Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0014333

Physical Location & Seq

Genomic Coordinates Reverse (-)

56560337 .. 56562988

Gene Structure 2652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG367200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2652 bp

ATGGCGGCAGCAGAGAATTCATCAGGTGGCGGAAGGAGGAATTCCAACACTCAGCTCCTGGAAGAGCTAGAAGCGCTCAGTGAGTCACTCTACCAATCCCACACGTCCACCACTACCACTCGAAGAACTGCCTCCCTTGCTCTTCCGCGAACCTCGATACCTGCAATTGCTGCCGCGGCTAAAGTTGAGGAGATCAAAGCCAATAGCACCAAACCGCTGAGAAGGCGTTTGTCTTTGTCGCCTTGGCGCTCACGTCCAAACGAAAATGAACACAAAGATCGAGGCAAGGGGACGAGTAGTATTAATCAGCTGGAGCTGAAGAGCAATGTGGAGGAGAGGTCAAGTAGCACAGAGAAAAAGGGTATTTGGAATTGGAAGCCGATTCGTGCTATATCTCACATTGGAATGCACAAGATCAGCTGCTTGTTTTCGGTAGAGGTTGTCACTGCACAAGGCCTTCCTGCTTCGATGAATGGCCTTCGTATTTCGATATGTGTGAGGAAGAAGGAGAGCAAAGACGGAGCAGTTCAAACAATGCCATCAAGGGTCACACAAGGAGCTGCAGATTTCGAAGAGACCCTTTTCTTTAGGTGCCATGTGTATTGTAGTTCTGGCCAGGGGAAGCCGATGAAGTTTGAGCCACGGCCCTTTTGGATATATGTGTTTGCAGTTGATGCTGAGGAGCTTGATTTTGGCAGAAATTCTGTGGATTTGAGTCAGCTGATTCAGGAGTCCATTGAGAAGAGCCATGAAGGTAAACGAATTCGCCAATGGGATAAGAGCTTTGGATTGGCAGGGAAGGCGAAAGGTGGGGAGCTTGTTCTGAAGTTGGGGTTTCAGATTATGGAGAAAGATGGAGGAGTTGGAATCTATAGTCAAGCTCAGGATTTGAAGAGTGCTAAATCCAAGACATTCTCGTCTTCTTTTGCAAGGAAGCAGTCGAAGACTTCTTTTAGTGTGCCTAGTCCAAAGCTATCAAGCAGAGAAGCATGGACTCCTTCACAAATAGGACAATCTGCTCATGATCTTCATGGAATCGATGAGCTGAATCTTGATGAACCCAACCCGGTTCCAGTATCCTCTTCTTCTTCGGCACAGAAGCCAAAAGAACCAGAAGTACCGAAGGTAGAGGATCTTGATCTTCCAGACTTCGAAGTAGTGGATAAGGGAGTTGAATTCCAAGACAAGGAAGGGGAATATGGGGAATCACAATCAGAAATATCCCTTGATGAAAAATCAGCAATATCGAGTGAGGTTGTGAAGGAAATTGTGCAAGACCAAGTGCATATGAAAAGATTGACAGAGCTGGATTCGATTGCTCAGCAGATTAAAGCTCTTGAATCTATGATGGGGAAAGAAAAAACTGTCGCCAAAGACGAAGAAATTGGATCACAAATATTGGAGGCAGATGAAGAAACAGTTACCAAGGAGTTCCTTCAAATGCTTGAGGATGAGGATATCATAAATGAGTATAAGCTCACCCAAAGTGATATTCCACCACTACAGCTTGAAGGAGCTGAGGATTCCAAAGAGGCTGAATCCGAAGTATTCCTTCCTGATCTAGGAAAGAGCTTAGGCTGTGTGGTTCAAACCAGAGATGGAGGTTACTTGGCATCCATGAATCCTCTGGATACTGTGGTAGCAAGGAAAGATACACCGAAACTTGCCATGCAAATATCAAAACCACTTGTTTTGCCATGGGACCAGTCCATGAGTGGCTTCGAATTGTTCCAAAGGATTGCAGCCATTGGACTTGATGAATTGAATTCCCAAATTTCGACTTTGACGAGCATGGATGACCTGATGGATAAAACCGCAGAACAGATAGCTTTCGAAGGCATTGCTTCTGCAATCATCCAAGGGAGGAACAAAGAAGGTGCAAGCTCGAGTGCTGCACGAACCATTGCTGCTGTGAAAACCATGGCAACTGCAATGAGTGCCGGTAGAAAAGAGAGGATTTCCACAGGGATTTGGAATGTGAATGAAAACCCGTTAACAGCAGAGGAGATTCTTGCATTCTCAATGCAGAAAATTGAGTCCATGGCTCTTGAAGCTTTGAAGATTCAGGCTGAAATGGCAGAGGAAGAAGCCCCATTTGATGTTTCGCCATTGATTGGCACCACAGCAACTGGAGGAAAAGTTCAAAATCAACCACTTGCTTCTTCAATATCGCTCGAGGACTGGATCAAAGACCACAGCTTGGTTGGTGTAGATGACTCATTACAACCAGGTGGTGGTCATACCGAGACGATCACACTGGCAGTGGTTGTTCAGCTGAGGGATCCGGTAAGGCGGTATGAGGCTGTAGGAGGCCCAATGATTGCAGTTATCTATGCAACAAGAGCTGATAACACCGGTGCAGTGGATAAGCATGAGGAGGAGGAGGAGAAGAGATTCAAAGTGGCGAGTTTGCATGTTGGAGGGTTAAAGGTGAGGTCAAGAGGCGTTAGGAGAAATGCATGGGACAGTGAGAAGCAGAGACTAACTGCAATGCAGTGGCTGGTGGCTTATGGATTTGCTAAGGCAGGGAAGAAAGGCAAACATAGTGTGTCATCGAAAGGTCAAGATCTGTTATGGAGCATTTCATCAAGAGTAATGGCTGATATGTGGCTCAAATACATGAGAAACCCAGATGTAAAGTTTACCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006810 GO:0006928 GO:0006950 GO:0006970 GO:0006996 GO:0007097 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009657 GO:0009658 GO:0009787 GO:0009902 GO:0009903 GO:0009966 GO:0009987 GO:0010029 GO:0010646 GO:0016020 GO:0016043 GO:0019750 GO:0023051 GO:0030029 GO:0030048 GO:0030705 GO:0031022 GO:0042592 GO:0044424 GO:0044444 GO:0044464 GO:0046907 GO:0048580 GO:0048583 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051640 GO:0051641 GO:0051644 GO:0051647 GO:0051649 GO:0051656 GO:0051667 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071840 GO:0071944 GO:0099515 GO:1900140 GO:1901419 GO:1902265 GO:1905957 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NT-C2

Protein Analysis

883

Amino Acids

97.15

Weight (kDa)

5.53

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NT-C2	PF10358	137 - 283	2.9e-13	N-terminal C2 in EEIG1 and EHBP1 proteins
PMI1_PMIR1-2_C	PF21745	554 - 702	1.2e-58	PMI1/PMIR1-2, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014333)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G42550
fragaria_vesca	FvH4_2g26870
malus_domestica	MD08G1162900.v1.1
prunus_persica	Prupe.1G498000_v2.0.a1
pyrus_communis	pycom08g14070 pycom15g31260
rosa_chinensis	RchiOBHm_Chr6g0295721
rosa_laevigata	RLG00000011772
rosa_multiflora	Rmu_sc0007372.1_g000001 Rmu_sc0007986.1_g000004
rosa_roxburghii	Rroxscaffold_7G00172180
