pycom09g02630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018496
Physical Location & Seq
Forward (+)
1968383 .. 1968847
465 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGAAGTTCCTCTTGGAGTTGGGTTCGTGTTACCGTTCATCGTCGACGCGAACCCAAAATCATGTGACGAGATCAACCCATGAGAGAAGCTCCAAATCTGGAAGAGGTCATCAATGGAGGCCAGCTCTTGTTGCAATCTCAGAGGATGGGGTTGTTTCTGGTCATGAGGGTAACGTTCAATCTAAGAAGATGACATCAGCCAAAGGTCGACGGCCAAGGGCCAAGGCTCCAAGTTTCAGTTATACTACTAGTGATGATTTTCAGTACTACTCGAGGAGAAACGACGGGCCGACCATGGTACCTGCAGCGTTCTCAGCAACGCCGTTCATGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.39

Weight (kDa)

10.33

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018496)

Species Orthologous Gene IDs
malus_domestica MD09G1103100.v1.1
prunus_persica Prupe.3G222700_v2.0.a1
pyrus_communis pycom09g02630
rosa_laevigata RLG00000021219
rosa_roxburghii Rroxscaffold_2G00089770
rosa_rugosa Rorug02G0483500
rosa_samantha Rh2AG548800 Rh2BG562500 Rh2CG533100 Rh2DG571200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 310
Acc65I GGTACC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 298
AccI GTMKAC 2 cut(s) 44, 208
AccII CGCG 1 cut(s) 49
AclI AACGTT 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 212
AfaI GTAC 2 cut(s) 266, 300
AgsI TTSAA 1 cut(s) 179
AhlI ACTAGT 1 cut(s) 248
AjuI GAANNNNNNNTTGG 1 cut(s) 28
AluBI AGCT 2 cut(s) 90, 125
AluI AGCT 2 cut(s) 90, 125
Ama87I CYCGRG 1 cut(s) 271
AoxI GGCC 4 cut(s) 119, 212, 219, 287
ApeKI GCWGC 1 cut(s) 305
Asp718I GGTACC 1 cut(s) 298
AspS9I GGNCC 2 cut(s) 219, 287
AvaI CYCGRG 1 cut(s) 271
BaeI ACNNNNGTAYC 2 cut(s) 282, 315
BanI GGYRCC 1 cut(s) 298
BbvI GCAGC 1 cut(s) 317
BccI CCATC 1 cut(s) 140
BceAI ACGGC 2 cut(s) 227, 307
BcuI ACTAGT 1 cut(s) 248
BfaI CTAG 1 cut(s) 249
BfmI CTRYAG 1 cut(s) 303
BfuAI ACCTGC 1 cut(s) 310
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 266
BmeT110I CYCGRG 1 cut(s) 271
BmgT120I GGNCC 2 cut(s) 219, 287
BmiI GGNNCC 2 cut(s) 228, 300
BplI GAGNNNNNCTC 4 cut(s) 74, 106, 109, 141
BsaJI CCNNGG 3 cut(s) 215, 222, 294
BseDI CCNNGG 3 cut(s) 215, 222, 294
BseGI GGATG 1 cut(s) 151
BseMII CTCAG 2 cut(s) 153, 327
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 317
Bsh1236I CGCG 1 cut(s) 49
BshFI GGCC 4 cut(s) 121, 214, 221, 289
BshNI GGYRCC 1 cut(s) 298
BsiHKCI CYCGRG 1 cut(s) 271
BsnI GGCC 4 cut(s) 121, 214, 221, 289
BsoBI CYCGRG 1 cut(s) 271
Bsp143I GATC 1 cut(s) 71
Bsp19I CCATGG 1 cut(s) 294
BspANI GGCC 4 cut(s) 121, 214, 221, 289
BspCNI CTCAG 2 cut(s) 152, 326
BspFNI CGCG 1 cut(s) 49
BspHI TCATGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 228, 300
BspMAI CTGCAG 1 cut(s) 307
BspMI ACCTGC 1 cut(s) 310
BspT107I GGYRCC 1 cut(s) 298
BssECI CCNNGG 3 cut(s) 215, 222, 294
BssMI GATC 1 cut(s) 71
BssT1I CCWWGG 3 cut(s) 215, 222, 294
Bst4CI ACNGT 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 3 cut(s) 139, 183, 313
BstDSI CCRYGG 1 cut(s) 294
BstF5I GGATG 1 cut(s) 151
BstFNI CGCG 1 cut(s) 49
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstMWI GCNNNNNNNGC 2 cut(s) 131, 314
BstSFI CTRYAG 1 cut(s) 303
BstUI CGCG 1 cut(s) 49
BstV1I GCAGC 1 cut(s) 317
BsuRI GGCC 4 cut(s) 121, 214, 221, 289
BtgI CCRYGG 1 cut(s) 294
