pycom08g21720

START domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0016207
Physical Location & Seq
Forward (+)
21143464 .. 21144372
909 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 696 bp
ATGACCACTACCAGTCCAGCACCTTGCAGCAGCAGCAGCAGCACCACCACCACCCGTTCCTGGTCCATAAGTGAGGACTCGCTTAAAAGGTATGTGCAGTTTGCAAGCGAAAGCTGCATTCAAGAATTACTGTCTGCTTCTGACTCCAACAGACCCAACGACGGCTGGAAACCCCTCCTTACTCTTGGCAACGGAGTTGAGATCTCCAAACGCAGGTCTGGATCCTTTCACACCTTCCGCAGCCGCTGCCTCCTCACTTCTTTGTCACCCCAGCAATTCATTACCGTTGCAAACGCCATCGATGCTGCCAAGCAATGGGATCCTCATCTTGTAGAAGCAAGGTACATAAAAGATCTTGGAGATAACCTCAGCATCATCCGTCTCAGGTTTGGAGATCATTCAAAGCCCCTCTTTCGAAACAGAGAATTCGTAGTCTACGAGCGACGTGAAACCATGGAAGATGGCACACTGGTGGTAGCAGTTGCTTCACTTCCAAAGGAGATAGCTGCCGGATTGGAACCAAAGCAAAATAACGCCATCAGGGGGCTGCTGCTGCAATCAGGATGGGTTGTTGATAAGCTTCAAGGTCACTCCTGCATGGTTACCTATGTTGTTCAGGTTTTCTTGTCATTGTTGAATGAAAATGCAGTTAGATCCTGCCGGATGGATGCCGAGGTGCTTTGTCAATCGACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
START

Protein Analysis

232

Amino Acids

25.72

Weight (kDa)

8.23

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
START PF01852 86 - 207 4.8e-07 START domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016207)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49800 AT5G49800
fragaria_vesca FvH4_5g27180
malus_domestica MD08G1250400.v1.1
prunus_persica Prupe.1G587600_v2.0.a1
pyrus_communis pycom08g21720
rosa_chinensis RchiOBHm_Chr7g0218271
rosa_laevigata RLG00000002383
rosa_multiflora Rmu_sc0004956.1_g000009
rosa_roxburghii Rroxscaffold_3G00241140
rosa_rugosa Rorug07G0176000
rosa_samantha Rh7AG317700 Rh7BG309000 Rh7DG316600
rosa_wichuraiana Rw7G026970