rosa_rugosa	Rorug06G0253800
rosa_samantha	Rh6AG367200 Rh6BG375000 Rh6CG381300 Rh6DG368100
rosa_wichuraiana	Rw6G032050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	916
Acc36I	ACCTGC	1 cut(s)	169
AccB1I	GGYRCC	2 cut(s)	591, 2117
AccB7I	CCANNNNNTGG	3 cut(s)	2114, 2200, 2234
AccII	CGCG	2 cut(s)	148, 176
AciI	CCGC	8 cut(s)	5, 30, 146, 174, 176, 215, 1815, 2293
AclWI	GGATC	5 cut(s)	1140, 1396, 2192, 2276, 2289
AcoI	YGGCCR	1 cut(s)	613
AcsI	RAATTY	7 cut(s)	16, 40, 700, 762, 1175, 1765, 1773
AcuI	CTGAAG	2 cut(s)	338, 845
AfaI	GTAC	1 cut(s)	1119
AfeI	AGCGCT	1 cut(s)	75
AfiI	CCNNNNNNNGG	5 cut(s)	1186, 1562, 2114, 2200, 2234
AflIII	ACRYGT	1 cut(s)	102
AgeI	ACCGGT	1 cut(s)	2354
AjiI	CACGTC	2 cut(s)	105, 254
AjnI	CCWGG	3 cut(s)	57, 615, 2227
AjuI	GAANNNNNNNTTGG	2 cut(s)	1476, 1508
AloI	GAACNNNNNNTCC	2 cut(s)	2124, 2156
Alw26I	GTCTC	3 cut(s)	569, 2240, 2473
AlwI	GGATC	5 cut(s)	1140, 1396, 2192, 2276, 2289
AlwNI	CAGNNNCTG	3 cut(s)	58, 2129, 2500
Ama87I	CYCGRG	2 cut(s)	1885, 2174
Aor51HI	AGCGCT	1 cut(s)	75
AoxI	GGCC	5 cut(s)	454, 475, 613, 644, 2311
ApeKI	GCWGC	7 cut(s)	8, 170, 420, 560, 1742, 1892, 1907
ApoI	RAATTY	7 cut(s)	16, 40, 700, 762, 1175, 1765, 1773
AseI	ATTAAT	1 cut(s)	303
AsiGI	ACCGGT	1 cut(s)	2354
Asp700I	GAANNNNTTC	1 cut(s)	2393
AspLEI	GCGC	2 cut(s)	76, 249
AspS9I	GGNCC	3 cut(s)	645, 1702, 2312
AsuC2I	CCSGG	1 cut(s)	1067
AsuHPI	GGTGA	2 cut(s)	1471, 2443
AsuII	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
AvaI	CYCGRG	2 cut(s)	1885, 2174
AvaII	GGWCC	1 cut(s)	1702
BaeI	ACNNNNGTAYC	2 cut(s)	1623, 1656
BalI	TGGCCA	1 cut(s)	615
BamHI	GGATCC	1 cut(s)	2281
BanI	GGYRCC	2 cut(s)	591, 2117
BbsI	GAAGAC	2 cut(s)	912, 950
BbvCI	CCTCAGC	3 cut(s)	678, 1518, 2276
BbvI	GCAGC	7 cut(s)	20, 157, 407, 547, 1754, 1879, 1894
BccI	CCATC	5 cut(s)	547, 848, 1342, 1592, 1798
BceAI	ACGGC	1 cut(s)	659
BcgI	CGANNNNNNTGC	2 cut(s)	1823, 1857
BciT130I	CCWGG	3 cut(s)	59, 617, 2229
BciVI	GTATCC	2 cut(s)	1087, 1624
BcnI	CCSGG	1 cut(s)	1067
BcoDI	GTCTC	3 cut(s)	569, 2240, 2473
BfaI	CTAG	3 cut(s)	68, 963, 1562
BfmI	CTRYAG	4 cut(s)	561, 871, 1502, 2304
BfoI	RGCGCY	2 cut(s)	77, 250
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	2 cut(s)	1087, 1624
