Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009297

Physical Location & Seq

Genomic Coordinates Forward (+)

20513943 .. 20521146

Gene Structure 7204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00099030.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGAAGTCTGTACAAACCTCTGCCACATTGGATATGAAGACCTTTGATACTCCTGCCACAATAAATCTTAGACCCCCACCTGTTGATCGTCATAAATCATTTGATGATGAGGAATTCTCAAAGAAGCCCATTGTTGTGAAGAAAACCATTGCAGCTCCTATAAATGTGACCTCATATTCAATAGCAGACCTGCAGATGGCTACTGGAAGCTTTAGTGTTGAAAACCTTCTTGGTGAGGGGTCTTTTGGACGTGTTTATCGGGCTCAATTTGATGATGGGAAGGTTCTTGCTGTTAAGAAAATAGATTCATCTGTTCTTCCAAGTGAATTGTCTGAGGATTTCACTGAGATAGTTTCAAACATCTCCCATTTGCATCACGCAAATGTAACGGAGTTGGTGGGTTTCTGTTCGGAGCATGGACAGCACCTGCTAGTCTATGAGTTCCATAAAAATGGTTCGTTGCACGACTTCCTGCATCTTTCAGATGACTACAGCAAGCCATTGACATGGAACTCTCGGGTTAAGATTGCTTTGGGGACTGCACGAGCACTAGAGTACTTGCATGAAGTTTGCTCACCATCAATTATTCACAAGAATATAAAGTCCAGCAACATATTACTGGATGTGGAGCTCAACCCTCATCTTTCAGACTCCGGCCTTGCAAGCTCTATCCCCAATGCTGATCAGGCATTGGACCACAATGCAGGATCTGGGTACAGTGCACCTGAGGTTGCGATGTCTGGTCAATATACTCTAAAGAGTGATGTCTACAGTTTTGGAGTGGTTATGCTGGAGCTTATTAGTGGGCGCAAACCATTTGATAGCTCAAGGTCTAGATCCGAACAATCTTTGGTTCGATGGGCAACACCCCAACTCCATGATATCGATGCTCTTTCAAAAATGGCAGACCCAGCTCTCAAGGGGCTCTATCCAGTTAAATCTTTGTCACGGTTTGCTGATGTGATTGCCCTCTGTGTCCAGCCCGAGCCTGAGTTCCGACCACCAATGTCGGAAGTCGTTCAAGCCTTGGTTCGGTTAGTGCAGCGAGCCAACATGAGCAGGAGAACAGTTGGAAACGATCAAGGAGGATCCCAGAGAGGTGACAGCACTGATGCACAGGAGGAAATGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8 Pkinase_Tyr

Protein Analysis

377

Amino Acids

41.44

Weight (kDa)

