Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0020441

Physical Location & Seq

Genomic Coordinates Reverse (-)

64647888 .. 64648452

Gene Structure 565 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG414200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCACCCAGCAAAGGAAGAACCCGTCCCAATGTGAAGCGTGCGAGAGCGCCAGCGACAAGGCGTGGCCTACGATCTCAGAAAGCACATCCATCCGTAGAGGGTCTCACAAATGCAGTGGTAAATCCAGGAGGGGACAAAGCCACATCACTGTCTAGTGCTGCCAACGGAAGACCCAATTTGGTGGACAAAGCCACATCGCTGTCTAGTGCTGCCAAAGGAAGACCCAATTTGGTGGACAAAGCAGCCAAATCGGTGACTATGAACAAGCCAATATTGCCCAGCAAAGGATGTCTAGGGAGCCAATACTTTACGAATGGATTGGGTCCACTGGAACGCCAAATTAGGGATGTATTCCGCAGGATTCTGAATTGCCGAACTGAGGGTCTTGAACTTTTGAGTAAGGGAAGCAATCTGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BPS1

Protein Analysis

140

Amino Acids

14.87

Weight (kDa)

11.16

Isoelectric Point (pI)

40.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020441)

Species	Orthologous Gene IDs
pyrus_communis	pycom08g19570
rosa_samantha	Rh1AG047400 Rh1AG414200 Rh2BG325700 Rh5BG001100 Rh6AG135500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	1 cut(s)	358
AfiI	CCNNNNNNNGG	4 cut(s)	14, 287, 346, 382
AgsI	TTSAA	1 cut(s)	392
AjnI	CCWGG	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	67
ApeKI	GCWGC	3 cut(s)	161, 212, 245
ArsI	GACNNNNNNTTYG	2 cut(s)	370, 402
AspLEI	GCGC	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	326
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	178, 229
BbvI	GCAGC	3 cut(s)	148, 199, 257
BccI	CCATC	1 cut(s)	100
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	3 cut(s)	156, 207, 296
BfoI	RGCGCY	1 cut(s)	53
BisI	GCNGC	3 cut(s)	162, 213, 246
BlsI	GCNGC	3 cut(s)	163, 214, 247
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	3 cut(s)	6, 302, 327
BmrFI	CCNGG	1 cut(s)	129
BpiI	GAAGAC	2 cut(s)	178, 229
BsaI	GGTCTC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 287, 346, 382
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	129
BseGI	GGATG	4 cut(s)	88, 92, 296, 355
BseLI	CCNNNNNNNGG	4 cut(s)	14, 287, 346, 382
BseMII	CTCAG	2 cut(s)	92, 372
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	3 cut(s)	148, 199, 257
BseYI	CCCAGC	2 cut(s)	8, 281
BshFI	GGCC	1 cut(s)	69
BshNI	GGYRCC	1 cut(s)	4
BslFI	GGGAC	2 cut(s)	12, 149
BslI	CCNNNNNNNGG	4 cut(s)	14, 287, 346, 382
BsmAI	GTCTC	1 cut(s)	110
BsmFI	GGGAC	2 cut(s)	12, 149
BsnI	GGCC	1 cut(s)	69
Bso31I	GGTCTC	1 cut(s)	110
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	1 cut(s)	358
BspANI	GGCC	1 cut(s)	69
BspCNI	CTCAG	2 cut(s)	91, 373
BspLI	GGNNCC	3 cut(s)	6, 302, 327
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	153
BstC8I	GCNNGC	2 cut(s)	42, 54
BstDEI	CTNAG	2 cut(s)	78, 381
BstF5I	GGATG	4 cut(s)	88, 92, 296, 355
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
BstV1I	GCAGC	3 cut(s)	148, 199, 257
BstV2I	GAAGAC	2 cut(s)	178, 229
BstXI	CCANNNNNNTGG	2 cut(s)	184, 235
BsuRI	GGCC	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	4 cut(s)	88, 92, 296, 355
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 149, 329
Cac8I	GCNNGC	2 cut(s)	42, 54
CfoI	GCGC	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	326
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviJI	RGCY	6 cut(s)	69, 143, 194, 248, 271, 303
CviKI_1	RGCY	6 cut(s)	69, 143, 194, 248, 271, 303
DdeI	CTNAG	2 cut(s)	78, 381
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	127
FaiI	YATR	1 cut(s)	263
FaqI	GGGAC	2 cut(s)	12, 149
Fnu4HI	GCNGC	3 cut(s)	162, 213, 246
FokI	GGATG	4 cut(s)	75, 79, 303, 362
Fsp4HI	GCNGC	3 cut(s)	162, 213, 246
FspBI	CTAG	3 cut(s)	156, 207, 296
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	162, 213, 246
GsaI	CCCAGC	2 cut(s)	12, 285
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	364
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	3 cut(s)	187, 238, 329
Hpy188I	TCNGA	2 cut(s)	81, 369
Hpy188III	TCNNGA	2 cut(s)	389, 416
Hpy8I	GTNNAC	3 cut(s)	187, 238, 329
HpyCH4III	ACNGT	1 cut(s)	153
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	2 cut(s)	78, 381
HspAI	GCGC	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	74
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	8 cut(s)	22, 66, 114, 141, 295, 317, 346, 401
Lsp1109I	GCAGC	3 cut(s)	148, 199, 257
MaeI	CTAG	3 cut(s)	156, 207, 296
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	3 cut(s)	30, 183, 234
MluCI	AATT	4 cut(s)	178, 229, 342, 370
MnlI	CCTC	3 cut(s)	94, 125, 376
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	277
NdeII	GATC	1 cut(s)	74
NlaIV	GGNNCC	3 cut(s)	6, 302, 327
NmuCI	GTSAC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	163, 214, 247
Psp6I	CCWGG	1 cut(s)	127
PspFI	CCCAGC	2 cut(s)	8, 281
PspGI	CCWGG	1 cut(s)	127
PspN4I	GGNNCC	3 cut(s)	6, 302, 327
PspPI	GGNCC	1 cut(s)	326
SatI	GCNGC	3 cut(s)	162, 213, 246
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	129
SinI	GGWCC	1 cut(s)	326
Sse9I	AATT	4 cut(s)	178, 229, 342, 370
SsiI	CCGC	1 cut(s)	358
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	3 cut(s)	156, 207, 296
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	153
TasI	AATT	4 cut(s)	178, 229, 342, 370
TfiI	GAWTC	1 cut(s)	364
TscAI	CASTG	3 cut(s)	123, 156, 336
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	3 cut(s)	161, 212, 245
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	2 cut(s)	85, 183
TspRI	CASTG	3 cut(s)	123, 156, 336
VpaK11BI	GGWCC	1 cut(s)	326
XspI	CTAG	3 cut(s)	156, 207, 296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.