Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0009297

Physical Location & Seq

Genomic Coordinates Forward (+)

7043942 .. 7047705

Gene Structure 3764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08890.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGTGGAGACTTGGAGTTGGGTTTTGCTGGTTTTCTGCATCTGCATTCTGGGGTGGAGTCCAAGCTCCATCAATGCTGCCACAGATCCAACAGATGTTAGTGCTCTGAAGGTCTTGTATGGTAGCTTAAATTCCCCACCTCAGCTAACCCAATGGAGTCAAAATGGCGATGATCCATGTGGCCAGTCGTGGAAAGGTGTTAAGTGCTCGGGCTCACGAGTAACAGAAATTGATTTATCAGGTCTTCAACTTTCTGGGACACTAGGGTATCAGCTTCAGAGTTTGACAGCACTAACTAACCTAGACATGAGCAATAATAATCTTGCAGGCAGTATACCTTATTCACTTCCTCCGAACATGACACGATTAAACCTTGGTCATAATAACTTCAATCAAGAGATCCCCTATTCCATCTCTATGCTAACGACTCTTAAATACCTGAACATAAGTCACAATCAGCTTCAGAACCAGTTGAATGACATTTTTGGAAAGCTTTCTTCTCTATCCATCTTGGATCTATCTTTCAATTCTCTGTCAGGCAACCTTCCTGAGAGTTTTGGCTCCCTCTCAAGTATGAAAACAATGTTCTTGCAGAATAACCAGTTAACAGGGACTATTGACGTCCTTGCCAATCTCCCCCTTGATAATCTGAATATTGAAAATAACCGTTTCACCGGCTGGATTCCAGAGCAGTTGAAAAACATTAATCTGGAGAAGGATGGAAACATGTGGAACTCAGGTCCTGCACCCCCACCCCCACCTGGTACACCTCCAGCCAAGCACAATGGAAATCACAAGTCTGGCGGTGACAACTCATCATCAAATGGTGGGTCAGGTGGCAAGAAATCAGGAATAGGGGGTGGTGCCATAGCAGGAATAGTGATATCTCTTCTTGTAGTTACAGCGATTTTAGCATTCTTTCTCATAAAGAAAAGGTCAAAGAAGTCATCTTCAGATGTGGAAAAGTTTGAAAGTCGGCCCTTTGCTCCCCTTGCAAGTGAAGTGCAAGAAATGAAGTCTGTACAAACCCCTGCCCCGCTGGACTTCAAGACCTTTGATACTCCTGCCACAATAAATCTTAGACCCCCACCAGTTGATCGCAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

370

Amino Acids

39.74

Weight (kDa)