BglII	AGATCT	1 cut(s)	2566
BlpI	GCTNAGC	1 cut(s)	1320
Bme1390I	CCNGG	4 cut(s)	59, 617, 1067, 2229
Bme18I	GGWCC	1 cut(s)	1702
BmeT110I	CYCGRG	2 cut(s)	1885, 2174
BmgBI	CACGTC	2 cut(s)	105, 254
BmgT120I	GGNCC	3 cut(s)	645, 1702, 2312
BmiI	GGNNCC	5 cut(s)	593, 1071, 1703, 2119, 2283
BmrFI	CCNGG	4 cut(s)	59, 617, 1067, 2229
BmsI	GCATC	2 cut(s)	664, 1622
BpiI	GAAGAC	2 cut(s)	912, 950
BpmI	CTGGAG	2 cut(s)	332, 2151
Bpu10I	CCTNAGC	6 cut(s)	678, 882, 1518, 1573, 2276, 2520
Bpu1102I	GCTNAGC	1 cut(s)	1320
Bpu14I	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
BpuEI	CTTGAG	1 cut(s)	1466
BpuMI	CCSGG	1 cut(s)	1067
Bsa29I	ATCGAT	1 cut(s)	1038
BsaBI	GATNNNNATC	1 cut(s)	1137
BsaI	GGTCTC	1 cut(s)	569
BsaJI	CCNNGG	9 cut(s)	174, 242, 616, 641, 1425, 1697, 1858, 1920, 2040
BsaWI	WCCGGW	2 cut(s)	2284, 2354
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 2124, 2154
Bsc4I	CCNNNNNNNGG	5 cut(s)	1186, 1562, 2114, 2200, 2234
Bse118I	RCCGGY	2 cut(s)	1940, 2354
Bse1I	ACTGG	5 cut(s)	1073, 1705, 2134, 2186, 2262
Bse3DI	GCAATG	5 cut(s)	331, 1839, 1902, 1938, 2496
Bse8I	GATNNNNATC	1 cut(s)	1137
BseBI	CCWGG	3 cut(s)	59, 617, 2229
BseCI	ATCGAT	1 cut(s)	1038
BseDI	CCNNGG	9 cut(s)	174, 242, 616, 641, 1425, 1697, 1858, 1920, 2040
BseGI	GGATG	4 cut(s)	1456, 1613, 1801, 1854
BseJI	GATNNNNATC	1 cut(s)	1137
BseLI	CCNNNNNNNGG	5 cut(s)	1186, 1562, 2114, 2200, 2234
BseMI	GCAATG	5 cut(s)	331, 1839, 1902, 1938, 2496
BseMII	CTCAG	8 cut(s)	65, 91, 209, 669, 896, 1334, 1509, 2267
BseNI	ACTGG	5 cut(s)	1073, 1705, 2134, 2186, 2262
BseRI	GAGGAG	9 cut(s)	203, 347, 695, 873, 2018, 2390, 2393, 2396, 2399
BseXI	GCAGC	7 cut(s)	20, 157, 407, 547, 1754, 1879, 1894
BsgI	GTGCAG	3 cut(s)	432, 1878, 2379
Bsh1236I	CGCG	2 cut(s)	148, 176
BshFI	GGCC	5 cut(s)	456, 477, 615, 646, 2313
BshNI	GGYRCC	2 cut(s)	591, 2117
BshTI	ACCGGT	1 cut(s)	2354
BshVI	ATCGAT	1 cut(s)	1038
BsiHKCI	CYCGRG	2 cut(s)	1885, 2174
BsiSI	CCGG	4 cut(s)	1067, 1941, 2285, 2355
BslFI	GGGAC	3 cut(s)	304, 1715, 2477
BslI	CCNNNNNNNGG	5 cut(s)	1186, 1562, 2114, 2200, 2234
BsmAI	GTCTC	3 cut(s)	569, 2240, 2473
BsmBI	CGTCTC	1 cut(s)	2240
BsmFI	GGGAC	3 cut(s)	304, 1715, 2477
BsmI	GAATGC	2 cut(s)	411, 2015
