473, 485, 640
AspS9I	GGNCC	1 cut(s)	829
AsuHPI	GGTGA	2 cut(s)	690, 937
AsuNHI	GCTAGC	1 cut(s)	473
AvaI	CYCGRG	2 cut(s)	478, 776
BaeI	ACNNNNGTAYC	2 cut(s)	216, 249
Bbv12I	GWGCWC	1 cut(s)	533
BbvCI	CCTCAGC	1 cut(s)	672
BccI	CCATC	3 cut(s)	373, 391, 1090
BceAI	ACGGC	2 cut(s)	262, 851
BciT130I	CCWGG	2 cut(s)	559, 803
BfaI	CTAG	5 cut(s)	189, 474, 593, 605, 833
BfoI	RGCGCY	3 cut(s)	474, 486, 641
BmcAI	AGTACT	1 cut(s)	741
Bme1390I	CCNGG	2 cut(s)	559, 803
BmeT110I	CYCGRG	2 cut(s)	478, 776
BmgT120I	GGNCC	1 cut(s)	829
BmrFI	CCNGG	2 cut(s)	559, 803
BmsI	GCATC	1 cut(s)	1061
BmtI	GCTAGC	1 cut(s)	477
Bpu10I	CCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	2 cut(s)	128, 1097
BsaHI	GRCGYC	2 cut(s)	206, 864
BsaJI	CCNNGG	3 cut(s)	290, 615, 633
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 175, 564, 802
Bse3DI	GCAATG	2 cut(s)	432, 990
BseBI	CCWGG	2 cut(s)	559, 803
BseDI	CCNNGG	3 cut(s)	290, 615, 633
BseGI	GGATG	3 cut(s)	43, 394, 1052
BseLI	CCNNNNNNNGG	4 cut(s)	174, 175, 564, 802
BseMI	GCAATG	2 cut(s)	432, 990
BseMII	CTCAG	1 cut(s)	663
BseRI	GAGGAG	4 cut(s)	125, 611, 890, 893
BshFI	GGCC	2 cut(s)	632, 830
BsiHKAI	GWGCWC	1 cut(s)	533
BsiHKCI	CYCGRG	2 cut(s)	478, 776
BslFI	GGGAC	1 cut(s)	971
BslI	CCNNNNNNNGG	4 cut(s)	174, 175, 564, 802
BsmFI	GGGAC	1 cut(s)	971
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	2 cut(s)	632, 830
BsoBI	CYCGRG	2 cut(s)	478, 776
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	120, 786
Bsp19I	CCATGG	3 cut(s)	290, 615, 633
BspACI	CCGC	2 cut(s)	410, 836
BspANI	GGCC	2 cut(s)	632, 830
BspCNI	CTCAG	1 cut(s)	664
BspOI	GCTAGC	1 cut(s)	477
BspPI	GGATC	2 cut(s)	115, 794
BsrDI	GCAATG	2 cut(s)	432, 990
BssECI	CCNNGG	3 cut(s)	290, 615, 633
BssMI	GATC	2 cut(s)	120, 786
BssNAI	GTATAC	1 cut(s)	905
BssNI	GRCGYC	2 cut(s)	206, 864
BssT1I	CCWWGG	3 cut(s)	290, 615, 633
Bst1107I	GTATAC	1 cut(s)	905
Bst2UI	CCWGG	2 cut(s)	559, 803
Bst4CI	ACNGT	1 cut(s)	962
Bst6I	CTCTTC	3 cut(s)	27, 111, 878
BstACI	GRCGYC	2 cut(s)	206, 864
BstC8I	GCNNGC	3 cut(s)	337, 475, 808
BstDEI	CTNAG	1 cut(s)	672
BstDSI	CCRYGG	3 cut(s)	290, 615, 633
BstF5I	GGATG	3 cut(s)	43, 394, 1052
BstH2I	RGCGCY	3 cut(s)	474, 486, 641
BstHHI	GCGC	3 cut(s)	473, 485, 640
BstKTI	GATC	2 cut(s)	123, 789
BstMBI	GATC	2 cut(s)	120, 786