6.43

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53730 AT1G53730 AT3G14350 AT3G14350 AT3G14350
fragaria_vesca	FvH4_6g36180 FvH4_6g36180
malus_domestica	MD09G1171600.v1.1 MD17G1155400.v1.1
prunus_persica	Prupe.3G030000_v2.0.a1
pyrus_communis	pycom09g08890 pycom17g14820
rosa_chinensis	RchiOBHm_Chr2g0148161
rosa_laevigata	RLG00000020322
rosa_multiflora	Rmu_sc0001516.1_g000101
rosa_roxburghii	Rroxscaffold_2G00099030
rosa_rugosa	Rorug02G0404100
rosa_samantha	Rh2AG462700 Rh2BG475700 Rh2CG449500 Rh2DG484400
rosa_wichuraiana	Rw2G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	863
AccI	GTMKAC	1 cut(s)	334
AciI	CCGC	2 cut(s)	804, 1037
AclWI	GGATC	4 cut(s)	80, 167, 394, 522
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	4 cut(s)	128, 260, 446, 936
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	2 cut(s)	766, 1023
AfiI	CCNNNNNNNGG	1 cut(s)	761
AflIII	ACRYGT	1 cut(s)	726
AgsI	TTSAA	8 cut(s)	248, 391, 475, 526, 659, 697, 971, 1048
AjnI	CCWGG	1 cut(s)	760
AluBI	AGCT	6 cut(s)	66, 126, 145, 274, 460, 493
AluI	AGCT	6 cut(s)	66, 126, 145, 274, 460, 493
Alw21I	GWGCWC	2 cut(s)	106, 209
Alw26I	GTCTC	1 cut(s)	2
AlwI	GGATC	4 cut(s)	80, 167, 394, 522
AlwNI	CAGNNNCTG	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	181, 977
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	130
ArsI	GACNNNNNNTTYG	2 cut(s)	815, 847
AseI	ATTAAT	1 cut(s)	705
Asp700I	GAANNNNTTC	1 cut(s)	493
AspS9I	GGNCC	2 cut(s)	740, 978
AsuHPI	GGTGA	2 cut(s)	664, 818
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	740
BaeI	ACNNNNGTAYC	2 cut(s)	251, 284
BalI	TGGCCA	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	863
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	236
Bbv12I	GWGCWC	2 cut(s)	106, 209
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	4 cut(s)	77, 419, 515, 713
BciT130I	CCWGG	1 cut(s)	762
BcoDI	GTCTC	1 cut(s)	2
BfaI	CTAG	2 cut(s)	263, 302
BisI	GCNGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	79
Bme1390I	CCNGG	1 cut(s)	762
Bme18I	GGWCC	1 cut(s)	740
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	2 cut(s)	740, 978
BmiI	GGNNCC	2 cut(s)	562, 865
BmrFI	CCNGG	1 cut(s)	762
BmsI	GCATC	1 cut(s)	48
BpiI	GAAGAC	1 cut(s)	236
BpmI	CTGGAG	2 cut(s)	731, 756
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	553
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	373
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse118I	RCCGGY	1 cut(s)	674
Bse1I	ACTGG	4 cut(s)	184, 469, 601, 1091
BseBI	CCWGG	1 cut(s)	762
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	1 cut(s)	724
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseMII	CTCAG	3 cut(s)	155, 540, 750
BseNI	ACTGG	4 cut(s)	184, 469, 601, 1091
BseXI	GCAGC	1 cut(s)	64
BsgI	GTGCAG	1 cut(s)	729
BshFI	GGCC	2 cut(s)	183, 979
BshNI	GGYRCC	1 cut(s)	863
BsiHKAI	GWGCWC	2 cut(s)	106, 209
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	2 cut(s)	271, 625
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	2
BsmFI	GGGAC	2 cut(s)	271, 625
BsmI	GAATGC	2 cut(s)	45, 914
BsnI	GGCC	2 cut(s)	183, 979
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	3 cut(s)	106, 209, 215
Bsp1407I	TGTACA	1 cut(s)	1021
Bsp143I	GATC	5 cut(s)	85, 172, 399, 514, 1096