BsnI	GGCC	5 cut(s)	456, 477, 615, 646, 2313
Bso31I	GGTCTC	1 cut(s)	569
BsoBI	CYCGRG	2 cut(s)	1885, 2174
Bsp119I	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
Bsp1720I	GCTNAGC	1 cut(s)	1320
Bsp19I	CCATGG	3 cut(s)	1697, 1920, 2040
BspACI	CCGC	8 cut(s)	5, 30, 146, 174, 176, 215, 1815, 2293
BspANI	GGCC	5 cut(s)	456, 477, 615, 646, 2313
BspCNI	CTCAG	8 cut(s)	64, 90, 210, 670, 895, 1333, 1510, 2268
BspDI	ATCGAT	1 cut(s)	1038
BspFNI	CGCG	2 cut(s)	148, 176
BspHI	TCATGA	1 cut(s)	1021
BspLI	GGNNCC	5 cut(s)	593, 1071, 1703, 2119, 2283
BspMAI	CTGCAG	1 cut(s)	565
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	5 cut(s)	1140, 1396, 2192, 2276, 2289
BspQI	GCTCTTC	4 cut(s)	57, 147, 314, 737
BspT104I	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
BspT107I	GGYRCC	2 cut(s)	591, 2117
BspTNI	GGTCTC	1 cut(s)	569
BsrDI	GCAATG	5 cut(s)	331, 1839, 1902, 1938, 2496
BsrFI	RCCGGY	2 cut(s)	1940, 2354
BsrI	ACTGG	5 cut(s)	1073, 1705, 2134, 2186, 2262
BssAI	RCCGGY	2 cut(s)	1940, 2354
BssECI	CCNNGG	9 cut(s)	174, 242, 616, 641, 1425, 1697, 1858, 1920, 2040
BssT1I	CCWWGG	6 cut(s)	242, 1425, 1697, 1858, 1920, 2040
Bst2UI	CCWGG	3 cut(s)	59, 617, 2229
Bst4CI	ACNGT	4 cut(s)	1366, 1420, 1636, 2468
Bst6I	CTCTTC	8 cut(s)	57, 147, 314, 567, 737, 887, 1087, 2384
BstAPI	GCANNNNNTGC	3 cut(s)	170, 674, 1937
BstBI	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
BstC8I	GCNNGC	1 cut(s)	1882
BstDSI	CCRYGG	5 cut(s)	174, 641, 1697, 1920, 2040
BstENI	CCTNNNNNAGG	1 cut(s)	1560
BstF5I	GGATG	4 cut(s)	1456, 1613, 1801, 1854
BstFNI	CGCG	2 cut(s)	148, 176
BstH2I	RGCGCY	2 cut(s)	77, 250
BstHHI	GCGC	2 cut(s)	76, 249
BstMAI	GTCTC	3 cut(s)	569, 2240, 2473
BstNI	CCWGG	3 cut(s)	59, 617, 2229
BstNSI	RCATGY	1 cut(s)	2417
BstSCI	CCNGG	4 cut(s)	57, 615, 1065, 2227
BstSFI	CTRYAG	4 cut(s)	561, 871, 1502, 2304
BstUI	CGCG	2 cut(s)	148, 176
BstV1I	GCAGC	7 cut(s)	20, 157, 407, 547, 1754, 1879, 1894
BstV2I	GAAGAC	2 cut(s)	912, 950
BstX2I	RGATCY	3 cut(s)	1132, 2281, 2566
BstYI	RGATCY	3 cut(s)	1132, 2281, 2566
Bsu15I	ATCGAT	1 cut(s)	1038
BsuI	GTATCC	2 cut(s)	1087, 1624
BsuRI	GGCC	5 cut(s)	456, 477, 615, 646, 2313
BsuTUI	ATCGAT	1 cut(s)	1038
BtgI	CCRYGG	5 cut(s)	174, 641, 1697, 1920, 2040
