Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014333

Physical Location & Seq

Genomic Coordinates Reverse (-)

40036194 .. 40037176

Gene Structure 983 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0253800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTCGATGGCAGCCACCGGCTGCTTGATGTTGTTAACCCTAACCATTACCCTAACTGCAAGCCTCATTTTTCCGTTGGTCTACGGAGCAGACATCGAATCAGACAAACAAGCTCTGGCTGCGTTGAAGAAGAGCTTAGTGGATCCATGGAACGTTCTCTCTGACTGGGATGTCGCCGTTAACCCATGCACTTGGAACTTCATTGAGTGCGAGAACAATAGGGTCACCTCAGTGAGCATAGGCATGAATAACGTCGGAGGAAATCTGGTACCGGAACTTGGAGGTCTTTCGGCTCTAGTAGATCTGAGTATTTTCAACAATATGATCGAAGGAACCATTCCGGCGGAGCTTGGTAACCTGCAGAACCTGGAGGTCTTGAGTTTGTCAGAGAACCTATTATCAGGCGAGATTCCTCCTTCACTGGGGAACTTGAGATCACTGGTTTTTGTAAATCTCGATCAAAACGAATTCACTGGGAAAGTCTCCTCCCAAATTGGAAGCCTTCCAAGCCTCAAACTAGCAAATTTTTCCGGGAACAGTTTGTGTTGGGACTTCTGGCCCACGCCAAATTTTCTGGGTAATTACACATTATGCCAAGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006928 GO:0006950 GO:0006970 GO:0006996 GO:0007097 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009787 GO:0009902 GO:0009903 GO:0009966 GO:0009987 GO:0010029 GO:0010646 GO:0016020 GO:0016043 GO:0019750 GO:0023051 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048580 GO:0048583 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0099515 GO:1900140 GO:1901419 GO:1902265 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

201

Amino Acids

21.63

Weight (kDa)