BstMWI	GCNNNNNNNGC	5 cut(s)	644, 668, 807, 854, 863
BstNI	CCWGG	2 cut(s)	559, 803
BstNSI	RCATGY	2 cut(s)	537, 911
BstSCI	CCNGG	2 cut(s)	557, 801
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BstZ17I	GTATAC	1 cut(s)	905
BsuRI	GGCC	2 cut(s)	632, 830
BtgI	CCRYGG	3 cut(s)	290, 615, 633
BtsCI	GGATG	3 cut(s)	43, 394, 1052
BtsI	GCAGTG	1 cut(s)	995
BtsIMutI	CAGTG	2 cut(s)	967, 995
Cac8I	GCNNGC	3 cut(s)	337, 475, 808
CfoI	GCGC	3 cut(s)	473, 485, 640
Cfr13I	GGNCC	1 cut(s)	829
CseI	GACGC	3 cut(s)	195, 426, 872
Csp6I	GTAC	1 cut(s)	740
CviQI	GTAC	1 cut(s)	740
DdeI	CTNAG	1 cut(s)	672
DpnI	GATC	2 cut(s)	122, 788
DpnII	GATC	2 cut(s)	120, 786
DraI	TTTAAA	1 cut(s)	427
Eam1104I	CTCTTC	3 cut(s)	27, 111, 878
EarI	CTCTTC	3 cut(s)	27, 111, 878
Eco130I	CCWWGG	3 cut(s)	290, 615, 633
Eco32I	GATATC	2 cut(s)	46, 270
Eco47III	AGCGCT	1 cut(s)	484
Eco88I	CYCGRG	2 cut(s)	478, 776
EcoO109I	RGGNCCY	1 cut(s)	829
EcoRII	CCWGG	2 cut(s)	557, 801
EcoRV	GATATC	2 cut(s)	46, 270
EcoT14I	CCWWGG	3 cut(s)	290, 615, 633
ErhI	CCWWGG	3 cut(s)	290, 615, 633
FaqI	GGGAC	1 cut(s)	971
FblI	GTMKAC	1 cut(s)	904
FokI	GGATG	3 cut(s)	50, 401, 1039
FspBI	CTAG	5 cut(s)	189, 474, 593, 605, 833
GlaI	GCGC	3 cut(s)	472, 484, 639
HaeII	RGCGCY	3 cut(s)	474, 486, 641
HaeIII	GGCC	2 cut(s)	632, 830
HgaI	GACGC	3 cut(s)	195, 426, 872
HhaI	GCGC	3 cut(s)	473, 485, 640
Hin1I	GRCGYC	2 cut(s)	206, 864
Hin6I	GCGC	3 cut(s)	471, 483, 638
HinP1I	GCGC	3 cut(s)	471, 483, 638
HindIII	AAGCTT	1 cut(s)	645
HinfI	GANTC	7 cut(s)	50, 142, 214, 295, 373, 601, 888
HphI	GGTGA	2 cut(s)	690, 937
Hpy166II	GTNNAC	2 cut(s)	574, 905
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	3 cut(s)	1064, 1089, 1130
Hpy8I	GTNNAC	2 cut(s)	574, 905
HpyAV	CCTTC	5 cut(s)	167, 450, 461, 916, 1027
HpyCH4III	ACNGT	1 cut(s)	962
HpyCH4V	TGCA	7 cut(s)	265, 335, 443, 537, 734, 983, 988
HpyF10VI	GCNNNNNNNGC	5 cut(s)	644, 668, 807, 854, 863
HpyF3I	CTNAG	1 cut(s)	672
Hsp92I	GRCGYC	2 cut(s)	206, 864
HspAI	GCGC	3 cut(s)	471, 483, 638
Kzo9I	GATC	2 cut(s)	120, 786
LmnI	GCTCC	2 cut(s)	412, 1077
LweI	GCATC	1 cut(s)	1061
MaeI	CTAG	5 cut(s)	189, 474, 593, 605, 833
MaeIII	GTNAC	1 cut(s)	895
MalI	GATC	2 cut(s)	122, 788
MboI	GATC	2 cut(s)	120, 786
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	533