5.77

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	72 - 341	6.7e-41	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	73 - 343	2.5e-43	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009297)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53730 AT1G53730 AT3G14350 AT3G14350 AT3G14350
fragaria_vesca	FvH4_6g36180 FvH4_6g36180
malus_domestica	MD09G1171600.v1.1 MD17G1155400.v1.1
prunus_persica	Prupe.3G030000_v2.0.a1
pyrus_communis	pycom09g08890 pycom17g14820
rosa_chinensis	RchiOBHm_Chr2g0148161
rosa_laevigata	RLG00000020322
rosa_multiflora	Rmu_sc0001516.1_g000101
rosa_roxburghii	Rroxscaffold_2G00099030
rosa_rugosa	Rorug02G0404100
rosa_samantha	Rh2AG462700 Rh2BG475700 Rh2CG449500 Rh2DG484400
rosa_wichuraiana	Rw2G037720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	435
Acc36I	ACCTGC	2 cut(s)	198, 435
AccI	GTMKAC	1 cut(s)	768
AclWI	GGATC	4 cut(s)	715, 831, 1083, 1096
AcsI	RAATTY	1 cut(s)	113
AfaI	GTAC	3 cut(s)	12, 557, 716
AfiI	CCNNNNNNNGG	2 cut(s)	196, 1032
AflIII	ACRYGT	1 cut(s)	250
AgsI	TTSAA	5 cut(s)	180, 221, 357, 897, 1022
AjiI	CACGTC	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	213, 245
AluBI	AGCT	7 cut(s)	155, 210, 631, 666, 796, 825, 914
AluI	AGCT	7 cut(s)	155, 210, 631, 666, 796, 825, 914
Alw21I	GWGCWC	3 cut(s)	550, 633, 724
Alw44I	GTGCAC	1 cut(s)	720
AlwI	GGATC	4 cut(s)	715, 831, 1083, 1096
AlwNI	CAGNNNCTG	2 cut(s)	427, 710
Ama87I	CYCGRG	2 cut(s)	516, 983
AoxI	GGCC	1 cut(s)	655
ApaLI	GTGCAC	1 cut(s)	720
ApeKI	GCWGC	2 cut(s)	152, 1042
ApoI	RAATTY	1 cut(s)	113
Asp700I	GAANNNNTTC	2 cut(s)	225, 1017
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	3 cut(s)	245, 567, 1112
AvaI	CYCGRG	2 cut(s)	516, 983
AvaII	GGWCC	1 cut(s)	694
AxyI	CCTNAGG	1 cut(s)	726
BaeGI	GKGCMC	1 cut(s)	724
BamHI	GGATCC	1 cut(s)	1088
BanII	GRGCYC	3 cut(s)	265, 633, 927
BauI	CACGAG	1 cut(s)	543
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	3 cut(s)	550, 633, 724
BbvI	GCAGC	2 cut(s)	164, 1054
BccI	CCATC	4 cut(s)	190, 269, 586, 852
BclI	TGATCA	1 cut(s)	682
BfaI	CTAG	3 cut(s)	431, 551, 834
BfmI	CTRYAG	3 cut(s)	191, 490, 769
BfuAI	ACCTGC	2 cut(s)	198, 435
BisI	GCNGC	2 cut(s)	153, 1043
BlsI	GCNGC	2 cut(s)	154, 1044
BmcAI	AGTACT	1 cut(s)	557
Bme18I	GGWCC	1 cut(s)	694
BmeT110I	CYCGRG	2 cut(s)	516, 983
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	1 cut(s)	1090
BmsI	GCATC	4 cut(s)	382, 484, 877, 1102
BpiI	GAAGAC	1 cut(s)	44
BplI	GAGNNNNNCTC	2 cut(s)	101, 133
BpmI	CTGGAG	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	811, 902
Bsa29I	ATCGAT	1 cut(s)	885
BsaJI	CCNNGG	1 cut(s)	1026
BsaXI	ACNNNNNCTCC	3 cut(s)	858, 888, 1112
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 1032
Bse1I	ACTGG	3 cut(s)	208, 624, 932
Bse21I	CCTNAGG	1 cut(s)	726
Bse3DI	GCAATG	1 cut(s)	147
BseCI	ATCGAT	1 cut(s)	885
BseDI	CCNNGG	1 cut(s)	1026
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	2 cut(s)	196, 1032
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	4 cut(s)	324, 336, 717, 981
BseNI	ACTGG	3 cut(s)	208, 624, 932
BseSI	GKGCMC	1 cut(s)	724
BseXI	GCAGC	2 cut(s)	164, 1054
BseYI	CCCAGC	1 cut(s)	910
BsgI	GTGCAG	2 cut(s)	525, 1061
BshFI	GGCC	1 cut(s)	657
BshVI	ATCGAT	1 cut(s)	885
BsiHKAI	GWGCWC	3 cut(s)	550, 633, 724
BsiHKCI	CYCGRG	2 cut(s)	516, 983