4.12

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	33 - 70	3.7e-10	Leucine rich repeat N-terminal domain
LRR_14	PF23598	83 - 172	1.3e-07	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42550
fragaria_vesca	FvH4_2g26870
malus_domestica	MD08G1162900.v1.1
prunus_persica	Prupe.1G498000_v2.0.a1
pyrus_communis	pycom08g14070 pycom15g31260
rosa_chinensis	RchiOBHm_Chr6g0295721
rosa_laevigata	RLG00000011772
rosa_multiflora	Rmu_sc0007372.1_g000001 Rmu_sc0007986.1_g000004
rosa_roxburghii	Rroxscaffold_7G00172180
rosa_rugosa	Rorug06G0253800
rosa_samantha	Rh6AG367200 Rh6BG375000 Rh6CG381300 Rh6DG368100
rosa_wichuraiana	Rw6G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
Acc36I	ACCTGC	1 cut(s)	366
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccI	GTMKAC	1 cut(s)	81
AciI	CCGC	1 cut(s)	344
AclI	AACGTT	1 cut(s)	153
AclWI	GGATC	2 cut(s)	137, 150
AcsI	RAATTY	3 cut(s)	467, 523, 568
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	278, 422
AgsI	TTSAA	2 cut(s)	127, 316
AjnI	CCWGG	1 cut(s)	366
AleI	CACNNNNGTG	1 cut(s)	230
AluBI	AGCT	3 cut(s)	113, 135, 349
AluI	AGCT	3 cut(s)	113, 135, 349
Alw26I	GTCTC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	137, 150
AlwNI	CAGNNNCTG	1 cut(s)	367
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	3 cut(s)	11, 21, 119
ApoI	RAATTY	3 cut(s)	467, 523, 568
Asp718I	GGTACC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	558
AsuC2I	CCSGG	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	217
BamHI	GGATCC	1 cut(s)	142
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	3 cut(s)	8, 23, 106
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	368
BcnI	CCSGG	1 cut(s)	532
BcoDI	GTCTC	1 cut(s)	487
BfaI	CTAG	2 cut(s)	296, 518
BfmI	CTRYAG	1 cut(s)	359
BfuAI	ACCTGC	1 cut(s)	366
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	3 cut(s)	12, 22, 120
BlsI	GCNGC	3 cut(s)	13, 23, 121
Bme1390I	CCNGG	2 cut(s)	368, 532
BmgT120I	GGNCC	1 cut(s)	558
BmiI	GGNNCC	3 cut(s)	144, 270, 334
BmrFI	CCNGG	2 cut(s)	368, 532
BmrI	ACTGGG	3 cut(s)	175, 431, 483
BmuI	ACTGGG	3 cut(s)	175, 431, 483
BpmI	CTGGAG	1 cut(s)	389
BpuEI	CTTGAG	2 cut(s)	397, 451
BpuMI	CCSGG	1 cut(s)	532
BsaJI	CCNNGG	1 cut(s)	146
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	278, 422
Bse118I	RCCGGY	1 cut(s)	17
Bse1I	ACTGG	4 cut(s)	170, 426, 444, 478
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	2 cut(s)	278, 422
BseMII	CTCAG	2 cut(s)	243, 296
BseNI	ACTGG	4 cut(s)	170, 426, 444, 478
BseRI	GAGGAG	1 cut(s)	475
BseXI	GCAGC	3 cut(s)	8, 23, 106
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	4 cut(s)	18, 272, 341, 531
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	2 cut(s)	278, 422
BsmAI	GTCTC	1 cut(s)	487
BsmFI	GGGAC	1 cut(s)	563
BsnI	GGCC	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	142, 301, 324, 434, 457
Bsp19I	CCATGG	1 cut(s)	146
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	1 cut(s)	559
BspCNI	CTCAG	2 cut(s)	242, 297
BspLI	GGNNCC	3 cut(s)	144, 270, 334
BspMAI	CTGCAG	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	366
BspPI	GGATC	2 cut(s)	137, 150
BspQI	GCTCTTC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	268
BsrFI	RCCGGY	1 cut(s)	17
BsrI	ACTGG	4 cut(s)	170, 426, 444, 478
BssAI	RCCGGY	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	5 cut(s)	142, 301, 324, 434, 457
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	3 cut(s)	136, 229, 305
BstDSI	CCRYGG	1 cut(s)	146
BstEII	GGTNACC	2 cut(s)	223, 353
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	5 cut(s)	145, 304, 327, 437, 460
BstMAI	GTCTC	1 cut(s)	487
BstMBI	GATC	5 cut(s)	142, 301, 324, 434, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 507
BstNI	CCWGG	1 cut(s)	368
BstPI	GGTNACC	2 cut(s)	223, 353
BstSCI	CCNGG	2 cut(s)	366, 530
BstSFI	CTRYAG	1 cut(s)	359
BstV1I	GCAGC	3 cut(s)	8, 23, 106
BstX2I	RGATCY	2 cut(s)	142, 301
BstXI	CCANNNNNNTGG	1 cut(s)	192
BstYI	RGATCY	2 cut(s)	142, 301
BsuRI	GGCC	1 cut(s)	559
BtgI	CCRYGG	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	4 cut(s)	237, 419, 437, 471
BveI	ACCTGC	1 cut(s)	366
Cac8I	GCNNGC	1 cut(s)	61
CaiI	CAGNNNCTG	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	558
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	3 cut(s)	147, 186, 244