BtsCI GGATG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 310
Cac8I GCNNGC 1 cut(s) 123
CciI TCATGA 1 cut(s) 163
Cfr13I GGNCC 2 cut(s) 219, 287
CseI GACGC 1 cut(s) 55
Csp6I GTAC 2 cut(s) 265, 299
CviAII CATG 5 cut(s) 62, 80, 164, 295, 328
CviJI RGCY 8 cut(s) 90, 121, 125, 200, 214, 221, 227, 289
CviKI_1 RGCY 8 cut(s) 90, 121, 125, 200, 214, 221, 227, 289
CviQI GTAC 2 cut(s) 265, 299
DdeI CTNAG 3 cut(s) 139, 183, 313
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 212
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 3 cut(s) 215, 222, 294
Eco88I CYCGRG 1 cut(s) 271
EcoT14I CCWWGG 3 cut(s) 215, 222, 294
ErhI CCWWGG 3 cut(s) 215, 222, 294
FaeI CATG 5 cut(s) 65, 83, 167, 298, 331
FaiI YATR 6 cut(s) 63, 81, 165, 243, 296, 329
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 5 cut(s) 61, 79, 163, 294, 327
FblI GTMKAC 2 cut(s) 44, 208
Fnu4HI GCNGC 1 cut(s) 306
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 306
HaeIII GGCC 4 cut(s) 121, 214, 221, 289
HgaI GACGC 1 cut(s) 55
Hin1II CATG 5 cut(s) 65, 83, 167, 298, 331
HincII GTYRAC 2 cut(s) 45, 209
HindII GTYRAC 2 cut(s) 45, 209
Hpy166II GTNNAC 2 cut(s) 45, 209
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 99, 164
Hpy8I GTNNAC 2 cut(s) 45, 209
Hpy99I CGWCG 4 cut(s) 46, 49, 213, 287
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 134, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 314
HpyF3I CTNAG 3 cut(s) 139, 183, 313
HpySE526I ACGT 1 cut(s) 174
Hsp92II CATG 5 cut(s) 65, 83, 167, 298, 331
KpnI GGTACC 1 cut(s) 302
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 2 cut(s) 95, 232
LpnPI CCDG 4 cut(s) 84, 135, 144, 315
Lsp1109I GCAGC 1 cut(s) 317
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 3 cut(s) 29, 64, 170
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 2 cut(s) 114, 199
MnlI CCTC 6 cut(s) 20, 98, 111, 136, 160, 267
MvnI CGCG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 131, 314
NcoI CCATGG 1 cut(s) 294
NdeII GATC 1 cut(s) 71
NlaIII CATG 5 cut(s) 65, 83, 167, 298, 331
NlaIV GGNNCC 2 cut(s) 228, 300
NmuCI GTSAC 1 cut(s) 64
PaeR7I CTCGAG 1 cut(s) 271
PagI TCATGA 1 cut(s) 163
PkrI GCNGC 1 cut(s) 307
Psp1406I AACGTT 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 228, 300
PspPI GGNCC 2 cut(s) 219, 287
PspXI VCTCGAGB 1 cut(s) 271
PstI CTGCAG 1 cut(s) 307
RsaI GTAC 2 cut(s) 266, 300
RsaNI GTAC 2 cut(s) 265, 299
SalI GTCGAC 2 cut(s) 43, 207
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 2 cut(s) 219, 287
ScaI AGTACT 1 cut(s) 266
SetI ASST 6 cut(s) 92, 109, 127, 177, 208, 304
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 271
SgrDI CGTCGACG 1 cut(s) 43
SlaI CTCGAG 1 cut(s) 271
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SpeI ACTAGT 1 cut(s) 248
SspMI CTAG 1 cut(s) 249
StyI CCWWGG 3 cut(s) 215, 222, 294
TaaI ACNGT 1 cut(s) 35
TaiI ACGT 1 cut(s) 177
TaqI TCGA 3 cut(s) 44, 208, 272
TatI WGTACW 1 cut(s) 264
TseFI GTSAC 1 cut(s) 64
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 1 cut(s) 64
TspDTI ATGAA 3 cut(s) 17, 27, 316
XhoI CTCGAG 1 cut(s) 271
XmiI GTMKAC 2 cut(s) 44, 208
XspI CTAG 1 cut(s) 249
ZrmI AGTACT 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.