BsiSI	CCGG	1 cut(s)	654
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	2 cut(s)	196, 1032
BsmFI	GGGAC	1 cut(s)	550
BsnI	GGCC	1 cut(s)	657
BsoBI	CYCGRG	2 cut(s)	516, 983
Bsp1286I	GDGCHC	5 cut(s)	265, 550, 633, 724, 927
Bsp1407I	TGTACA	1 cut(s)	10
Bsp143I	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
BspANI	GGCC	1 cut(s)	657
BspCNI	CTCAG	4 cut(s)	325, 337, 718, 982
BspDI	ATCGAT	1 cut(s)	885
BspLI	GGNNCC	1 cut(s)	1090
BspMAI	CTGCAG	1 cut(s)	195
BspMI	ACCTGC	2 cut(s)	198, 435
BspPI	GGATC	4 cut(s)	715, 831, 1083, 1096
BsrDI	GCAATG	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	10
BsrI	ACTGG	3 cut(s)	208, 624, 932
BssECI	CCNNGG	1 cut(s)	1026
BssMI	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
BssSI	CACGAG	1 cut(s)	543
BssT1I	CCWWGG	1 cut(s)	1026
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	4 cut(s)	719, 773, 951, 1069
BstAUI	TGTACA	1 cut(s)	10
BstC8I	GCNNGC	3 cut(s)	497, 664, 1047
BstDEI	CTNAG	5 cut(s)	68, 333, 345, 726, 990
BstF5I	GGATG	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	6 cut(s)	88, 685, 710, 839, 1081, 1091
BstMBI	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
BstMWI	GCNNNNNNNGC	4 cut(s)	421, 663, 686, 911
BstSFI	CTRYAG	3 cut(s)	191, 490, 769
BstSLI	GKGCMC	1 cut(s)	724
BstV1I	GCAGC	2 cut(s)	164, 1054
BstV2I	GAAGAC	1 cut(s)	44
BstX2I	RGATCY	3 cut(s)	707, 836, 1088
BstXI	CCANNNNNNTGG	2 cut(s)	452, 507
BstYI	RGATCY	3 cut(s)	707, 836, 1088
Bsu15I	ATCGAT	1 cut(s)	885
Bsu36I	CCTNAGG	1 cut(s)	726
BsuRI	GGCC	1 cut(s)	657
BsuTUI	ATCGAT	1 cut(s)	885
BtgZI	GCGATG	1 cut(s)	749
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	3 cut(s)	342, 724, 1107
BveI	ACCTGC	2 cut(s)	198, 435
Cac8I	GCNNGC	3 cut(s)	497, 664, 1047
CaiI	CAGNNNCTG	2 cut(s)	427, 710
CfoI	GCGC	1 cut(s)	810
Cfr13I	GGNCC	1 cut(s)	694
ClaI	ATCGAT	1 cut(s)	885
Csp6I	GTAC	3 cut(s)	11, 556, 715
CviAII	CATG	5 cut(s)	416, 507, 563, 878, 1054
CviQI	GTAC	3 cut(s)	11, 556, 715
DdeI	CTNAG	5 cut(s)	68, 333, 345, 726, 990
DpnI	GATC	6 cut(s)	87, 684, 709, 838, 1080, 1090
DpnII	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
Ecl136II	GAGCTC	1 cut(s)	631
Eco130I	CCWWGG	1 cut(s)	1026
Eco24I	GRGCYC	3 cut(s)	265, 633, 927
Eco32I	GATATC	1 cut(s)	883
Eco47I	GGWCC	1 cut(s)	694
Eco53kI	GAGCTC	1 cut(s)	631
Eco81I	CCTNAGG	1 cut(s)	726
Eco88I	CYCGRG	2 cut(s)	516, 983
EcoICRI	GAGCTC	1 cut(s)	631
EcoRI	GAATTC	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	1026
EcoT38I	GRGCYC	3 cut(s)	265, 633, 927
ErhI	CCWWGG	1 cut(s)	1026
FaeI	CATG	5 cut(s)	419, 510, 566, 881, 1057
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	5 cut(s)	415, 506, 562, 877, 1053
FbaI	TGATCA	1 cut(s)	682
FblI	GTMKAC	1 cut(s)	768
Fnu4HI	GCNGC	2 cut(s)	153, 1043
FokI	GGATG	1 cut(s)	635
FriOI	GRGCYC	3 cut(s)	265, 633, 927
Fsp4HI	GCNGC	2 cut(s)	153, 1043
FspBI	CTAG	3 cut(s)	431, 551, 834
GlaI	GCGC	1 cut(s)	809
GluI	GCNGC	2 cut(s)	153, 1043
GsaI	CCCAGC	1 cut(s)	914
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	1 cut(s)	657
HapII	CCGG	1 cut(s)	654
HhaI	GCGC	1 cut(s)	810
Hin1II	CATG	5 cut(s)	419, 510, 566, 881, 1057
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	2 cut(s)	305, 650
HpaII	CCGG	1 cut(s)	654
HphI	GGTGA	3 cut(s)	245, 567, 1112
Hpy166II	GTNNAC	2 cut(s)	722, 769
