pycom08g19570

Protein BYPASS1-related

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0020441
Physical Location & Seq
Forward (+)
19600659 .. 19600871
213 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 213 bp
ATGACAGACTTGATGGATCTGGTTCAGTTCCCGTTAACAGAGGAACAGAAAGTGGAAGTCGAACAAGAACTGCAGGAGCTAGCATCGATTTGTGAAAGTTTTAAGAATGGACTGGATCCGCTGGAACGCCAAATCAGGGAAGTATTCCGTCAGATTATGAACTGCAGAACTGAAGGTCTCGAACTTTTGAGTCGCGCAAACAATCTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BPS1

Protein Analysis

71

Amino Acids

8.21

Weight (kDa)

4.4

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ROH1-like PF05633 1 - 63 8e-18 Protein ROH1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020441)

Species Orthologous Gene IDs
pyrus_communis pycom08g19570
rosa_samantha Rh1AG047400 Rh1AG414200 Rh2BG325700 Rh5BG001100 Rh6AG135500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 195
AciI CCGC 1 cut(s) 119
AclWI GGATC 3 cut(s) 24, 110, 123
AcuI CTGAAG 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 79
AluI AGCT 1 cut(s) 79
Alw26I GTCTC 1 cut(s) 182
AlwI GGATC 3 cut(s) 24, 110, 123
AspLEI GCGC 1 cut(s) 197
AsuNHI GCTAGC 1 cut(s) 79
BamHI GGATCC 1 cut(s) 115
BccI CCATC 1 cut(s) 7
BcoDI GTCTC 1 cut(s) 182
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 2 cut(s) 71, 163
BmiI GGNNCC 1 cut(s) 117
BmsI GCATC 1 cut(s) 92
BmtI GCTAGC 1 cut(s) 83
Bsa29I ATCGAT 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 182
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse1I ACTGG 1 cut(s) 117
BseCI ATCGAT 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 136
BseNI ACTGG 1 cut(s) 117
Bsh1236I CGCG 1 cut(s) 195
BshVI ATCGAT 1 cut(s) 86
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 182
Bso31I GGTCTC 1 cut(s) 182
Bsp143I GATC 2 cut(s) 16, 115
BspACI CCGC 1 cut(s) 119
BspDI ATCGAT 1 cut(s) 86
BspFNI CGCG 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 2 cut(s) 75, 167
BspOI GCTAGC 1 cut(s) 83
BspPI GGATC 3 cut(s) 24, 110, 123
BspTNI GGTCTC 1 cut(s) 182
BsrI ACTGG 1 cut(s) 117
BssMI GATC 2 cut(s) 16, 115
BstC8I GCNNGC 1 cut(s) 81
BstFNI CGCG 1 cut(s) 195
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 2 cut(s) 19, 118
BstMAI GTCTC 1 cut(s) 182
BstMBI GATC 2 cut(s) 16, 115
BstSFI CTRYAG 2 cut(s) 71, 163
BstUI CGCG 1 cut(s) 195
BstX2I RGATCY 2 cut(s) 16, 115
BstYI RGATCY 2 cut(s) 16, 115
Bsu15I ATCGAT 1 cut(s) 86
BsuTUI ATCGAT 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 81
CfoI GCGC 1 cut(s) 197
ClaI ATCGAT 1 cut(s) 86
CviJI RGCY 1 cut(s) 79
CviKI_1 RGCY 1 cut(s) 79
DpnI GATC 2 cut(s) 18, 117
DpnII GATC 2 cut(s) 16, 115
Eco31I GGTCTC 1 cut(s) 182
Eco57I CTGAAG 1 cut(s) 192
FaiI YATR 1 cut(s) 158
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 196
HhaI GCGC 1 cut(s) 197
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 36
HindII GTYRAC 1 cut(s) 36
HinfI GANTC 1 cut(s) 190
HpaI GTTAAC 1 cut(s) 36
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 1 cut(s) 153
Hpy188III TCNNGA 2 cut(s) 179, 206
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 73, 165
HspAI GCGC 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 36
Kzo9I GATC 2 cut(s) 16, 115
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 5, 59, 98, 107, 121, 191
LweI GCATC 1 cut(s) 92
MaeI CTAG 1 cut(s) 80
MalI GATC 2 cut(s) 18, 117
MboI GATC 2 cut(s) 16, 115
MflI RGATCY 2 cut(s) 16, 115
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 1 cut(s) 34
MseI TTAA 2 cut(s) 35, 102
MspA1I CMGCKG 1 cut(s) 121
MvnI CGCG 1 cut(s) 195
NdeII GATC 2 cut(s) 16, 115
NheI GCTAGC 1 cut(s) 79
NlaIV GGNNCC 1 cut(s) 117
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 117
PstI CTGCAG 2 cut(s) 75, 167
PsuI RGATCY 2 cut(s) 16, 115
SaqAI TTAA 2 cut(s) 35, 102
Sau3AI GATC 2 cut(s) 16, 115
SchI GAGTC 1 cut(s) 199
SetI ASST 2 cut(s) 81, 178
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 2 cut(s) 71, 163
SsiI CCGC 1 cut(s) 119
SspMI CTAG 1 cut(s) 80
TaqI TCGA 3 cut(s) 60, 86, 180
Tru1I TTAA 2 cut(s) 35, 102
Tru9I TTAA 2 cut(s) 35, 102
TspDTI ATGAA 1 cut(s) 173
TspGWI ACGGA 1 cut(s) 137
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.