Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003220

Physical Location & Seq

Genomic Coordinates Reverse (-)

54082691 .. 54083598

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0420900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGGAGCTCTCACTCTCTCCTCTCTGCGGCGGCTAACCCTAGGGTTTTGCCGTCCGATTTCCTTCGCCTGCGACGCTGGCGTTCGTGGGCTCTGGCTGGCGAGCCCTGTGGTTTCGTGGATCTCCCCTTTTCAACCTTCTGGTTGCTGCACCATACTCTCGTCGGCTTGGCGACGAGATTTACCCCCTTCGGGTTTTGCCCGTGCTGGTGCTTGTCTCTGTCGCAGCGATGGTGATGGGCGGCGCCGTGGTCTGGTGGACCCGAACCAGACATGGGATCCGGGTTCTAGCAAGTGGTGGCTGGGTCTGATCCGGTCTATGGCGGCGGCAGTGCGTTGGGTTGTATGGCCTCATGGTGTTCCTCGATCGGTTCCAAGATCGGCGATCTCCGTGGGCTGGTGGTGGCTCCGAGTTCTAGGAAGCGACAATCACCCGGGGAGGACGAAAGCCGCGGCGGGTGATGGAGATGGTGTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

17.2

Weight (kDa)

10.91

Isoelectric Point (pI)