BtrI	CACGTC	2 cut(s)	105, 254
BtsCI	GGATG	4 cut(s)	1456, 1613, 1801, 1854
BtsI	GCAGTG	4 cut(s)	444, 2268, 2367, 2501
BtsIMutI	CAGTG	7 cut(s)	85, 444, 2255, 2268, 2367, 2473, 2501
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	1882
CaiI	CAGNNNCTG	3 cut(s)	58, 2129, 2500
CciI	TCATGA	1 cut(s)	1021
CfoI	GCGC	2 cut(s)	76, 249
Cfr10I	RCCGGY	2 cut(s)	1940, 2354
Cfr13I	GGNCC	3 cut(s)	645, 1702, 2312
Cfr42I	CCGCGG	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	1038
CsiI	ACCWGGT	1 cut(s)	2227
Csp6I	GTAC	1 cut(s)	1118
CspAI	ACCGGT	1 cut(s)	2354
CspCI	CAANNNNNGTGG	2 cut(s)	1674, 1709
CviQI	GTAC	1 cut(s)	1118
DrdI	GACNNNNNNGTC	1 cut(s)	916
DseDI	GACNNNNNNGTC	1 cut(s)	916
EaeI	YGGCCR	1 cut(s)	613
Eam1104I	CTCTTC	8 cut(s)	57, 147, 314, 567, 737, 887, 1087, 2384
EarI	CTCTTC	8 cut(s)	57, 147, 314, 567, 737, 887, 1087, 2384
EciI	GGCGGA	1 cut(s)	45
Eco130I	CCWWGG	6 cut(s)	242, 1425, 1697, 1858, 1920, 2040
Eco147I	AGGCCT	1 cut(s)	456
Eco31I	GGTCTC	1 cut(s)	569
Eco32I	GATATC	1 cut(s)	1459
Eco47I	GGWCC	1 cut(s)	1702
Eco47III	AGCGCT	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	338, 845
Eco88I	CYCGRG	2 cut(s)	1885, 2174
EcoNI	CCTNNNNNAGG	1 cut(s)	1560
EcoRI	GAATTC	5 cut(s)	16, 40, 762, 1175, 1765
EcoRII	CCWGG	3 cut(s)	57, 615, 2227
EcoRV	GATATC	1 cut(s)	1459
EcoT14I	CCWWGG	6 cut(s)	242, 1425, 1697, 1858, 1920, 2040
EcoT22I	ATGCAT	1 cut(s)	2461
ErhI	CCWWGG	6 cut(s)	242, 1425, 1697, 1858, 1920, 2040
Esp3I	CGTCTC	1 cut(s)	2240
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 1536, 1568
FaqI	GGGAC	3 cut(s)	304, 1715, 2477
FauNDI	CATATG	1 cut(s)	1287
FokI	GGATG	4 cut(s)	1463, 1600, 1808, 1841
FspBI	CTAG	3 cut(s)	68, 963, 1562
GlaI	GCGC	2 cut(s)	75, 248
GsuI	CTGGAG	2 cut(s)	332, 2151
HaeII	RGCGCY	2 cut(s)	77, 250
HaeIII	GGCC	5 cut(s)	456, 477, 615, 646, 2313
HapII	CCGG	4 cut(s)	1067, 1941, 2285, 2355
HhaI	GCGC	2 cut(s)	76, 249
Hin6I	GCGC	2 cut(s)	74, 247
HinP1I	GCGC	2 cut(s)	74, 247
HincII	GTYRAC	1 cut(s)	1995
HindII	GTYRAC	1 cut(s)	1995
HindIII	AAGCTT	1 cut(s)	2052
HpaI	GTTAAC	1 cut(s)	1995
HpaII	CCGG	4 cut(s)	1067, 1941, 2285, 2355
HphI	GGTGA	2 cut(s)	1471, 2443
Hpy166II	GTNNAC	4 cut(s)	108, 758, 1995, 2643
Hpy188I	TCNGA	4 cut(s)	825, 840, 1216, 1543
