Rh2BG325700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0020441
Physical Location & Seq
Forward (+)
39792532 .. 39792894
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG325700.1

Sequence Viewer

Length: 363 bp
ATGGCACCCAGCAAAGGAAGATCCAGTCCCAATGTGAAGCATGCGAGAGCGCCAACGAGTAGGCGTGGCCTACTATCTCAGAAAGCACATCCATCCGTAGAGGGTCTCACAAATGCAGTGGTAAATCCAGGAGGGGATGGGGTCAAGGACGACACTTATAATTCAATTAACCATAAAGCCACATCACTGTCTAGTGTTGCCAACGGAAGACCCAATTTGGTGTACAAAGCAGCCAAACCGGTGACTATGAACAAGCCAATATTGCCCAGCAAAGGATGTCAAGGGAGCCAATACTTTATAGTACTCTACCTCCCTATTGCATACAAATCTGGGAAGTGTGATATAATTGTTATTCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.71

Weight (kDa)

10.01

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020441)

Species Orthologous Gene IDs
pyrus_communis pycom08g19570
rosa_samantha Rh1AG047400 Rh1AG414200 Rh2BG325700 Rh5BG001100 Rh6AG135500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
AccB1I GGYRCC 1 cut(s) 4
AclWI GGATC 1 cut(s) 15
AfaI GTAC 2 cut(s) 224, 303
AfiI CCNNNNNNNGG 2 cut(s) 14, 272
AgeI ACCGGT 1 cut(s) 238
AgsI TTSAA 1 cut(s) 165
AjnI CCWGG 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 15
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 1 cut(s) 230
AsiGI ACCGGT 1 cut(s) 238
AspLEI GCGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 253
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 214
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 100, 131
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 6, 287
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 214
BsaI GGTCTC 1 cut(s) 110
BsaWI WCCGGW 1 cut(s) 238
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 272
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 4 cut(s) 88, 92, 142, 281
BseLI CCNNNNNNNGG 2 cut(s) 14, 272
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 242
BseYI CCCAGC 2 cut(s) 8, 266
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 4
BshTI ACCGGT 1 cut(s) 238
BsiSI CCGG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 14, 272
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 1 cut(s) 12
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 110
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 20
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 6, 287
BspPI GGATC 1 cut(s) 15
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 110
BsrFI RCCGGY 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 238
BssMI GATC 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 189
BstAUI TGTACA 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 4 cut(s) 88, 92, 142, 281
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 1 cut(s) 262
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 214
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 4 cut(s) 88, 92, 142, 281
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 185
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 238
Csp6I GTAC 2 cut(s) 223, 302
CspAI ACCGGT 1 cut(s) 238
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 2 cut(s) 41, 356
CviJI RGCY 5 cut(s) 69, 179, 233, 256, 288
CviKI_1 RGCY 5 cut(s) 69, 179, 233, 256, 288
CviQI GTAC 2 cut(s) 223, 302
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
Eco31I GGTCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 44, 359
FaiI YATR 8 cut(s) 42, 159, 174, 248, 299, 322, 344, 357
FaqI GGGAC 1 cut(s) 12
FatI CATG 2 cut(s) 40, 355
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 4 cut(s) 75, 79, 149, 288
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 1 cut(s) 192
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 231
GsaI CCCAGC 2 cut(s) 12, 270
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 69
HapII CCGG 1 cut(s) 239
HhaI GCGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 44, 359
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 253
Hpy166II GTNNAC 1 cut(s) 223
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 223
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 116, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 262
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 44, 359
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 285
LpnPI CCDG 7 cut(s) 22, 37, 114, 141, 252, 280, 315
Lsp1109I GCAGC 1 cut(s) 242
MaeI CTAG 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 2 cut(s) 30, 219
MflI RGATCY 1 cut(s) 20
MluCI AATT 4 cut(s) 160, 165, 214, 345
MnlI CCTC 3 cut(s) 94, 125, 320
MseI TTAA 2 cut(s) 168, 361
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 262
NdeII GATC 1 cut(s) 20
NlaIII CATG 2 cut(s) 44, 359
NlaIV GGNNCC 2 cut(s) 6, 287
NmuCI GTSAC 1 cut(s) 241
NspI RCATGY 1 cut(s) 44
PaeI GCATGC 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 127
PinAI ACCGGT 1 cut(s) 238
PkrI GCNGC 1 cut(s) 232
PsiI TTATAA 1 cut(s) 159
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 2 cut(s) 8, 266
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 6, 287
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 2 cut(s) 224, 303
RsaNI GTAC 2 cut(s) 223, 302
SaqAI TTAA 2 cut(s) 168, 361
SatI GCNGC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 20
ScaI AGTACT 1 cut(s) 303
ScrFI CCNGG 1 cut(s) 129
SetI ASST 1 cut(s) 312
SphI GCATGC 1 cut(s) 44
Sse9I AATT 4 cut(s) 160, 165, 214, 345
SspI AATATT 1 cut(s) 261
SspMI CTAG 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 189
TasI AATT 4 cut(s) 160, 165, 214, 345
TatI WGTACW 2 cut(s) 222, 301
Tru1I TTAA 2 cut(s) 168, 361
Tru9I TTAA 2 cut(s) 168, 361
TscAI CASTG 2 cut(s) 123, 192
TseFI GTSAC 1 cut(s) 241
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 263, 344
TspGWI ACGGA 2 cut(s) 85, 219
TspRI CASTG 2 cut(s) 123, 192
XceI RCATGY 1 cut(s) 44
XspI CTAG 1 cut(s) 192
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.