Rh1AG047400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0020441
Physical Location & Seq
Forward (+)
8084587 .. 8086580
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG047400.1

Sequence Viewer

Length: 570 bp
ATGGCACCCAGCAAAGGAAGAACCCGTCCCAATGTGAAGCGTGCGAGAGCGCCAGCGACAAGGCGTGGCCTACGATCTCAGAAAGCACATCCATCCGTAGAGGGTCTCACAAATGCAGTGGTAAATCCAGGAGGGGACAAAGCCACATCACTGTCTAGTGCTGCCAACGGAAGACCCAATTTGGTGGACAAAGCAGCCAAATCGGTGACTATGAACAAACCAATATTGCCCAGCAAAGGATGTCTAGGGAGCCAATACTTTACGGACGTTGCACTAAGGGGAAAGGATGAAGAAATACTGCAGCTAAGAAAGGAATTGGAAATTGCCTTGATGAATTCGGGTGCTAATTCATTGGCAGATGGCAAGAATCATATGAATTGTGGCAATGGGCATAACAAAAATGTGCAGGAAAAGCACGTTGTAGGCAAACAAGATTTGAGGGGGATACAAGTAGCGAGGGTAAGACTACTGATGTTATGTCAGATAGTTCAAGTGATGATGATTGGGGTGTATCTAACCGAGAGCGTGTTTTTGGTTGGCTGCCTACCAATGCTGTGGGTTGGAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

189

Amino Acids

20.41

Weight (kDa)

10.16

Isoelectric Point (pI)

38.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020441)

Species Orthologous Gene IDs
pyrus_communis pycom08g19570
rosa_samantha Rh1AG047400 Rh1AG414200 Rh2BG325700 Rh5BG001100 Rh6AG135500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AcsI RAATTY 1 cut(s) 334
AfiI CCNNNNNNNGG 2 cut(s) 14, 236
AgsI TTSAA 1 cut(s) 491
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 4 cut(s) 161, 194, 301, 540
ApoI RAATTY 1 cut(s) 334
AspLEI GCGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 217
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 4 cut(s) 148, 206, 313, 527
BccI CCATC 2 cut(s) 100, 353
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 1 cut(s) 129
BciVI GTATCC 1 cut(s) 438
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 156, 245
BfmI CTRYAG 1 cut(s) 299
BfoI RGCGCY 1 cut(s) 53
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 4 cut(s) 162, 195, 302, 541
BlsI GCNGC 4 cut(s) 163, 196, 303, 542
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 6, 251
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 110
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 236
Bse3DI GCAATG 1 cut(s) 391
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 4 cut(s) 88, 92, 245, 292
BseLI CCNNNNNNNGG 2 cut(s) 14, 236
BseMI GCAATG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 92
BseXI GCAGC 4 cut(s) 148, 206, 313, 527
BseYI CCCAGC 2 cut(s) 8, 230
BsgI GTGCAG 1 cut(s) 425
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 2 cut(s) 12, 149
BslI CCNNNNNNNGG 2 cut(s) 14, 236
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 12, 149
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 6, 251
BspMAI CTGCAG 1 cut(s) 303
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 391
BssMI GATC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 153
BstC8I GCNNGC 2 cut(s) 42, 54
BstDEI CTNAG 3 cut(s) 78, 275, 305
BstF5I GGATG 4 cut(s) 88, 92, 245, 292
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 299
BstV1I GCAGC 4 cut(s) 148, 206, 313, 527
BstV2I GAAGAC 1 cut(s) 178
BstXI CCANNNNNNTGG 2 cut(s) 184, 555
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 4 cut(s) 88, 92, 245, 292
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 2 cut(s) 123, 149
Cac8I GCNNGC 2 cut(s) 42, 54
CfoI GCGC 1 cut(s) 52
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviJI RGCY 6 cut(s) 69, 143, 197, 252, 304, 540
CviKI_1 RGCY 6 cut(s) 69, 143, 197, 252, 304, 540
DdeI CTNAG 3 cut(s) 78, 275, 305
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 110
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 127
FaiI YATR 5 cut(s) 212, 372, 374, 393, 478
FaqI GGGAC 2 cut(s) 12, 149
FauNDI CATATG 1 cut(s) 372
Fnu4HI GCNGC 4 cut(s) 162, 195, 302, 541
FokI GGATG 4 cut(s) 75, 79, 252, 299
Fsp4HI GCNGC 4 cut(s) 162, 195, 302, 541
FspBI CTAG 2 cut(s) 156, 245
GlaI GCGC 1 cut(s) 51
GluI GCNGC 4 cut(s) 162, 195, 302, 541
GsaI CCCAGC 2 cut(s) 12, 234
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 52
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HinfI GANTC 1 cut(s) 367
HphI GGTGA 1 cut(s) 217
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 81, 483
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 153
HpyCH4IV ACGT 2 cut(s) 267, 417
HpyCH4V TGCA 4 cut(s) 116, 272, 301, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 3 cut(s) 78, 275, 305
HpySE526I ACGT 2 cut(s) 267, 417
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 22, 66, 114, 141, 244, 392
Lsp1109I GCAGC 4 cut(s) 148, 206, 313, 527
MaeI CTAG 2 cut(s) 156, 245
MaeII ACGT 2 cut(s) 267, 417
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 3 cut(s) 30, 183, 302
MluCI AATT 6 cut(s) 178, 314, 321, 334, 346, 376
MmeI TCCRAC 1 cut(s) 541
MnlI CCTC 4 cut(s) 94, 125, 432, 450
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 412
NdeI CATATG 1 cut(s) 372
NdeII GATC 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 6, 251
NmuCI GTSAC 1 cut(s) 205
PfeI GAWTC 1 cut(s) 367
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 4 cut(s) 163, 196, 303, 542
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 2 cut(s) 8, 230
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 6, 251
PstI CTGCAG 1 cut(s) 303
SatI GCNGC 4 cut(s) 162, 195, 302, 541
Sau3AI GATC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 129
SetI ASST 3 cut(s) 270, 306, 420
SfcI CTRYAG 1 cut(s) 299
Sse9I AATT 6 cut(s) 178, 314, 321, 334, 346, 376
SspI AATATT 1 cut(s) 225
SspMI CTAG 2 cut(s) 156, 245
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 1 cut(s) 153
TaiI ACGT 2 cut(s) 270, 420
TasI AATT 6 cut(s) 178, 314, 321, 334, 346, 376
TfiI GAWTC 1 cut(s) 367
TscAI CASTG 2 cut(s) 123, 156
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 4 cut(s) 161, 194, 301, 540
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 5 cut(s) 227, 303, 339, 347, 389
TspGWI ACGGA 3 cut(s) 85, 183, 278
TspRI CASTG 2 cut(s) 123, 156
XapI RAATTY 1 cut(s) 334
XspI CTAG 2 cut(s) 156, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.