BspACI	CCGC	2 cut(s)	804, 1037
BspANI	GGCC	2 cut(s)	183, 979
BspCNI	CTCAG	3 cut(s)	154, 541, 749
BspLI	GGNNCC	2 cut(s)	562, 865
BspPI	GGATC	4 cut(s)	80, 167, 394, 522
BspT107I	GGYRCC	1 cut(s)	863
BsrFI	RCCGGY	1 cut(s)	674
BsrGI	TGTACA	1 cut(s)	1021
BsrI	ACTGG	4 cut(s)	184, 469, 601, 1091
BssAI	RCCGGY	1 cut(s)	674
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	5 cut(s)	85, 172, 399, 514, 1096
BssNAI	GTATAC	1 cut(s)	335
BssNI	GRCGYC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	216
BssT1I	CCWWGG	1 cut(s)	373
Bst1107I	GTATAC	1 cut(s)	335
Bst2BI	CACGAG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	762
Bst4CI	ACNGT	1 cut(s)	668
Bst6I	CTCTTC	1 cut(s)	894
BstACI	GRCGYC	1 cut(s)	621
BstAUI	TGTACA	1 cut(s)	1021
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	4 cut(s)	141, 549, 736, 1079
BstF5I	GGATG	1 cut(s)	724
BstKTI	GATC	5 cut(s)	88, 175, 402, 517, 1099
BstMAI	GTCTC	1 cut(s)	2
BstMBI	GATC	5 cut(s)	85, 172, 399, 514, 1096
BstMWI	GCNNNNNNNGC	2 cut(s)	911, 992
BstNI	CCWGG	1 cut(s)	762
BstNSI	RCATGY	1 cut(s)	730
BstSCI	CCNGG	1 cut(s)	760
BstV1I	GCAGC	1 cut(s)	64
BstV2I	GAAGAC	1 cut(s)	236
BstX2I	RGATCY	3 cut(s)	85, 399, 514
BstYI	RGATCY	3 cut(s)	85, 399, 514
BstZ17I	GTATAC	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	183, 979
BtgZI	GCGATG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	724
Cac8I	GCNNGC	1 cut(s)	328
CaiI	CAGNNNCTG	1 cut(s)	743
Cfr10I	RCCGGY	1 cut(s)	674
Cfr13I	GGNCC	2 cut(s)	740, 978
CsiI	ACCWGGT	1 cut(s)	760
Csp6I	GTAC	2 cut(s)	765, 1022
CviAII	CATG	4 cut(s)	177, 307, 358, 727
CviQI	GTAC	2 cut(s)	765, 1022
DdeI	CTNAG	4 cut(s)	141, 549, 736, 1079
DpnI	GATC	5 cut(s)	87, 174, 401, 516, 1098
DpnII	GATC	5 cut(s)	85, 172, 399, 514, 1096
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	215
Eco32I	GATATC	1 cut(s)	885
Eco47I	GGWCC	1 cut(s)	740
Eco57I	CTGAAG	4 cut(s)	128, 260, 446, 936
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	740
EcoRII	CCWGG	1 cut(s)	760
EcoRV	GATATC	1 cut(s)	885
EcoT14I	CCWWGG	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	4 cut(s)	180, 310, 361, 730
FaqI	GGGAC	2 cut(s)	271, 625
FatI	CATG	4 cut(s)	176, 306, 357, 726
FauI	CCCGC	1 cut(s)	1044
FblI	GTMKAC	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	78
FokI	GGATG	1 cut(s)	731
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	78
FspBI	CTAG	2 cut(s)	263, 302
GluI	GCNGC	1 cut(s)	78
GsuI	CTGGAG	2 cut(s)	731, 756
HaeIII	GGCC	2 cut(s)	183, 979
HapII	CCGG	1 cut(s)	675
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	180, 310, 361, 730
HincII	GTYRAC	1 cut(s)	606
HindII	GTYRAC	1 cut(s)	606
HindIII	AAGCTT	1 cut(s)	491
HinfI	GANTC	4 cut(s)	58, 157, 427, 682
HpaI	GTTAAC	1 cut(s)	606
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	2 cut(s)	664, 818
Hpy166II	GTNNAC	3 cut(s)	335, 606, 767
Hpy188I	TCNGA	6 cut(s)	108, 279, 354, 465, 651, 955
Hpy188III	TCNNGA	7 cut(s)	216, 395, 548, 686, 710, 849, 1048
Hpy8I	GTNNAC	3 cut(s)	335, 606, 767
HpyAV	CCTTC	3 cut(s)	103, 554, 709
HpyCH4III	ACNGT	1 cut(s)	668
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	7 cut(s)	39, 45, 326, 592, 746, 995, 1006
HpyF10VI	GCNNNNNNNGC	2 cut(s)	911, 992
HpyF3I	CTNAG	4 cut(s)	141, 549, 736, 1079
