Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009297

Physical Location & Seq

Genomic Coordinates Reverse (-)

12542658 .. 12546796

Gene Structure 4139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g14820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGATAGTAGAGCATAATTATACAGAAGATACAGAGCTACGTACACAGCAACCAAGAGGAGTGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGTGGAGACTTGGAGGTGGGTTTTGCTGGTTTTCAGCATCTGCATTTTTGGGTGGAGTCCAAGCTCCATCAATGCCGCCACAGATCCCACAGATGTTAGTGCTCTGAAGGTCTTGTACAGTAGCTTAAATTCCCCATCTCAGCTAACCCAATGGAGTCAAAATGGTGATGATCGATGTGGCCAGTCGTGGAAAGGTGTTAAGTGCTCGGGCTCACGAGTAACAGAAATTGATTTATCAGGTCTTCAACTTTCTGGGATGCTAGGGTATCAGCTTCAGACTCTGACAGCACTAACCAACCTAGACATGAGCAATAATAATCTTGCAGGCACTATACCGTTTCAACTTCCTCCGAACATGACACGATTAAACCTTGGTGGTAATAACTTCAATCAAGACATCCCTTATTCCATCTCTCAGATAGCGTCTCTTATATACCTGAACATTAGTCACAATCAGATTCAGAACCAGCTGGGTGACATTTTTGGAAAGCTCTCTTCTCTATCCGTATTGGATCTGTCTTTCAATTCTCTGTCAGGCAGCCTTCCTGAGAGTTTTAGCTCCCTCTCAAGTATGAAAACAATGTTCTTGCAGAATAACCAGTTGACAGGGACTATTGATGTCCTTGCCAATCTGCCCCTTGATAATCTGAATATTGAAAATAATCATTTTACCGGCTGGATTCCGGAGCAGTTGAAAAACATTAATCTGGAGAAGGATGGAAACATGTGGAACTCAGGTCCTGCACCCCCACCCCCACCTGGTACACCTCCAGCCAAGAGCAACGGAAATCACAAATCTGGCAGCAACAACTCACCGTCAAAAGGTGGTTCAGGTGAAGGTGATAAGAAATCAGGAATTGGGGGTGGTGCCATTGCAGGAATAGTGATATCTCTTCTTGTAGTTACTGCAATTGTAGCATTCTTTCTCATAAAGAAAAGGTCAAAGAAGTCATCCTCAGATGTGGAAAAGTTTGAAAGTCGGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

367

Amino Acids

40.13

Weight (kDa)