Hpy8I	GTNNAC	4 cut(s)	108, 758, 1995, 2643
HpyCH4III	ACNGT	4 cut(s)	1366, 1420, 1636, 2468
HpyCH4IV	ACGT	2 cut(s)	104, 253
HpySE526I	ACGT	2 cut(s)	104, 253
HspAI	GCGC	2 cut(s)	74, 247
KspAI	GTTAAC	1 cut(s)	1995
KspI	CCGCGG	1 cut(s)	177
LguI	GCTCTTC	4 cut(s)	57, 147, 314, 737
LmnI	GCTCC	8 cut(s)	60, 313, 521, 557, 682, 814, 1514, 2577
Lsp1109I	GCAGC	7 cut(s)	20, 157, 407, 547, 1754, 1879, 1894
LweI	GCATC	2 cut(s)	664, 1622
MabI	ACCWGGT	1 cut(s)	2227
MaeI	CTAG	3 cut(s)	68, 963, 1562
MaeII	ACGT	2 cut(s)	104, 253
MaeIII	GTNAC	5 cut(s)	84, 442, 547, 1420, 1604
MfeI	CAATTG	2 cut(s)	165, 2647
MflI	RGATCY	3 cut(s)	1132, 2281, 2566
MlsI	TGGCCA	1 cut(s)	615
MluNI	TGGCCA	1 cut(s)	615
MlyI	GAGTC	6 cut(s)	92, 724, 740, 988, 2045, 2210
MmeI	TCCRAC	3 cut(s)	69, 844, 2398
Mox20I	TGGCCA	1 cut(s)	615
Mph1103I	ATGCAT	1 cut(s)	2461
MroXI	GAANNNNTTC	1 cut(s)	2393
MscI	TGGCCA	1 cut(s)	615
MseI	TTAA	4 cut(s)	303, 1329, 1994, 2426
MslI	CAYNNNNRTG	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	615
MspA1I	CMGCKG	6 cut(s)	176, 217, 310, 420, 721, 2275
MspI	CCGG	4 cut(s)	1067, 1941, 2285, 2355
MspR9I	CCNGG	4 cut(s)	59, 617, 1067, 2229
MunI	CAATTG	2 cut(s)	165, 2647
Mva1269I	GAATGC	2 cut(s)	411, 2015
MvaI	CCWGG	3 cut(s)	59, 617, 2229
MvnI	CGCG	2 cut(s)	148, 176
NciI	CCSGG	1 cut(s)	1067
NcoI	CCATGG	3 cut(s)	1697, 1920, 2040
NdeI	CATATG	1 cut(s)	1287
NlaIV	GGNNCC	5 cut(s)	593, 1071, 1703, 2119, 2283
NmuCI	GTSAC	3 cut(s)	84, 442, 547
NsiI	ATGCAT	1 cut(s)	2461
NspI	RCATGY	1 cut(s)	2417
NspV	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
PaeR7I	CTCGAG	2 cut(s)	1885, 2174
PagI	TCATGA	1 cut(s)	1021
PceI	AGGCCT	1 cut(s)	456
PciSI	GCTCTTC	4 cut(s)	57, 147, 314, 737
PcsI	WCGNNNNNNNCGW	2 cut(s)	1374, 1784
PctI	GAATGC	2 cut(s)	411, 2015
PdmI	GAANNNNTTC	1 cut(s)	2393
PflMI	CCANNNNNTGG	3 cut(s)	2114, 2200, 2234
PfoI	TCCNGGA	1 cut(s)	57
PinAI	ACCGGT	1 cut(s)	2354
PleI	GAGTC	6 cut(s)	91, 723, 739, 988, 2044, 2210
PpsI	GAGTC	6 cut(s)	91, 723, 739, 988, 2044, 2210
PshBI	ATTAAT	1 cut(s)	303
Psp6I	CCWGG	3 cut(s)	57, 615, 2227
PspGI	CCWGG	3 cut(s)	57, 615, 2227
PspN4I	GGNNCC	5 cut(s)	593, 1071, 1703, 2119, 2283
PspPI	GGNCC	3 cut(s)	645, 1702, 2312
