pycom09g05930

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0003220
Physical Location & Seq
Reverse (-)
4400853 .. 4401516
664 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05930.2

Sequence Viewer

Length: 372 bp
ATGTCAGTGATAATCTTTTCCCTCTCTCATTTGCAATCGGTTGGTTATATTGTAATAAACACTCTTCTAGATAAGCAAGTCAAAGAGCTCGAGCAGAAAGTGCAGCTGGCAGATACCAAAGTAACAGAAAGGGGTGATGGAGGCAGTGTAGCCGGACTGGAAGTGAAATCCAGGGACATTGGATCAACCATTTCAACTCCATCGAAAAGGAAGAGCAAGAAGAAGTCAGAAGCAACACCTGCTCAAACCTCATCATCTGCAAATATCCATACACATACAACTGCGGCTTCCCCAATGACAAGCGTTAAGTTCATCGTGGGAGTGGCTGTGGTGTCTGCGATCATCGGCCTCATTCTTGGAAAACGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.04

Weight (kDa)

9.87

Isoelectric Point (pI)

35.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 247
Acc36I ACCTGC 1 cut(s) 247
AciI CCGC 1 cut(s) 284
AclWI GGATC 1 cut(s) 190
AgsI TTSAA 1 cut(s) 195
AjnI CCWGG 1 cut(s) 170
AluBI AGCT 2 cut(s) 88, 106
AluI AGCT 2 cut(s) 88, 106
Alw21I GWGCWC 1 cut(s) 90
AlwI GGATC 1 cut(s) 190
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 89
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BanII GRGCYC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 1 cut(s) 115
BccI CCATC 2 cut(s) 131, 208
BciT130I CCWGG 1 cut(s) 172
BfaI CTAG 2 cut(s) 68, 370
BfuAI ACCTGC 1 cut(s) 247
BisI GCNGC 2 cut(s) 104, 285
BlsI GCNGC 2 cut(s) 105, 286
Bme1390I CCNGG 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 89
BmrFI CCNGG 1 cut(s) 172
BsaJI CCNNGG 1 cut(s) 171
BsaXI ACNNNNNCTCC 4 cut(s) 132, 162, 312, 342
Bse1I ACTGG 1 cut(s) 162
BseBI CCWGG 1 cut(s) 172
BseDI CCNNGG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 162
BseXI GCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 122
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 153
BslFI GGGAC 1 cut(s) 188
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 89
Bsp1286I GDGCHC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 182, 339
BspACI CCGC 1 cut(s) 284
BspANI GGCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 247
BspPI GGATC 1 cut(s) 190
BspQI GCTCTTC 1 cut(s) 206
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 2 cut(s) 182, 339
Bst2UI CCWGG 1 cut(s) 172
Bst6I CTCTTC 2 cut(s) 69, 206
BstAPI GCANNNNNTGC 2 cut(s) 100, 239
BstC8I GCNNGC 1 cut(s) 108
BstKTI GATC 2 cut(s) 185, 342
BstMBI GATC 2 cut(s) 182, 339
BstMWI GCNNNNNNNGC 2 cut(s) 100, 239
BstNI CCWGG 1 cut(s) 172
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 348
BtsI GCAGTG 1 cut(s) 151
BtsIMutI CAGTG 2 cut(s) 12, 151
BveI ACCTGC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 108
CviJI RGCY 6 cut(s) 88, 106, 152, 287, 326, 348
CviKI_1 RGCY 6 cut(s) 88, 106, 152, 287, 326, 348
DpnI GATC 2 cut(s) 184, 341
DpnII GATC 2 cut(s) 182, 339
Eam1104I CTCTTC 2 cut(s) 69, 206
EarI CTCTTC 2 cut(s) 69, 206
Ecl136II GAGCTC 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 90
Eco53kI GAGCTC 1 cut(s) 88
Eco88I CYCGRG 1 cut(s) 89
EcoICRI GAGCTC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 170
EcoT38I GRGCYC 1 cut(s) 90
FaiI YATR 3 cut(s) 48, 270, 276
FaqI GGGAC 1 cut(s) 188
Fnu4HI GCNGC 2 cut(s) 104, 285
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 2 cut(s) 104, 285
FspBI CTAG 2 cut(s) 68, 370
GluI GCNGC 2 cut(s) 104, 285
HaeIII GGCC 1 cut(s) 348
HapII CCGG 1 cut(s) 153
HpaII CCGG 1 cut(s) 153
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 34, 103, 260
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 239
Kzo9I GATC 2 cut(s) 182, 339
LguI GCTCTTC 1 cut(s) 206
LpnPI CCDG 6 cut(s) 92, 143, 157, 166, 184, 252
Lsp1109I GCAGC 1 cut(s) 115
MaeI CTAG 2 cut(s) 68, 370
MaeIII GTNAC 1 cut(s) 121
MalI GATC 2 cut(s) 184, 341
MboI GATC 2 cut(s) 182, 339
MboII GAAGA 3 cut(s) 56, 223, 232
MhlI GDGCHC 1 cut(s) 90
MnlI CCTC 4 cut(s) 32, 134, 259, 359
MseI TTAA 1 cut(s) 306
MspA1I CMGCKG 1 cut(s) 106
MspI CCGG 1 cut(s) 153
MspR9I CCNGG 1 cut(s) 172
MvaI CCWGG 1 cut(s) 172
MwoI GCNNNNNNNGC 2 cut(s) 100, 239
NdeII GATC 2 cut(s) 182, 339
PaeR7I CTCGAG 1 cut(s) 89
PaqCI CACCTGC 1 cut(s) 247
PciSI GCTCTTC 1 cut(s) 206
PkrI GCNGC 2 cut(s) 105, 286
Psp124BI GAGCTC 1 cut(s) 90
Psp6I CCWGG 1 cut(s) 170
PspGI CCWGG 1 cut(s) 170
PspXI VCTCGAGB 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 106
SacI GAGCTC 1 cut(s) 90
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 2 cut(s) 104, 285
Sau3AI GATC 2 cut(s) 182, 339
ScrFI CCNGG 1 cut(s) 172
SduI GDGCHC 1 cut(s) 90
SetI ASST 4 cut(s) 90, 108, 241, 251
Sfr274I CTCGAG 1 cut(s) 89
SlaI CTCGAG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SsiI CCGC 1 cut(s) 284
SspMI CTAG 2 cut(s) 68, 370
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 170
TaqI TCGA 2 cut(s) 90, 203
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 12, 151
TseI GCWGC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 301
TspRI CASTG 2 cut(s) 12, 151
XbaI TCTAGA 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 89
XspI CTAG 2 cut(s) 68, 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.