71.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320
fragaria_vesca	FvH4_6g39571 FvH4_6g39571 FvH4_6g39571 FvH4_6g39571
malus_domestica	MD09G1138500.v1.1 MD17G1128600.v1.1
prunus_persica	Prupe.3G186800_v2.0.a1 Prupe.3G186800_v2.0.a1 Prupe.3G186800_v2.0.a1
pyrus_communis	pycom09g05930 pycom09g05950 pycom17g12070
rosa_chinensis	RchiOBHm_Chr2g0153621
rosa_laevigata	RLG00000020715
rosa_multiflora	Rmu_sc0005776.1_g000004 Rmu_ssc0000024.1_g000011
rosa_roxburghii	Rroxscaffold_2G00094860
rosa_rugosa	Rorug02G0420900 Rorug02G0441000
rosa_samantha	Rh2AG504000 Rh2BG514700 Rh2CG489700 Rh2DG526500 Rh3AG044900 Rh3BG047200 Rh3CG045700 Rh3DG046100
rosa_wichuraiana	Rw2G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	243
AccII	CGCG	1 cut(s)	452
AciI	CCGC	8 cut(s)	28, 31, 241, 323, 326, 450, 452, 455
AclWI	GGATC	4 cut(s)	128, 272, 285, 304
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	6 cut(s)	27, 191, 253, 274, 319, 396
AgsI	TTSAA	1 cut(s)	134
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	4 cut(s)	128, 272, 285, 304
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	147, 225
AspA2I	CCTAGG	1 cut(s)	40
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	1 cut(s)	259
AsuC2I	CCSGG	3 cut(s)	282, 434, 435
AsuHPI	GGTGA	3 cut(s)	245, 422, 470
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	259
AvrII	CCTAGG	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	243
BanII	GRGCYC	3 cut(s)	10, 93, 107
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	134, 237
BccI	CCATC	4 cut(s)	224, 230, 455, 461
BceAI	ACGGC	2 cut(s)	36, 231
BcnI	CCSGG	3 cut(s)	282, 434, 435
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	41, 288, 416
BfoI	RGCGCY	1 cut(s)	247
BisI	GCNGC	9 cut(s)	29, 32, 148, 226, 242, 324, 327, 450, 453
BlnI	CCTAGG	1 cut(s)	40
BlsI	GCNGC	9 cut(s)	30, 33, 149, 227, 243, 325, 328, 451, 454
Bme1390I	CCNGG	3 cut(s)	282, 434, 435
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	5 cut(s)	245, 261, 279, 372, 407
BmrFI	CCNGG	3 cut(s)	282, 434, 435
BpuMI	CCSGG	3 cut(s)	282, 434, 435
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	6 cut(s)	40, 247, 390, 433, 434, 450
BsaWI	WCCGGW	1 cut(s)	312
BsaXI	ACNNNNNCTCC	1 cut(s)	456
Bsc4I	CCNNNNNNNGG	6 cut(s)	27, 191, 253, 274, 319, 396
BseDI	CCNNGG	6 cut(s)	40, 247, 390, 433, 434, 450
BseLI	CCNNNNNNNGG	6 cut(s)	27, 191, 253, 274, 319, 396
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	134, 237
BseYI	CCCAGC	1 cut(s)	301
BsgI	GTGCAG	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	452
Bsh1285I	CGRYCG	1 cut(s)	368
BshFI	GGCC	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	243
BsiEI	CGRYCG	1 cut(s)	368
BsiHKAI	GWGCWC	1 cut(s)	10
BsiHKCI	CYCGRG	1 cut(s)	433
BsiSI	CCGG	3 cut(s)	281, 313, 434
BslI	CCNNNNNNNGG	6 cut(s)	27, 191, 253, 274, 319, 396
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	349
BsoBI	CYCGRG	1 cut(s)	433
Bsp1286I	GDGCHC	3 cut(s)	10, 93, 107
Bsp143I	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
BspACI	CCGC	8 cut(s)	28, 31, 241, 323, 326, 450, 452, 455
BspANI	GGCC	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	452
BspLI	GGNNCC	5 cut(s)	245, 261, 279, 372, 407
BspPI	GGATC	4 cut(s)	128, 272, 285, 304
BspT107I	GGYRCC	1 cut(s)	243
BssECI	CCNNGG	6 cut(s)	40, 247, 390, 433, 434, 450
BssMI	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	4 cut(s)	70, 79, 99, 103
BstDSI	CCRYGG	3 cut(s)	247, 390, 450
BstFNI	CGCG	1 cut(s)	452
BstH2I	RGCGCY	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	6 cut(s)	123, 280, 312, 368, 380, 387
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
BstMCI	CGRYCG	1 cut(s)	368
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 78
BstSCI	CCNGG	3 cut(s)	280, 432, 433
BstUI	CGCG	1 cut(s)	452
BstV1I	GCAGC	2 cut(s)	134, 237
BstX2I	RGATCY	2 cut(s)	120, 277
BstYI	RGATCY	2 cut(s)	120, 277
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	3 cut(s)	247, 390, 450
BtgZI	GCGATG	1 cut(s)	243
BtsI	GCAGTG	1 cut(s)	336
BtsIMutI	CAGTG	1 cut(s)	336