PspXI	VCTCGAGB	2 cut(s)	1885, 2174
PsrI	GAACNNNNNNTAC	2 cut(s)	1101, 1133
PstI	CTGCAG	1 cut(s)	565
PstNI	CAGNNNCTG	3 cut(s)	58, 2129, 2500
PsuI	RGATCY	3 cut(s)	1132, 2281, 2566
PvuII	CAGCTG	4 cut(s)	310, 420, 721, 2275
RsaI	GTAC	1 cut(s)	1119
RsaNI	GTAC	1 cut(s)	1118
RseI	CAYNNNNRTG	1 cut(s)	404
SacII	CCGCGG	1 cut(s)	177
SapI	GCTCTTC	4 cut(s)	57, 147, 314, 737
SaqAI	TTAA	4 cut(s)	303, 1329, 1994, 2426
Sau96I	GGNCC	3 cut(s)	645, 1702, 2312
SchI	GAGTC	6 cut(s)	92, 724, 740, 988, 2045, 2210
ScrFI	CCNGG	4 cut(s)	59, 617, 1067, 2229
SexAI	ACCWGGT	1 cut(s)	2227
SfaNI	GCATC	2 cut(s)	664, 1622
SfcI	CTRYAG	4 cut(s)	561, 871, 1502, 2304
Sfr274I	CTCGAG	2 cut(s)	1885, 2174
Sfr303I	CCGCGG	1 cut(s)	177
SfuI	TTCGAA	4 cut(s)	570, 1152, 1722, 1833
SgrAI	CRCCGGYG	1 cut(s)	2354
SgrBI	CCGCGG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	1702
SlaI	CTCGAG	2 cut(s)	1885, 2174
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	3 cut(s)	1445, 1885, 2174
SmoI	CTYRAG	3 cut(s)	1445, 1885, 2174
SseBI	AGGCCT	1 cut(s)	456
SsiI	CCGC	8 cut(s)	5, 30, 146, 174, 176, 215, 1815, 2293
SspI	AATATT	1 cut(s)	1398
SspMI	CTAG	3 cut(s)	68, 963, 1562
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	4 cut(s)	57, 615, 1065, 2227
StyI	CCWWGG	6 cut(s)	242, 1425, 1697, 1858, 1920, 2040
TaaI	ACNGT	4 cut(s)	1366, 1420, 1636, 2468
TaiI	ACGT	2 cut(s)	107, 256
TauI	GCSGC	3 cut(s)	8, 176, 179
Tru1I	TTAA	4 cut(s)	303, 1329, 1994, 2426
Tru9I	TTAA	4 cut(s)	303, 1329, 1994, 2426
TscAI	CASTG	7 cut(s)	85, 451, 2262, 2268, 2367, 2473, 2501
TseFI	GTSAC	3 cut(s)	84, 442, 547
TseI	GCWGC	7 cut(s)	8, 170, 420, 560, 1742, 1892, 1907
Tsp45I	GTSAC	3 cut(s)	84, 442, 547
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	7 cut(s)	85, 451, 2262, 2268, 2367, 2473, 2501
Van91I	CCANNNNNTGG	3 cut(s)	2114, 2200, 2234
VpaK11BI	GGWCC	1 cut(s)	1702
VspI	ATTAAT	1 cut(s)	303
XagI	CCTNNNNNAGG	1 cut(s)	1560
XapI	RAATTY	7 cut(s)	16, 40, 700, 762, 1175, 1765, 1773
XceI	RCATGY	1 cut(s)	2417
XcmI	CCANNNNNNNNNTGG	4 cut(s)	648, 1624, 1712, 2201
XhoI	CTCGAG	2 cut(s)	1885, 2174
XmnI	GAANNNNTTC	1 cut(s)	2393
XspI	CTAG	3 cut(s)	68, 963, 1562
Zsp2I	ATGCAT	1 cut(s)	2461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.