CviQI	GTAC	1 cut(s)	269
DdeI	CTNAG	3 cut(s)	136, 229, 305
DpnI	GATC	5 cut(s)	144, 303, 326, 436, 459
DpnII	GATC	5 cut(s)	142, 301, 324, 434, 457
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EciI	GGCGGA	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	146
Eco91I	GGTNACC	2 cut(s)	223, 353
EcoO65I	GGTNACC	2 cut(s)	223, 353
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	150, 189, 247
FaiI	YATR	6 cut(s)	148, 187, 239, 245, 323, 592
FalI	AAGNNNNNCTT	2 cut(s)	119, 151
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	3 cut(s)	146, 185, 243
FblI	GTMKAC	1 cut(s)	81
Fnu4HI	GCNGC	3 cut(s)	12, 22, 120
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	12, 22, 120
FspBI	CTAG	2 cut(s)	296, 518
GluI	GCNGC	3 cut(s)	12, 22, 120
GsuI	CTGGAG	1 cut(s)	389
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	4 cut(s)	18, 272, 341, 531
Hin1II	CATG	3 cut(s)	150, 189, 247
HincII	GTYRAC	2 cut(s)	36, 181
HindII	GTYRAC	2 cut(s)	36, 181
HinfI	GANTC	2 cut(s)	98, 409
HpaI	GTTAAC	2 cut(s)	36, 181
HpaII	CCGG	4 cut(s)	18, 272, 341, 531
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	36, 82, 181
Hpy188I	TCNGA	5 cut(s)	103, 163, 257, 306, 388
Hpy188III	TCNNGA	2 cut(s)	376, 455
Hpy8I	GTNNAC	3 cut(s)	36, 82, 181
Hpy99I	CGWCG	1 cut(s)	257
HpyAV	CCTTC	3 cut(s)	323, 426, 512
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	2 cut(s)	153, 252
HpyCH4V	TGCA	3 cut(s)	59, 189, 361
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 507
HpyF3I	CTNAG	3 cut(s)	136, 229, 305
HpySE526I	ACGT	2 cut(s)	153, 252
Hsp92II	CATG	3 cut(s)	150, 189, 247
KpnI	GGTACC	1 cut(s)	272
KspAI	GTTAAC	2 cut(s)	36, 181
Kzo9I	GATC	5 cut(s)	142, 301, 324, 434, 457
LguI	GCTCTTC	1 cut(s)	125
LmnI	GCTCC	2 cut(s)	86, 346
Lsp1109I	GCAGC	3 cut(s)	8, 23, 106
MaeI	CTAG	2 cut(s)	296, 518
MaeII	ACGT	2 cut(s)	153, 252
MaeIII	GTNAC	2 cut(s)	223, 353
MalI	GATC	5 cut(s)	144, 303, 326, 436, 459
MboI	GATC	5 cut(s)	142, 301, 324, 434, 457
MboII	GAAGA	2 cut(s)	139, 142
MflI	RGATCY	2 cut(s)	142, 301
MluCI	AATT	5 cut(s)	467, 492, 523, 568, 580
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	8 cut(s)	74, 238, 251, 275, 364, 423, 496, 521
MseI	TTAA	2 cut(s)	35, 180
MslI	CAYNNNNRTG	2 cut(s)	230, 242
MspI	CCGG	4 cut(s)	18, 272, 341, 531
MspR9I	CCNGG	2 cut(s)	368, 532
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	2 cut(s)	119, 507
NciI	CCSGG	1 cut(s)	532
NcoI	CCATGG	1 cut(s)	146
NdeII	GATC	5 cut(s)	142, 301, 324, 434, 457
NlaIII	CATG	3 cut(s)	150, 189, 247
NlaIV	GGNNCC	3 cut(s)	144, 270, 334
NmuCI	GTSAC	1 cut(s)	223
OliI	CACNNNNGTG	1 cut(s)	230
PciSI	GCTCTTC	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	98, 409
PfoI	TCCNGGA	1 cut(s)	530
PkrI	GCNGC	3 cut(s)	13, 23, 121
Psp1406I	AACGTT	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	366
PspEI	GGTNACC	2 cut(s)	223, 353
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	3 cut(s)	144, 270, 334
PspPI	GGNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	363
PstNI	CAGNNNCTG	1 cut(s)	367
PsuI	RGATCY	2 cut(s)	142, 301
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	2 cut(s)	230, 242
SapI	GCTCTTC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	35, 180
SatI	GCNGC	3 cut(s)	12, 22, 120
Sau3AI	GATC	5 cut(s)	142, 301, 324, 434, 457
Sau96I	GGNCC	1 cut(s)	558
ScrFI	CCNGG	2 cut(s)	368, 532
SfcI	CTRYAG	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	230, 242
SmlI	CTYRAG	2 cut(s)	376, 430
SmoI	CTYRAG	2 cut(s)	376, 430
Sse9I	AATT	5 cut(s)	467, 492, 523, 568, 580
SsiI	CCGC	1 cut(s)	344
SspMI	CTAG	2 cut(s)	296, 518
StyD4I	CCNGG	2 cut(s)	366, 530
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	2 cut(s)	156, 255
TaqI	TCGA	4 cut(s)	5, 96, 327, 456
TasI	AATT	5 cut(s)	467, 492, 523, 568, 580
TfiI	GAWTC	2 cut(s)	98, 409
Tru1I	TTAA	2 cut(s)	35, 180
Tru9I	TTAA	2 cut(s)	35, 180
TscAI	CASTG	4 cut(s)	237, 426, 444, 478
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	3 cut(s)	11, 21, 119
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	190, 260
TspGWI	ACGGA	2 cut(s)	63, 99
TspRI	CASTG	4 cut(s)	237, 426, 444, 478
XapI	RAATTY	3 cut(s)	467, 523, 568
XmiI	GTMKAC	1 cut(s)	81
XspI	CTAG	2 cut(s)	296, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.