Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000024.1

Orthogroup ID

OG0003220

Physical Location & Seq

Genomic Coordinates Reverse (-)

55491 .. 56806

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000024.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atggatgaaacacaagtgagtgcagatatcccagtgaaggctgttgaagaagctgagactaatgaaaaggtgtcaaatggagacttcctgccgattggaaaagaaggaaagaaagaagatgatgaagctaatttcgatggagagttcattaaagttgagaaggaatcactagctgaaaagacattggcggaggaggacagcaagtcatctgttattgagagaagcacaagcaattcaagcagggagttactagaagcgcgggagaagacaggtgaacttgagctagagattgaaagattggctggtgtgttgaagcaatcggagtcagagaattccgagctgaagaatgaggtcttacttacaaaggagaagctcgaagaaattggaaagaagaacgaggagctggaactcagtcacaagaaattgcaagagcagatcactgaagctgaggagaagtacatttcacaactcagtgttttgcaagaggcattgcaagctcaagaagaaaagcacaaggatcttattggggtgaaggaatcattcgatggagcctcttaccgtccatacatcatagatgacgcttatcagttagataacgcctgcaaaattcaaagagtcagatcacagcctggacttcttcaccatgacaattccagaatactactacccatgaagaaaaaacgggtttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.0

Weight (kDa)