Cac8I	GCNNGC	4 cut(s)	70, 79, 99, 103
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	1 cut(s)	259
Cfr42I	CCGCGG	1 cut(s)	453
Cfr9I	CCCGGG	1 cut(s)	433
CseI	GACGC	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	2 cut(s)	273, 353
CviQI	GTAC	1 cut(s)	473
DinI	GGCGCC	1 cut(s)	245
DpnI	GATC	6 cut(s)	122, 279, 311, 367, 379, 386
DpnII	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	40
Eco24I	GRGCYC	3 cut(s)	10, 93, 107
Eco47I	GGWCC	1 cut(s)	259
Eco53kI	GAGCTC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	40
EcoT38I	GRGCYC	3 cut(s)	10, 93, 107
EgeI	GGCGCC	1 cut(s)	245
EheI	GGCGCC	1 cut(s)	245
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	2 cut(s)	276, 356
FaiI	YATR	6 cut(s)	155, 274, 320, 346, 354, 478
FatI	CATG	2 cut(s)	272, 352
FauI	CCCGC	1 cut(s)	448
Fnu4HI	GCNGC	9 cut(s)	29, 32, 148, 226, 242, 324, 327, 450, 453
FriOI	GRGCYC	3 cut(s)	10, 93, 107
Fsp4HI	GCNGC	9 cut(s)	29, 32, 148, 226, 242, 324, 327, 450, 453
FspBI	CTAG	3 cut(s)	41, 288, 416
GlaI	GCGC	1 cut(s)	245
GluI	GCNGC	9 cut(s)	29, 32, 148, 226, 242, 324, 327, 450, 453
GsaI	CCCAGC	1 cut(s)	305
HaeII	RGCGCY	1 cut(s)	247
HaeIII	GGCC	1 cut(s)	349
HapII	CCGG	3 cut(s)	281, 313, 434
HgaI	GACGC	1 cut(s)	83
HhaI	GCGC	1 cut(s)	246
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	2 cut(s)	276, 356
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HpaII	CCGG	3 cut(s)	281, 313, 434
HphI	GGTGA	3 cut(s)	245, 422, 470
Hpy166II	GTNNAC	2 cut(s)	259, 473
Hpy188I	TCNGA	3 cut(s)	57, 309, 410
Hpy8I	GTNNAC	2 cut(s)	259, 473
Hpy99I	CGWCG	3 cut(s)	77, 166, 177
HpyAV	CCTTC	3 cut(s)	73, 147, 198
HpyCH4V	TGCA	1 cut(s)	150
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 78
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	2 cut(s)	276, 356
HspAI	GCGC	1 cut(s)	244
KasI	GGCGCC	1 cut(s)	243
KspI	CCGCGG	1 cut(s)	453
Kzo9I	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
LmnI	GCTCC	2 cut(s)	5, 411
Lsp1109I	GCAGC	2 cut(s)	134, 237
MaeI	CTAG	3 cut(s)	41, 288, 416
MalI	GATC	6 cut(s)	122, 279, 311, 367, 379, 386
MboI	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
MflI	RGATCY	2 cut(s)	120, 277
MhlI	GDGCHC	3 cut(s)	10, 93, 107
Mly113I	GGCGCC	1 cut(s)	244
MnlI	CCTC	4 cut(s)	31, 360, 372, 432
MspA1I	CMGCKG	1 cut(s)	452
MspI	CCGG	3 cut(s)	281, 313, 434
MspR9I	CCNGG	3 cut(s)	282, 434, 435
MvnI	CGCG	1 cut(s)	452
MwoI	GCNNNNNNNGC	2 cut(s)	74, 78
NarI	GGCGCC	1 cut(s)	244
NciI	CCSGG	3 cut(s)	282, 434, 435
NdeII	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
NlaIII	CATG	2 cut(s)	276, 356
NlaIV	GGNNCC	5 cut(s)	245, 261, 279, 372, 407
PkrI	GCNGC	9 cut(s)	30, 33, 149, 227, 243, 325, 328, 451, 454
Ple19I	CGATCG	1 cut(s)	368
PluTI	GGCGCC	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	10
PspFI	CCCAGC	1 cut(s)	301
PspN4I	GGNNCC	5 cut(s)	245, 261, 279, 372, 407
PspPI	GGNCC	1 cut(s)	259
PsuI	RGATCY	2 cut(s)	120, 277
PvuI	CGATCG	1 cut(s)	368
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
SacI	GAGCTC	1 cut(s)	10
SacII	CCGCGG	1 cut(s)	453
SatI	GCNGC	9 cut(s)	29, 32, 148, 226, 242, 324, 327, 450, 453
Sau3AI	GATC	6 cut(s)	120, 277, 309, 365, 377, 384
Sau96I	GGNCC	1 cut(s)	259
ScrFI	CCNGG	3 cut(s)	282, 434, 435
SduI	GDGCHC	3 cut(s)	10, 93, 107
SetI	ASST	2 cut(s)	10, 139
SfoI	GGCGCC	1 cut(s)	245
Sfr303I	CCGCGG	1 cut(s)	453
SgrBI	CCGCGG	1 cut(s)	453
SinI	GGWCC	1 cut(s)	259
SmaI	CCCGGG	1 cut(s)	435
SsiI	CCGC	8 cut(s)	28, 31, 241, 323, 326, 450, 452, 455
SspDI	GGCGCC	1 cut(s)	243
SspMI	CTAG	3 cut(s)	41, 288, 416
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	3 cut(s)	280, 432, 433
StyI	CCWWGG	1 cut(s)	40
TaqI	TCGA	1 cut(s)	364
TatI	WGTACW	1 cut(s)	472
TauI	GCSGC	7 cut(s)	31, 34, 244, 326, 329, 452, 455
TscAI	CASTG	1 cut(s)	336
TseI	GCWGC	2 cut(s)	147, 225
TspGWI	ACGGA	1 cut(s)	379
TspMI	CCCGGG	1 cut(s)	433
TspRI	CASTG	1 cut(s)	336
VpaK11BI	GGWCC	1 cut(s)	259
XmaI	CCCGGG	1 cut(s)	433
XmaJI	CCTAGG	1 cut(s)	40
XspI	CTAG	3 cut(s)	41, 288, 416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.