Rh3BG047200

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003220
Physical Location & Seq
Forward (+)
3039771 .. 3041355
1585 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG047200.1

Sequence Viewer

Length: 279 bp
ATGAATAGTAAAATGTCTAGAACACAAGAGAGAATCAAACTTCGGTTGGAATCATTCGATGGTCTAAGCCTTGAGCTCGAAAGCTCGAGAAAGAGGATACAGGAGCTGGAGCAAGAGCTGCAGAGTTCTGTAGGTGACGTGCAGAAGTTTGAGGAGCTGTACAAGCAAAGTGGTTCGCACGCCGAGTTTGAGACAAAGATGGCCTTAGAGTTCGAGAAGCTGCTTGAAGTGGCGAAAGTGAGTGCTAAAGAGATGGAAGAGCAGATGGGTGCTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

10.66

Weight (kDa)

4.98

Isoelectric Point (pI)

69.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 227
AjiI CACGTC 1 cut(s) 139
AluBI AGCT 6 cut(s) 76, 84, 106, 118, 157, 220
AluI AGCT 6 cut(s) 76, 84, 106, 118, 157, 220
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 106
Ama87I CYCGRG 1 cut(s) 85
AoxI GGCC 1 cut(s) 201
ApeKI GCWGC 2 cut(s) 118, 220
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 1 cut(s) 85
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BbvI GCAGC 2 cut(s) 105, 207
BccI CCATC 4 cut(s) 53, 193, 247, 259
BciVI GTATCC 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 1 cut(s) 18
BfmI CTRYAG 2 cut(s) 119, 129
BfuI GTATCC 1 cut(s) 90
BisI GCNGC 2 cut(s) 119, 221
BlsI GCNGC 2 cut(s) 120, 222
BmeT110I CYCGRG 1 cut(s) 85
BmgBI CACGTC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 92
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 2 cut(s) 105, 207
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 78
BsiHKCI CYCGRG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 185
BsnI GGCC 1 cut(s) 203
BsoBI CYCGRG 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 78
Bsp1407I TGTACA 1 cut(s) 159
BspANI GGCC 1 cut(s) 203
BspMAI CTGCAG 1 cut(s) 123
BspQI GCTCTTC 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 159
Bst6I CTCTTC 1 cut(s) 252
BstAPI GCANNNNNTGC 1 cut(s) 118
BstAUI TGTACA 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 2 cut(s) 65, 205
BstMAI GTCTC 1 cut(s) 185
BstMWI GCNNNNNNNGC 2 cut(s) 118, 163
BstSFI CTRYAG 2 cut(s) 119, 129
BstV1I GCAGC 2 cut(s) 105, 207
BsuI GTATCC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 203
BtrI CACGTC 1 cut(s) 139
Cac8I GCNNGC 1 cut(s) 180
CaiI CAGNNNCTG 1 cut(s) 106
Csp6I GTAC 1 cut(s) 160
CspCI CAANNNNNGTGG 2 cut(s) 151, 186
CviJI RGCY 8 cut(s) 69, 76, 84, 106, 118, 157, 203, 220
CviKI_1 RGCY 8 cut(s) 69, 76, 84, 106, 118, 157, 203, 220
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 65, 205
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco53kI GAGCTC 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 85
EcoICRI GAGCTC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 78
FalI AAGNNNNNCTT 2 cut(s) 188, 220
Fnu4HI GCNGC 2 cut(s) 119, 221
FriOI GRGCYC 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 119, 221
FspBI CTAG 1 cut(s) 18
GluI GCNGC 2 cut(s) 119, 221
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 203
HinfI GANTC 2 cut(s) 33, 50
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 3 cut(s) 18, 87, 214
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 121, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 118, 163
HpyF3I CTNAG 2 cut(s) 65, 205
HpySE526I ACGT 1 cut(s) 138
LguI GCTCTTC 1 cut(s) 252
LmnI GCTCC 3 cut(s) 103, 109, 154
LpnPI CCDG 2 cut(s) 86, 92
Lsp1109I GCAGC 2 cut(s) 105, 207
MaeI CTAG 1 cut(s) 18
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 134
MboII GAAGA 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 2 cut(s) 87, 145
MseI TTAA 1 cut(s) 277
MwoI GCNNNNNNNGC 2 cut(s) 118, 163
NmeAIII GCCGAG 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 134
PaeR7I CTCGAG 1 cut(s) 85
PciSI GCTCTTC 1 cut(s) 252
PfeI GAWTC 2 cut(s) 33, 50
PkrI GCNGC 2 cut(s) 120, 222
Psp124BI GAGCTC 1 cut(s) 78
PstI CTGCAG 1 cut(s) 123
PstNI CAGNNNCTG 1 cut(s) 106
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SacI GAGCTC 1 cut(s) 78
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 2 cut(s) 119, 221
SduI GDGCHC 1 cut(s) 78
SetI ASST 8 cut(s) 78, 86, 108, 120, 136, 141, 159, 222
SfcI CTRYAG 2 cut(s) 119, 129
Sfr274I CTCGAG 1 cut(s) 85
SlaI CTCGAG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 71, 85
SmoI CTYRAG 2 cut(s) 71, 85
SspMI CTAG 1 cut(s) 18
SstI GAGCTC 1 cut(s) 78
TaiI ACGT 1 cut(s) 141
TaqI TCGA 4 cut(s) 57, 78, 86, 213
TatI WGTACW 1 cut(s) 159
TfiI GAWTC 2 cut(s) 33, 50
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseFI GTSAC 1 cut(s) 134
TseI GCWGC 2 cut(s) 118, 220
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 17
XbaI TCTAGA 1 cut(s) 17
XhoI CTCGAG 1 cut(s) 85
XspI CTAG 1 cut(s) 18
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.