4.8

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003220)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320 AT1G05320
fragaria_vesca	FvH4_6g39571 FvH4_6g39571 FvH4_6g39571 FvH4_6g39571
malus_domestica	MD09G1138500.v1.1 MD17G1128600.v1.1
prunus_persica	Prupe.3G186800_v2.0.a1 Prupe.3G186800_v2.0.a1 Prupe.3G186800_v2.0.a1
pyrus_communis	pycom09g05930 pycom09g05950 pycom17g12070
rosa_chinensis	RchiOBHm_Chr2g0153621
rosa_laevigata	RLG00000020715
rosa_multiflora	Rmu_sc0005776.1_g000004 Rmu_ssc0000024.1_g000011
rosa_roxburghii	Rroxscaffold_2G00094860
rosa_rugosa	Rorug02G0420900 Rorug02G0441000
rosa_samantha	Rh2AG504000 Rh2BG514700 Rh2CG489700 Rh2DG526500 Rh3AG044900 Rh3BG047200 Rh3CG045700 Rh3DG046100
rosa_wichuraiana	Rw2G041390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	259
AciI	CCGC	2 cut(s)	188, 259
AclWI	GGATC	1 cut(s)	525
AcsI	RAATTY	2 cut(s)	331, 606
AcuI	CTGAAG	2 cut(s)	362, 462
AfaI	GTAC	1 cut(s)	458
AfiI	CCNNNNNNNGG	1 cut(s)	37
AgsI	TTSAA	5 cut(s)	47, 237, 293, 313, 611
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	1 cut(s)	628
AluBI	AGCT	9 cut(s)	53, 128, 173, 283, 340, 373, 403, 446, 497
AluI	AGCT	9 cut(s)	53, 128, 173, 283, 340, 373, 403, 446, 497
Alw26I	GTCTC	2 cut(s)	50, 75
AlwI	GGATC	1 cut(s)	525
ApoI	RAATTY	2 cut(s)	331, 606
AspLEI	GCGC	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	284, 541, 632
BbsI	GAAGAC	1 cut(s)	272
BbvCI	CCTCAGC	1 cut(s)	447
BccI	CCATC	2 cut(s)	131, 539
BciT130I	CCWGG	1 cut(s)	630
BcoDI	GTCTC	2 cut(s)	50, 75
BfaI	CTAG	3 cut(s)	170, 251, 284
Bme1390I	CCNGG	1 cut(s)	630
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	550
BmrFI	CCNGG	1 cut(s)	630
BmrI	ACTGGG	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	2 cut(s)	299, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	1 cut(s)	32
Bse3DI	GCAATG	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	1 cut(s)	488
BseMII	CTCAG	4 cut(s)	45, 424, 438, 484
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	3 cut(s)	206, 413, 464
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	50, 75
Bsp143I	GATC	3 cut(s)	435, 517, 620
BspACI	CCGC	2 cut(s)	188, 259
BspCNI	CTCAG	4 cut(s)	46, 423, 439, 483
BspFNI	CGCG	1 cut(s)	259
BspLI	GGNNCC	1 cut(s)	550
BspPI	GGATC	1 cut(s)	525
BsrDI	GCAATG	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	3 cut(s)	435, 517, 620
Bst2UI	CCWGG	1 cut(s)	630
Bst4CI	ACNGT	1 cut(s)	560
BstC8I	GCNNGC	2 cut(s)	495, 601
BstDEI	CTNAG	4 cut(s)	54, 410, 447, 470
BstF5I	GGATG	1 cut(s)	10
BstFNI	CGCG	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	3 cut(s)	438, 520, 623
BstMAI	GTCTC	2 cut(s)	50, 75
BstMBI	GATC	3 cut(s)	435, 517, 620
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 494
BstNI	CCWGG	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	628
BstUI	CGCG	1 cut(s)	259
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	3 cut(s)	39, 438, 478
Cac8I	GCNNGC	2 cut(s)	495, 601
CfoI	GCGC	1 cut(s)	259
CseI	GACGC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	457
CviAII	CATG	2 cut(s)	644, 670
CviQI	GTAC	1 cut(s)	457
DdeI	CTNAG	4 cut(s)	54, 410, 447, 470
DpnI	GATC	3 cut(s)	437, 519, 622
DpnII	GATC	3 cut(s)	435, 517, 620
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EciI	GGCGGA	1 cut(s)	203
Eco32I	GATATC	1 cut(s)	28
Eco57I	CTGAAG	2 cut(s)	362, 462
EcoRI	GAATTC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	628
EcoRV	GATATC	1 cut(s)	28
FaeI	CATG	2 cut(s)	647, 673
FaiI	YATR	4 cut(s)	565, 572, 645, 671
FatI	CATG	2 cut(s)	643, 669
FauI	CCCGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	17
FspBI	CTAG	3 cut(s)	170, 251, 284
GlaI	GCGC	1 cut(s)	258
HgaI	GACGC	1 cut(s)	587
HhaI	GCGC	1 cut(s)	259
Hin1II	CATG	2 cut(s)	647, 673
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HinfI	GANTC	4 cut(s)	164, 323, 536, 615
HphI	GGTGA	3 cut(s)	284, 541, 632
Hpy166II	GTNNAC	1 cut(s)	275
Hpy188I	TCNGA	4 cut(s)	322, 328, 337, 620
Hpy188III	TCNNGA	2 cut(s)	500, 654
Hpy8I	GTNNAC	1 cut(s)	275
HpyAV	CCTTC	4 cut(s)	31, 98, 154, 526
HpyCH4III	ACNGT	1 cut(s)	560
HpyCH4V	TGCA	5 cut(s)	23, 427, 481, 493, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 494
HpyF3I	CTNAG	4 cut(s)	54, 410, 447, 470
Hsp92II	CATG	2 cut(s)	647, 673
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	3 cut(s)	435, 517, 620
LmnI	GCTCC	2 cut(s)	400, 548
MaeI	CTAG	3 cut(s)	170, 251, 284
MaeIII	GTNAC	2 cut(s)	246, 413
MalI	GATC	3 cut(s)	437, 519, 622
MboI	GATC	3 cut(s)	435, 517, 620
MboII	GAAGA	9 cut(s)	59, 128, 277, 355, 389, 403, 515, 629, 685
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	7 cut(s)	130, 232, 331, 381, 422, 606, 649
MlyI	GAGTC	2 cut(s)	332, 624
MnlI	CCTC	7 cut(s)	184, 187, 343, 391, 442, 478, 562
MseI	TTAA	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	630
MvnI	CGCG	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	237, 494
NdeII	GATC	3 cut(s)	435, 517, 620
NlaIII	CATG	2 cut(s)	647, 673
NlaIV	GGNNCC	1 cut(s)	550
NmuCI	GTSAC	1 cut(s)	413
PfeI	GAWTC	2 cut(s)	164, 536
PleI	GAGTC	2 cut(s)	331, 623
PpsI	GAGTC	2 cut(s)	331, 623
Psp6I	CCWGG	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	628
PspN4I	GGNNCC	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	458
RsaNI	GTAC	1 cut(s)	457
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	3 cut(s)	435, 517, 620
SchI	GAGTC	2 cut(s)	332, 624
ScrFI	CCNGG	1 cut(s)	630
SmlI	CTYRAG	2 cut(s)	278, 498
SmoI	CTYRAG	2 cut(s)	278, 498
Sse9I	AATT	7 cut(s)	130, 232, 331, 381, 422, 606, 649
SsiI	CCGC	2 cut(s)	188, 259
SspMI	CTAG	3 cut(s)	170, 251, 284
StyD4I	CCNGG	1 cut(s)	628
TaaI	ACNGT	1 cut(s)	560
TaqI	TCGA	3 cut(s)	135, 375, 543
TasI	AATT	7 cut(s)	130, 232, 331, 381, 422, 606, 649
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	164, 536
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	3 cut(s)	39, 445, 478
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	5 cut(s)	21, 78, 136, 138, 686
TspRI	CASTG	3 cut(s)	39, 445, 478
XapI	RAATTY	2 cut(s)	331, 606
XspI	CTAG	3 cut(s)	170, 251, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.