6.15

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53730 AT1G53730 AT3G14350 AT3G14350 AT3G14350
fragaria_vesca	FvH4_6g36180 FvH4_6g36180
malus_domestica	MD09G1171600.v1.1 MD17G1155400.v1.1
prunus_persica	Prupe.3G030000_v2.0.a1
pyrus_communis	pycom09g08890 pycom17g14820
rosa_chinensis	RchiOBHm_Chr2g0148161
rosa_laevigata	RLG00000020322
rosa_multiflora	Rmu_sc0001516.1_g000101
rosa_roxburghii	Rroxscaffold_2G00099030
rosa_rugosa	Rorug02G0404100
rosa_samantha	Rh2AG462700 Rh2BG475700 Rh2CG449500 Rh2DG484400
rosa_wichuraiana	Rw2G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	980
AccIII	TCCGGA	1 cut(s)	796
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	2 cut(s)	191, 633
AcoI	YGGCCR	1 cut(s)	292
AcsI	RAATTY	1 cut(s)	241
AcuI	CTGAAG	2 cut(s)	239, 371
AfaI	GTAC	3 cut(s)	43, 230, 877
AfiI	CCNNNNNNNGG	2 cut(s)	872, 935
AflIII	ACRYGT	1 cut(s)	837
AgsI	TTSAA	7 cut(s)	359, 455, 502, 637, 770, 808, 1088
AjnI	CCWGG	1 cut(s)	871
AluBI	AGCT	8 cut(s)	37, 177, 237, 256, 385, 583, 604, 672
AluI	AGCT	8 cut(s)	37, 177, 237, 256, 385, 583, 604, 672
Alw21I	GWGCWC	2 cut(s)	217, 320
Alw26I	GTCTC	2 cut(s)	113, 543
AlwI	GGATC	2 cut(s)	191, 633
AlwNI	CAGNNNCTG	3 cut(s)	153, 394, 854
Ama87I	CYCGRG	1 cut(s)	319
Aor13HI	TCCGGA	1 cut(s)	796
AoxI	GGCC	2 cut(s)	292, 1094
ApeKI	GCWGC	2 cut(s)	651, 915
ApoI	RAATTY	1 cut(s)	241
AseI	ATTAAT	1 cut(s)	816
AspS9I	GGNCC	2 cut(s)	851, 1095
AsuHPI	GGTGA	5 cut(s)	290, 599, 918, 959, 965
AvaI	CYCGRG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	851
BalI	TGGCCA	1 cut(s)	294
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	326
BarI	GAAGNNNNNNTAC	2 cut(s)	212, 244
BauI	CACGAG	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	347
Bbv12I	GWGCWC	2 cut(s)	217, 320
BbvI	GCAGC	2 cut(s)	663, 927
BccI	CCATC	5 cut(s)	106, 188, 256, 530, 824
BciT130I	CCWGG	1 cut(s)	873
BcoDI	GTCTC	2 cut(s)	113, 543
BfaI	CTAG	2 cut(s)	374, 413
BisI	GCNGC	3 cut(s)	189, 652, 916
BlsI	GCNGC	3 cut(s)	190, 653, 917
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	1 cut(s)	851
BmeT110I	CYCGRG	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	851, 1095
BmiI	GGNNCC	1 cut(s)	982
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	2 cut(s)	159, 360
BpiI	GAAGAC	1 cut(s)	347
BpmI	CTGGAG	2 cut(s)	842, 867
BpuEI	CTTGAG	1 cut(s)	664
Bsa29I	ATCGAT	1 cut(s)	286
BsaAI	YACGTR	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	484
BsaWI	WCCGGW	1 cut(s)	796
Bsc4I	CCNNNNNNNGG	2 cut(s)	872, 935
Bse118I	RCCGGY	1 cut(s)	785
Bse1I	ACTGG	2 cut(s)	295, 712
Bse3DI	GCAATG	1 cut(s)	984
BseAI	TCCGGA	1 cut(s)	796
BseBI	CCWGG	1 cut(s)	873
BseCI	ATCGAT	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	484
BseGI	GGATG	4 cut(s)	375, 510, 835, 1064
BseLI	CCNNNNNNNGG	2 cut(s)	872, 935
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	5 cut(s)	266, 542, 651, 861, 1083
BseNI	ACTGG	2 cut(s)	295, 712
BseRI	GAGGAG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	663, 927
BseYI	CCCAGC	1 cut(s)	583
BsgI	GTGCAG	1 cut(s)	840
BshFI	GGCC	2 cut(s)	294, 1096
BshNI	GGYRCC	1 cut(s)	980
BshVI	ATCGAT	1 cut(s)	286
BsiHKAI	GWGCWC	2 cut(s)	217, 320
BsiHKCI	CYCGRG	1 cut(s)	319
BsiSI	CCGG	2 cut(s)	786, 797
BslFI	GGGAC	1 cut(s)	736
BslI	CCNNNNNNNGG	2 cut(s)	872, 935
BsmAI	GTCTC	2 cut(s)	113, 543
BsmBI	CGTCTC	1 cut(s)	543
BsmFI	GGGAC	1 cut(s)	736
BsmI	GAATGC	1 cut(s)	1031
BsnI	GGCC	2 cut(s)	294, 1096