MluCI	AATT	9 cut(s)	59, 137, 317, 392, 495, 654, 721, 996, 1139
MroXI	GAANNNNTTC	2 cut(s)	321, 887
MseI	TTAA	2 cut(s)	426, 507
MspR9I	CCNGG	2 cut(s)	559, 803
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	1 cut(s)	955
MvaI	CCWGG	2 cut(s)	559, 803
MwoI	GCNNNNNNNGC	5 cut(s)	644, 668, 807, 854, 863
NcoI	CCATGG	3 cut(s)	290, 615, 633
NdeII	GATC	2 cut(s)	120, 786
NheI	GCTAGC	1 cut(s)	473
NmuCI	GTSAC	1 cut(s)	895
NspI	RCATGY	2 cut(s)	537, 911
PaeR7I	CTCGAG	2 cut(s)	478, 776
PciI	ACATGT	1 cut(s)	907
PctI	GAATGC	1 cut(s)	955
PdmI	GAANNNNTTC	2 cut(s)	321, 887
PfeI	GAWTC	7 cut(s)	50, 142, 214, 295, 373, 601, 888
PflFI	GACNNNGTC	1 cut(s)	866
PflMI	CCANNNNNTGG	1 cut(s)	802
PscI	ACATGT	1 cut(s)	907
Psp6I	CCWGG	2 cut(s)	557, 801
PspGI	CCWGG	2 cut(s)	557, 801
PspPI	GGNCC	1 cut(s)	829
PspXI	VCTCGAGB	2 cut(s)	478, 776
PsuI	RGATCY	1 cut(s)	120
PsyI	GACNNNGTC	1 cut(s)	866
RsaI	GTAC	1 cut(s)	741
RsaNI	GTAC	1 cut(s)	740
SaqAI	TTAA	2 cut(s)	426, 507
Sau3AI	GATC	2 cut(s)	120, 786
Sau96I	GGNCC	1 cut(s)	829
ScaI	AGTACT	1 cut(s)	741
ScrFI	CCNGG	2 cut(s)	559, 803
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	1061
Sfr274I	CTCGAG	2 cut(s)	478, 776
SlaI	CTCGAG	2 cut(s)	478, 776
SmlI	CTYRAG	4 cut(s)	107, 478, 776, 1112
SmoI	CTYRAG	4 cut(s)	107, 478, 776, 1112
Sse9I	AATT	9 cut(s)	59, 137, 317, 392, 495, 654, 721, 996, 1139
SsiI	CCGC	2 cut(s)	410, 836
SspMI	CTAG	5 cut(s)	189, 474, 593, 605, 833
StyD4I	CCNGG	2 cut(s)	557, 801
StyI	CCWWGG	3 cut(s)	290, 615, 633
TaaI	ACNGT	1 cut(s)	962
TaqI	TCGA	6 cut(s)	48, 479, 554, 627, 642, 777
TasI	AATT	9 cut(s)	59, 137, 317, 392, 495, 654, 721, 996, 1139
TatI	WGTACW	1 cut(s)	739
TfiI	GAWTC	7 cut(s)	50, 142, 214, 295, 373, 601, 888
Tru1I	TTAA	2 cut(s)	426, 507
Tru9I	TTAA	2 cut(s)	426, 507
TscAI	CASTG	2 cut(s)	967, 995
TseFI	GTSAC	1 cut(s)	895
Tsp45I	GTSAC	1 cut(s)	895
TspDTI	ATGAA	7 cut(s)	36, 45, 54, 87, 227, 405, 1074
TspRI	CASTG	2 cut(s)	967, 995
Tth111I	GACNNNGTC	1 cut(s)	866
Van91I	CCANNNNNTGG	1 cut(s)	802
XapI	RAATTY	3 cut(s)	654, 721, 1139
XceI	RCATGY	2 cut(s)	537, 911
XhoI	CTCGAG	2 cut(s)	478, 776
XmiI	GTMKAC	1 cut(s)	904
XmnI	GAANNNNTTC	2 cut(s)	321, 887
XspI	CTAG	5 cut(s)	189, 474, 593, 605, 833
ZrmI	AGTACT	1 cut(s)	741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.