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 315
AccI GTMKAC 1 cut(s) 435
AciI CCGC 2 cut(s) 238, 244
AclWI GGATC 5 cut(s) 216, 229, 314, 327, 648
AcsI RAATTY 1 cut(s) 425
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 5 cut(s) 60, 161, 213, 315, 543
AgsI TTSAA 4 cut(s) 122, 402, 584, 637
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 59
AleI CACNNNNGTG 1 cut(s) 470
AluBI AGCT 3 cut(s) 114, 506, 580
AluI AGCT 3 cut(s) 114, 506, 580
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 5 cut(s) 216, 229, 314, 327, 648
AlwNI CAGNNNCTG 1 cut(s) 246
ApoI RAATTY 1 cut(s) 425
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 258
AsuII TTCGAA 1 cut(s) 415
AvaII GGWCC 1 cut(s) 63
BamHI GGATCC 2 cut(s) 221, 319
BbvCI CCTCAGC 1 cut(s) 368
BccI CCATC 5 cut(s) 305, 455, 545, 558, 658
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 386
BfuAI ACCTGC 1 cut(s) 204
BglII AGATCT 2 cut(s) 201, 352
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 63
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 223, 321, 519
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 292, 381, 658
BplI GAGNNNNNCTC 2 cut(s) 351, 383
Bpu10I CCTNAGC 1 cut(s) 368
Bpu14I TTCGAA 1 cut(s) 415
Bsa29I ATCGAT 1 cut(s) 300
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 453, 672
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 161, 213, 315, 543
Bse1I ACTGG 2 cut(s) 12, 474
Bse3DI GCAATG 1 cut(s) 320
Bse8I GATNNNNATC 1 cut(s) 324
BseBI CCWGG 1 cut(s) 61
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 2 cut(s) 453, 672
BseGI GGATG 4 cut(s) 375, 569, 669, 673
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 5 cut(s) 60, 161, 213, 315, 543
BseMI GCAATG 1 cut(s) 320
BseMII CTCAG 2 cut(s) 382, 397
BseNI ACTGG 2 cut(s) 12, 474
BseRI GAGGAG 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 270
BsgI GTGCAG 1 cut(s) 116
BshVI ATCGAT 1 cut(s) 300
BsiSI CCGG 2 cut(s) 510, 661
BslI CCNNNNNNNGG 5 cut(s) 60, 161, 213, 315, 543
BsmAI GTCTC 1 cut(s) 386
BsmBI CGTCTC 1 cut(s) 386
BsmI GAATGC 1 cut(s) 117
Bsp119I TTCGAA 1 cut(s) 415
Bsp143I GATC 6 cut(s) 201, 221, 319, 352, 394, 653
Bsp19I CCATGG 1 cut(s) 453
BspACI CCGC 2 cut(s) 238, 244
BspCNI CTCAG 2 cut(s) 381, 396
BspDI ATCGAT 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 223, 321, 519
BspMI ACCTGC 1 cut(s) 204
BspPI GGATC 5 cut(s) 216, 229, 314, 327, 648
BspT104I TTCGAA 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 320
BsrI ACTGG 2 cut(s) 12, 474
BssECI CCNNGG 2 cut(s) 453, 672
BssMI GATC 6 cut(s) 201, 221, 319, 352, 394, 653
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 61
Bst4CI ACNGT 2 cut(s) 132, 286
BstAPI GCANNNNNTGC 1 cut(s) 246
BstBI TTCGAA 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 2 cut(s) 368, 383
BstDSI CCRYGG 1 cut(s) 453
BstEII GGTNACC 1 cut(s) 601
BstF5I GGATG 4 cut(s) 375, 569, 669, 673
BstKTI GATC 6 cut(s) 204, 224, 322, 355, 397, 656
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 6 cut(s) 201, 221, 319, 352, 394, 653
BstMWI GCNNNNNNNGC 7 cut(s) 33, 36, 39, 114, 246, 302, 553
BstNI CCWGG 1 cut(s) 61
BstPI GGTNACC 1 cut(s) 601
BstSCI CCNGG 1 cut(s) 59
BstX2I RGATCY 5 cut(s) 201, 221, 319, 352, 653
BstYI RGATCY 5 cut(s) 201, 221, 319, 352, 653
Bsu15I ATCGAT 1 cut(s) 300
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 1 cut(s) 453
BtrI CACGTC 1 cut(s) 446
BtsCI GGATG 4 cut(s) 375, 569, 669, 673
BtsIMutI CAGTG 1 cut(s) 467
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 106
CaiI CAGNNNCTG 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 63
ClaI ATCGAT 1 cut(s) 300
Csp6I GTAC 1 cut(s) 343
CviAII CATG 2 cut(s) 454, 598
CviJI RGCY 7 cut(s) 114, 165, 243, 406, 506, 547, 580