BsoBI	CYCGRG	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	217, 320, 326
Bsp13I	TCCGGA	1 cut(s)	796
Bsp1407I	TGTACA	1 cut(s)	228
Bsp143I	GATC	3 cut(s)	196, 283, 625
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	2 cut(s)	294, 1096
BspCNI	CTCAG	5 cut(s)	265, 541, 652, 860, 1082
BspDI	ATCGAT	1 cut(s)	286
BspEI	TCCGGA	1 cut(s)	796
BspLI	GGNNCC	1 cut(s)	982
BspPI	GGATC	2 cut(s)	191, 633
BspT107I	GGYRCC	1 cut(s)	980
BsrDI	GCAATG	1 cut(s)	984
BsrFI	RCCGGY	1 cut(s)	785
BsrGI	TGTACA	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	295, 712
BssAI	RCCGGY	1 cut(s)	785
BssECI	CCNNGG	1 cut(s)	484
BssMI	GATC	3 cut(s)	196, 283, 625
BssSI	CACGAG	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	484
Bst2BI	CACGAG	1 cut(s)	327
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	3 cut(s)	233, 450, 930
Bst6I	CTCTTC	2 cut(s)	613, 1011
BstAUI	TGTACA	1 cut(s)	228
BstBAI	YACGTR	1 cut(s)	41
BstC8I	GCNNGC	1 cut(s)	439
BstDEI	CTNAG	5 cut(s)	252, 528, 660, 847, 1069
BstF5I	GGATG	4 cut(s)	375, 510, 835, 1064
BstKTI	GATC	3 cut(s)	199, 286, 628
BstMAI	GTCTC	2 cut(s)	113, 543
BstMBI	GATC	3 cut(s)	196, 283, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	1028
BstNI	CCWGG	1 cut(s)	873
BstNSI	RCATGY	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	871
BstSNI	TACGTA	1 cut(s)	41
BstV1I	GCAGC	2 cut(s)	663, 927
BstV2I	GAAGAC	1 cut(s)	347
BstX2I	RGATCY	2 cut(s)	196, 625
BstYI	RGATCY	2 cut(s)	196, 625
Bsu15I	ATCGAT	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	294, 1096
BsuTUI	ATCGAT	1 cut(s)	286
BtsCI	GGATG	4 cut(s)	375, 510, 835, 1064
Cac8I	GCNNGC	1 cut(s)	439
CaiI	CAGNNNCTG	3 cut(s)	153, 394, 854
Cfr10I	RCCGGY	1 cut(s)	785
Cfr13I	GGNCC	2 cut(s)	851, 1095
ClaI	ATCGAT	1 cut(s)	286
CseI	GACGC	1 cut(s)	525
CsiI	ACCWGGT	1 cut(s)	871
Csp6I	GTAC	3 cut(s)	42, 229, 876
CviAII	CATG	3 cut(s)	418, 469, 838
CviQI	GTAC	3 cut(s)	42, 229, 876
DdeI	CTNAG	5 cut(s)	252, 528, 660, 847, 1069
DpnI	GATC	3 cut(s)	198, 285, 627
DpnII	GATC	3 cut(s)	196, 283, 625
EaeI	YGGCCR	1 cut(s)	292
Eam1104I	CTCTTC	2 cut(s)	613, 1011
EarI	CTCTTC	2 cut(s)	613, 1011
Eco105I	TACGTA	1 cut(s)	41
Eco130I	CCWWGG	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	326
Eco32I	GATATC	1 cut(s)	1002
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	2 cut(s)	239, 371
Eco88I	CYCGRG	1 cut(s)	319
EcoO109I	RGGNCCY	1 cut(s)	851
EcoRII	CCWGG	1 cut(s)	871
EcoRV	GATATC	1 cut(s)	1002
EcoT14I	CCWWGG	1 cut(s)	484
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	543
FaeI	CATG	3 cut(s)	421, 472, 841
FaqI	GGGAC	1 cut(s)	736
FatI	CATG	3 cut(s)	417, 468, 837
Fnu4HI	GCNGC	3 cut(s)	189, 652, 916
FokI	GGATG	4 cut(s)	382, 497, 842, 1051
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	3 cut(s)	189, 652, 916
FspBI	CTAG	2 cut(s)	374, 413
GluI	GCNGC	3 cut(s)	189, 652, 916
GsaI	CCCAGC	1 cut(s)	587
GsuI	CTGGAG	2 cut(s)	842, 867
HaeIII	GGCC	2 cut(s)	294, 1096
HapII	CCGG	2 cut(s)	786, 797
HgaI	GACGC	1 cut(s)	525
Hin1II	CATG	3 cut(s)	421, 472, 841
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HinfI	GANTC	5 cut(s)	169, 268, 391, 571, 793
HpaII	CCGG	2 cut(s)	786, 797
HphI	GGTGA	5 cut(s)	290, 599, 918, 959, 965
Hpy166II	GTNNAC	3 cut(s)	44, 717, 878
Hpy188I	TCNGA	9 cut(s)	219, 390, 396, 465, 531, 570, 576, 762, 1072
Hpy188III	TCNNGA	6 cut(s)	327, 506, 659, 797, 821, 966
Hpy8I	GTNNAC	3 cut(s)	44, 717, 878
HpyAV	CCTTC	4 cut(s)	214, 665, 820, 944
HpyCH4III	ACNGT	3 cut(s)	233, 450, 930
