Rh6AG135500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0020441
Physical Location & Seq
Reverse (-)
20576679 .. 20577005
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG135500.1

Sequence Viewer

Length: 327 bp
ATGGCACCCAGCAAAGGAAGAACCCGTCCCAATGTGAAGCGTGCGAGAGCGCCAGCGACAAGGCGTGGCCTACGATCTCAGAAAGCACATCCATCCGTAGAGGGTCTCACAAATGCAGTGGTAAATCCAGGAGGGGACAAAGCCACATCACTGTCTAGTGCTGCCAACGGAAGACCCAATTTGGTGGACAAAGCAGCCAAATCAGTGACTATGAACAAGCCAATATTGCCCAGCAAAGGATGTCTAGGGAGCCAATACTTTACGGTACTTTACCTCCACATTGCATGCAAATCTGGGAAGTGTGATATAATTGTTATTCATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.36

Weight (kDa)

10.63

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020441)

Species Orthologous Gene IDs
pyrus_communis pycom08g19570
rosa_samantha Rh1AG047400 Rh1AG414200 Rh2BG325700 Rh5BG001100 Rh6AG135500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 4
AfaI GTAC 1 cut(s) 267
AfiI CCNNNNNNNGG 2 cut(s) 14, 236
AjnI CCWGG 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 110
AoxI GGCC 1 cut(s) 67
ApeKI GCWGC 2 cut(s) 161, 194
AspLEI GCGC 1 cut(s) 52
BanI GGYRCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 178
BbvI GCAGC 2 cut(s) 148, 206
BccI CCATC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 110
BfaI CTAG 2 cut(s) 156, 245
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 2 cut(s) 162, 195
BlsI GCNGC 2 cut(s) 163, 196
Bme1390I CCNGG 1 cut(s) 129
BmiI GGNNCC 2 cut(s) 6, 251
BmrFI CCNGG 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 110
BsaXI ACNNNNNCTCC 2 cut(s) 258, 288
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 236
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 129
BseGI GGATG 3 cut(s) 88, 92, 245
BseLI CCNNNNNNNGG 2 cut(s) 14, 236
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 92
BseXI GCAGC 2 cut(s) 148, 206
BseYI CCCAGC 2 cut(s) 8, 230
BshFI GGCC 1 cut(s) 69
BshNI GGYRCC 1 cut(s) 4
BslFI GGGAC 2 cut(s) 12, 149
BslI CCNNNNNNNGG 2 cut(s) 14, 236
BsmAI GTCTC 1 cut(s) 110
BsmFI GGGAC 2 cut(s) 12, 149
BsnI GGCC 1 cut(s) 69
Bso31I GGTCTC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 74
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 91
BspLI GGNNCC 2 cut(s) 6, 251
BspT107I GGYRCC 1 cut(s) 4
BspTNI GGTCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 279
BssMI GATC 1 cut(s) 74
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 2 cut(s) 153, 265
BstC8I GCNNGC 3 cut(s) 42, 54, 286
BstDEI CTNAG 1 cut(s) 78
BstF5I GGATG 3 cut(s) 88, 92, 245
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 77
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 1 cut(s) 74
BstMWI GCNNNNNNNGC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 129
BstNSI RCATGY 1 cut(s) 288
BstSCI CCNGG 1 cut(s) 127
BstV1I GCAGC 2 cut(s) 148, 206
BstV2I GAAGAC 1 cut(s) 178
BstXI CCANNNNNNTGG 1 cut(s) 184
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 3 cut(s) 88, 92, 245
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 3 cut(s) 123, 149, 210
Cac8I GCNNGC 3 cut(s) 42, 54, 286
CfoI GCGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 99, 134
CviAII CATG 2 cut(s) 285, 320
CviJI RGCY 5 cut(s) 69, 143, 197, 220, 252
CviKI_1 RGCY 5 cut(s) 69, 143, 197, 220, 252
CviQI GTAC 1 cut(s) 266
DdeI CTNAG 1 cut(s) 78
DpnI GATC 1 cut(s) 76
DpnII GATC 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 110
EcoRII CCWGG 1 cut(s) 127
FaeI CATG 2 cut(s) 288, 323
FaiI YATR 4 cut(s) 212, 286, 308, 321
FaqI GGGAC 2 cut(s) 12, 149
FatI CATG 2 cut(s) 284, 319
Fnu4HI GCNGC 2 cut(s) 162, 195
FokI GGATG 3 cut(s) 75, 79, 252
Fsp4HI GCNGC 2 cut(s) 162, 195
FspBI CTAG 2 cut(s) 156, 245
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 162, 195
GsaI CCCAGC 2 cut(s) 12, 234
HaeII RGCGCY 1 cut(s) 53
HaeIII GGCC 1 cut(s) 69
HhaI GCGC 1 cut(s) 52
Hin1II CATG 2 cut(s) 288, 323
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 1 cut(s) 81
Hpy8I GTNNAC 1 cut(s) 187
HpyCH4III ACNGT 2 cut(s) 153, 265
HpyCH4V TGCA 3 cut(s) 116, 284, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 226
HpyF3I CTNAG 1 cut(s) 78
Hsp92II CATG 2 cut(s) 288, 323
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 22, 66, 114, 141, 244, 279
Lsp1109I GCAGC 2 cut(s) 148, 206
MaeI CTAG 2 cut(s) 156, 245
MaeIII GTNAC 1 cut(s) 205
MalI GATC 1 cut(s) 76
MboI GATC 1 cut(s) 74
MboII GAAGA 2 cut(s) 30, 183
MluCI AATT 2 cut(s) 178, 309
MnlI CCTC 3 cut(s) 94, 125, 284
MseI TTAA 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 129
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 1 cut(s) 226
NdeII GATC 1 cut(s) 74
NlaIII CATG 2 cut(s) 288, 323
NlaIV GGNNCC 2 cut(s) 6, 251
NmuCI GTSAC 1 cut(s) 205
NspI RCATGY 1 cut(s) 288
PaeI GCATGC 1 cut(s) 288
PfoI TCCNGGA 1 cut(s) 127
PkrI GCNGC 2 cut(s) 163, 196
Psp6I CCWGG 1 cut(s) 127
PspFI CCCAGC 2 cut(s) 8, 230
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 6, 251
RsaI GTAC 1 cut(s) 267
RsaNI GTAC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 325
SatI GCNGC 2 cut(s) 162, 195
Sau3AI GATC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 129
SetI ASST 1 cut(s) 276
SphI GCATGC 1 cut(s) 288
Sse9I AATT 2 cut(s) 178, 309
SspI AATATT 1 cut(s) 225
SspMI CTAG 2 cut(s) 156, 245
StyD4I CCNGG 1 cut(s) 127
TaaI ACNGT 2 cut(s) 153, 265
TasI AATT 2 cut(s) 178, 309
Tru1I TTAA 1 cut(s) 325
Tru9I TTAA 1 cut(s) 325
TscAI CASTG 3 cut(s) 123, 156, 210
TseFI GTSAC 1 cut(s) 205
TseI GCWGC 2 cut(s) 161, 194
Tsp45I GTSAC 1 cut(s) 205
TspDTI ATGAA 2 cut(s) 227, 308
TspGWI ACGGA 2 cut(s) 85, 183
TspRI CASTG 3 cut(s) 123, 156, 210
XceI RCATGY 1 cut(s) 288
XspI CTAG 2 cut(s) 156, 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.