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	180, 310, 361, 730
KspAI	GTTAAC	1 cut(s)	606
Kzo9I	GATC	5 cut(s)	85, 172, 399, 514, 1096
LmnI	GCTCC	3 cut(s)	71, 566, 991
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	48
MabI	ACCWGGT	1 cut(s)	760
MaeI	CTAG	2 cut(s)	263, 302
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	4 cut(s)	220, 449, 806, 898
MalI	GATC	5 cut(s)	87, 174, 401, 516, 1098
MboI	GATC	5 cut(s)	85, 172, 399, 514, 1096
MboII	GAAGA	4 cut(s)	236, 489, 881, 942
MflI	RGATCY	3 cut(s)	85, 399, 514
MhlI	GDGCHC	3 cut(s)	106, 209, 215
MlsI	TGGCCA	1 cut(s)	183
MluCI	AATT	3 cut(s)	130, 228, 526
MluNI	TGGCCA	1 cut(s)	183
MlyI	GAGTC	3 cut(s)	67, 166, 421
MmeI	TCCRAC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	150, 360, 575, 780
Mox20I	TGGCCA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	493
MscI	TGGCCA	1 cut(s)	183
MseI	TTAA	6 cut(s)	128, 201, 368, 432, 605, 705
MslI	CAYNNNNRTG	1 cut(s)	416
Msp20I	TGGCCA	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	1039
MspI	CCGG	1 cut(s)	675
MspR9I	CCNGG	1 cut(s)	762
Mva1269I	GAATGC	2 cut(s)	45, 914
MvaI	CCWGG	1 cut(s)	762
MwoI	GCNNNNNNNGC	2 cut(s)	911, 992
NdeII	GATC	5 cut(s)	85, 172, 399, 514, 1096
NlaIII	CATG	4 cut(s)	180, 310, 361, 730
NlaIV	GGNNCC	2 cut(s)	562, 865
NmuCI	GTSAC	2 cut(s)	449, 806
NspI	RCATGY	1 cut(s)	730
PciI	ACATGT	1 cut(s)	726
PctI	GAATGC	2 cut(s)	45, 914
PdmI	GAANNNNTTC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	682
PkrI	GCNGC	1 cut(s)	79
PleI	GAGTC	3 cut(s)	66, 165, 421
PpsI	GAGTC	3 cut(s)	66, 165, 421
PpuMI	RGGWCCY	1 cut(s)	740
PscI	ACATGT	1 cut(s)	726
PshBI	ATTAAT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	740
Psp6I	CCWGG	1 cut(s)	760
PspGI	CCWGG	1 cut(s)	760
PspN4I	GGNNCC	2 cut(s)	562, 865
PspPI	GGNCC	2 cut(s)	740, 978
PspPPI	RGGWCCY	1 cut(s)	740
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	3 cut(s)	85, 399, 514
RsaI	GTAC	2 cut(s)	766, 1023
RsaNI	GTAC	2 cut(s)	765, 1022
RseI	CAYNNNNRTG	1 cut(s)	416
SaqAI	TTAA	6 cut(s)	128, 201, 368, 432, 605, 705
SatI	GCNGC	1 cut(s)	78
Sau3AI	GATC	5 cut(s)	85, 172, 399, 514, 1096
Sau96I	GGNCC	2 cut(s)	740, 978
SchI	GAGTC	3 cut(s)	67, 166, 421
ScrFI	CCNGG	1 cut(s)	762
SduI	GDGCHC	3 cut(s)	106, 209, 215
SexAI	ACCWGGT	1 cut(s)	760
SfaNI	GCATC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	740
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	568
SmoI	CTYRAG	1 cut(s)	568
Sse9I	AATT	3 cut(s)	130, 228, 526
SsiI	CCGC	2 cut(s)	804, 1037
SspI	AATATT	1 cut(s)	655
SspMI	CTAG	2 cut(s)	263, 302
StyD4I	CCNGG	1 cut(s)	760
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	1 cut(s)	668
TaiI	ACGT	1 cut(s)	624
TasI	AATT	3 cut(s)	130, 228, 526
TatI	WGTACW	1 cut(s)	1021
TfiI	GAWTC	1 cut(s)	682
Tru1I	TTAA	6 cut(s)	128, 201, 368, 432, 605, 705
Tru9I	TTAA	6 cut(s)	128, 201, 368, 432, 605, 705
TseFI	GTSAC	2 cut(s)	449, 806
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	2 cut(s)	449, 806
TspDTI	ATGAA	2 cut(s)	590, 1028
VpaK11BI	GGWCC	1 cut(s)	740
VspI	ATTAAT	1 cut(s)	705
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	334
XmnI	GAANNNNTTC	1 cut(s)	493
XspI	CTAG	2 cut(s)	263, 302
ZraI	GACGTC	1 cut(s)	622

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.