HpyCH4IV	ACGT	1 cut(s)	40
HpyCH4V	TGCA	6 cut(s)	156, 437, 703, 857, 989, 1022
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1028
HpyF3I	CTNAG	5 cut(s)	252, 528, 660, 847, 1069
HpySE526I	ACGT	1 cut(s)	40
Hsp92II	CATG	3 cut(s)	421, 472, 841
Kpn2I	TCCGGA	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	196, 283, 625
LmnI	GCTCC	3 cut(s)	182, 677, 799
Lsp1109I	GCAGC	2 cut(s)	663, 927
LweI	GCATC	2 cut(s)	159, 360
MabI	ACCWGGT	1 cut(s)	871
MaeI	CTAG	2 cut(s)	374, 413
MaeII	ACGT	1 cut(s)	40
MaeIII	GTNAC	4 cut(s)	331, 560, 587, 1015
MalI	GATC	3 cut(s)	198, 285, 627
MboI	GATC	3 cut(s)	196, 283, 625
MboII	GAAGA	4 cut(s)	38, 347, 600, 998
MfeI	CAATTG	1 cut(s)	1023
MflI	RGATCY	2 cut(s)	196, 625
MhlI	GDGCHC	3 cut(s)	217, 320, 326
MlsI	TGGCCA	1 cut(s)	294
MluCI	AATT	6 cut(s)	16, 241, 339, 637, 969, 1023
MluNI	TGGCCA	1 cut(s)	294
MlyI	GAGTC	3 cut(s)	178, 277, 385
MnlI	CCTC	6 cut(s)	50, 120, 471, 686, 891, 1078
Mox20I	TGGCCA	1 cut(s)	294
MroI	TCCGGA	1 cut(s)	796
MscI	TGGCCA	1 cut(s)	294
MseI	TTAA	4 cut(s)	239, 312, 479, 816
Msp20I	TGGCCA	1 cut(s)	294
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	2 cut(s)	786, 797
MspR9I	CCNGG	1 cut(s)	873
MunI	CAATTG	1 cut(s)	1023
Mva1269I	GAATGC	1 cut(s)	1031
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	1 cut(s)	1028
NdeII	GATC	3 cut(s)	196, 283, 625
NlaIII	CATG	3 cut(s)	421, 472, 841
NlaIV	GGNNCC	1 cut(s)	982
NmuCI	GTSAC	2 cut(s)	560, 587
NspI	RCATGY	1 cut(s)	841
PciI	ACATGT	1 cut(s)	837
PctI	GAATGC	1 cut(s)	1031
PfeI	GAWTC	2 cut(s)	571, 793
PkrI	GCNGC	3 cut(s)	190, 653, 917
PleI	GAGTC	3 cut(s)	177, 276, 385
PpsI	GAGTC	3 cut(s)	177, 276, 385
Ppu21I	YACGTR	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	851
PscI	ACATGT	1 cut(s)	837
PshBI	ATTAAT	1 cut(s)	816
Psp5II	RGGWCCY	1 cut(s)	851
Psp6I	CCWGG	1 cut(s)	871
PspFI	CCCAGC	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	871
PspN4I	GGNNCC	1 cut(s)	982
PspPI	GGNCC	2 cut(s)	851, 1095
PspPPI	RGGWCCY	1 cut(s)	851
PstNI	CAGNNNCTG	3 cut(s)	153, 394, 854
PsuI	RGATCY	2 cut(s)	196, 625
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	3 cut(s)	43, 230, 877
RsaNI	GTAC	3 cut(s)	42, 229, 876
SaqAI	TTAA	4 cut(s)	239, 312, 479, 816
SatI	GCNGC	3 cut(s)	189, 652, 916
Sau3AI	GATC	3 cut(s)	196, 283, 625
Sau96I	GGNCC	2 cut(s)	851, 1095
SchI	GAGTC	3 cut(s)	178, 277, 385
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	3 cut(s)	217, 320, 326
SexAI	ACCWGGT	1 cut(s)	871
SfaNI	GCATC	2 cut(s)	159, 360
SinI	GGWCC	1 cut(s)	851
SmlI	CTYRAG	1 cut(s)	679
SmoI	CTYRAG	1 cut(s)	679
SnaBI	TACGTA	1 cut(s)	41
Sse9I	AATT	6 cut(s)	16, 241, 339, 637, 969, 1023
SsiI	CCGC	1 cut(s)	189
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	2 cut(s)	374, 413
StyD4I	CCNGG	1 cut(s)	871
StyI	CCWWGG	1 cut(s)	484
TaaI	ACNGT	3 cut(s)	233, 450, 930
TaiI	ACGT	1 cut(s)	43
TaqI	TCGA	1 cut(s)	286
TasI	AATT	6 cut(s)	16, 241, 339, 637, 969, 1023
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	2 cut(s)	571, 793
Tru1I	TTAA	4 cut(s)	239, 312, 479, 816
Tru9I	TTAA	4 cut(s)	239, 312, 479, 816
TseFI	GTSAC	2 cut(s)	560, 587
TseI	GCWGC	2 cut(s)	651, 915
Tsp45I	GTSAC	2 cut(s)	560, 587
TspDTI	ATGAA	1 cut(s)	701
TspGWI	ACGGA	2 cut(s)	607, 912
VpaK11BI	GGWCC	1 cut(s)	851
VspI	ATTAAT	1 cut(s)	816
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	841
XspI	CTAG	2 cut(s)	374, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.