CviKI_1 RGCY 7 cut(s) 114, 165, 243, 406, 506, 547, 580
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 2 cut(s) 368, 383
DpnI GATC 6 cut(s) 203, 223, 321, 354, 396, 655
DpnII GATC 6 cut(s) 201, 221, 319, 352, 394, 653
Eco130I CCWWGG 1 cut(s) 453
Eco47I GGWCC 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 601
EcoO65I GGTNACC 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 453
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 2 cut(s) 457, 601
FaiI YATR 6 cut(s) 68, 93, 347, 455, 599, 609
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 2 cut(s) 453, 597
FblI GTMKAC 1 cut(s) 435
FokI GGATG 4 cut(s) 362, 576, 676, 680
GsaI CCCAGC 1 cut(s) 274
HapII CCGG 2 cut(s) 510, 661
Hin1II CATG 2 cut(s) 457, 601
HindIII AAGCTT 1 cut(s) 578
HinfI GANTC 2 cut(s) 77, 143
HpaII CCGG 2 cut(s) 510, 661
HphI GGTGA 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 436
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 3 cut(s) 122, 219, 561
Hpy8I GTNNAC 1 cut(s) 436
Hpy99I CGWCG 2 cut(s) 164, 447
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 2 cut(s) 132, 286
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 8 cut(s) 27, 97, 104, 117, 290, 556, 597, 647
HpyF10VI GCNNNNNNNGC 7 cut(s) 33, 36, 39, 114, 246, 302, 553
HpyF3I CTNAG 2 cut(s) 368, 383
HpySE526I ACGT 1 cut(s) 445
Hsp92II CATG 2 cut(s) 457, 601
Kzo9I GATC 6 cut(s) 201, 221, 319, 352, 394, 653
LweI GCATC 3 cut(s) 292, 381, 658
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 3 cut(s) 264, 587, 601
MalI GATC 6 cut(s) 203, 223, 321, 354, 396, 655
MboI GATC 6 cut(s) 201, 221, 319, 352, 394, 653
MboII GAAGA 1 cut(s) 470
MflI RGATCY 5 cut(s) 201, 221, 319, 352, 653
MluCI AATT 3 cut(s) 125, 275, 425
MlyI GAGTC 2 cut(s) 71, 137
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 8 cut(s) 67, 185, 260, 263, 333, 377, 419, 667
MseI TTAA 2 cut(s) 84, 694
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 246
MspI CCGG 2 cut(s) 510, 661
MspR9I CCNGG 1 cut(s) 61
Mva1269I GAATGC 1 cut(s) 117
MvaI CCWGG 1 cut(s) 61
MwoI GCNNNNNNNGC 7 cut(s) 33, 36, 39, 114, 246, 302, 553
NcoI CCATGG 1 cut(s) 453
NdeII GATC 6 cut(s) 201, 221, 319, 352, 394, 653
NlaIII CATG 2 cut(s) 457, 601
NlaIV GGNNCC 3 cut(s) 223, 321, 519
NmuCI GTSAC 2 cut(s) 264, 587
NspV TTCGAA 1 cut(s) 415
OliI CACNNNNGTG 1 cut(s) 470
PcsI WCGNNNNNNNCGW 1 cut(s) 435
PctI GAATGC 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 315
PleI GAGTC 2 cut(s) 71, 137
PpsI GAGTC 2 cut(s) 71, 137
Psp6I CCWGG 1 cut(s) 59
PspEI GGTNACC 1 cut(s) 601
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 223, 321, 519
PspPI GGNCC 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 246
PsuI RGATCY 5 cut(s) 201, 221, 319, 352, 653
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 470
SaqAI TTAA 2 cut(s) 84, 694
Sau3AI GATC 6 cut(s) 201, 221, 319, 352, 394, 653
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 2 cut(s) 71, 137
ScrFI CCNGG 1 cut(s) 61
SfaNI GCATC 3 cut(s) 292, 381, 658
SfuI TTCGAA 1 cut(s) 415
SinI GGWCC 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 470
Sse9I AATT 3 cut(s) 125, 275, 425
SsiI CCGC 2 cut(s) 238, 244
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 2 cut(s) 132, 286
TaiI ACGT 1 cut(s) 448
TaqI TCGA 3 cut(s) 300, 415, 689
TasI AATT 3 cut(s) 125, 275, 425
TauI GCSGC 1 cut(s) 246
Tru1I TTAA 2 cut(s) 84, 694
Tru9I TTAA 2 cut(s) 84, 694
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 264, 587
Tsp45I GTSAC 2 cut(s) 264, 587
TspDTI ATGAA 2 cut(s) 268, 654
TspGWI ACGGA 2 cut(s) 207, 368
TspRI CASTG 1 cut(s) 474
Van91I CCANNNNNTGG 1 cut(s) 315
VpaK11BI GGWCC 1 cut(s) 63
XapI RAATTY 1 cut(s) 425
XmiI GTMKAC 1 cut(s) 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.