Hpy188I	TCNGA	7 cut(s)	334, 412, 484, 649, 841, 998, 1012
Hpy188III	TCNNGA	1 cut(s)	834
Hpy8I	GTNNAC	2 cut(s)	722, 769
HpyAV	CCTTC	2 cut(s)	236, 274
HpyCH4III	ACNGT	4 cut(s)	719, 773, 951, 1069
HpyCH4IV	ACGT	1 cut(s)	250
HpyF10VI	GCNNNNNNNGC	4 cut(s)	421, 663, 686, 911
HpyF3I	CTNAG	5 cut(s)	68, 333, 345, 726, 990
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	5 cut(s)	419, 510, 566, 881, 1057
HspAI	GCGC	1 cut(s)	808
Ksp22I	TGATCA	1 cut(s)	682
Kzo9I	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
LmnI	GCTCC	4 cut(s)	160, 412, 628, 793
Lsp1109I	GCAGC	2 cut(s)	164, 1054
LweI	GCATC	4 cut(s)	382, 484, 877, 1102
MaeI	CTAG	3 cut(s)	431, 551, 834
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	4 cut(s)	166, 385, 945, 1100
MalI	GATC	6 cut(s)	87, 684, 709, 838, 1080, 1090
MboI	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
MboII	GAAGA	3 cut(s)	49, 151, 308
MflI	RGATCY	3 cut(s)	707, 836, 1088
MhlI	GDGCHC	5 cut(s)	265, 550, 633, 724, 927
MluCI	AATT	4 cut(s)	113, 266, 326, 582
MlyI	GAGTC	1 cut(s)	644
MmeI	TCCRAC	3 cut(s)	990, 1021, 1051
MroXI	GAANNNNTTC	2 cut(s)	225, 1017
MseI	TTAA	4 cut(s)	294, 522, 936, 1132
MslI	CAYNNNNRTG	4 cut(s)	134, 381, 450, 505
MspI	CCGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	4 cut(s)	421, 663, 686, 911
NdeII	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
NlaIII	CATG	5 cut(s)	419, 510, 566, 881, 1057
NlaIV	GGNNCC	1 cut(s)	1090
NmuCI	GTSAC	3 cut(s)	166, 945, 1100
PaqCI	CACCTGC	1 cut(s)	435
PdmI	GAANNNNTTC	2 cut(s)	225, 1017
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	154, 1044
PleI	GAGTC	1 cut(s)	644
PpsI	GAGTC	1 cut(s)	644
Psp124BI	GAGCTC	1 cut(s)	633
PspFI	CCCAGC	1 cut(s)	910
PspN4I	GGNNCC	1 cut(s)	1090
PspPI	GGNCC	1 cut(s)	694
PstI	CTGCAG	1 cut(s)	195
PstNI	CAGNNNCTG	2 cut(s)	427, 710
PsuI	RGATCY	3 cut(s)	707, 836, 1088
RsaI	GTAC	3 cut(s)	12, 557, 716
RsaNI	GTAC	3 cut(s)	11, 556, 715
RseI	CAYNNNNRTG	4 cut(s)	134, 381, 450, 505
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	4 cut(s)	294, 522, 936, 1132
SatI	GCNGC	2 cut(s)	153, 1043
Sau3AI	GATC	6 cut(s)	85, 682, 707, 836, 1078, 1088
Sau96I	GGNCC	1 cut(s)	694
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	644
SduI	GDGCHC	5 cut(s)	265, 550, 633, 724, 927
SfaNI	GCATC	4 cut(s)	382, 484, 877, 1102
SfcI	CTRYAG	3 cut(s)	191, 490, 769
SinI	GGWCC	1 cut(s)	694
SmiMI	CAYNNNNRTG	4 cut(s)	134, 381, 450, 505
SmlI	CTYRAG	2 cut(s)	826, 917
SmoI	CTYRAG	2 cut(s)	826, 917
Sse9I	AATT	4 cut(s)	113, 266, 326, 582
SspMI	CTAG	3 cut(s)	431, 551, 834
SstI	GAGCTC	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	4 cut(s)	719, 773, 951, 1069
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	2 cut(s)	856, 885
TasI	AATT	4 cut(s)	113, 266, 326, 582
TatI	WGTACW	2 cut(s)	10, 555
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	4 cut(s)	294, 522, 936, 1132
Tru9I	TTAA	4 cut(s)	294, 522, 936, 1132
TscAI	CASTG	3 cut(s)	349, 724, 1114
TseFI	GTSAC	3 cut(s)	166, 945, 1100
TseI	GCWGC	2 cut(s)	152, 1042
Tsp45I	GTSAC	3 cut(s)	166, 945, 1100
TspDTI	ATGAA	4 cut(s)	17, 50, 297, 579
TspGWI	ACGGA	1 cut(s)	404
TspRI	CASTG	3 cut(s)	349, 724, 1114
VneI	GTGCAC	1 cut(s)	720
VpaK11BI	GGWCC	1 cut(s)	694
XapI	RAATTY	1 cut(s)	113
XbaI	TCTAGA	1 cut(s)	833
XmiI	GTMKAC	1 cut(s)	768
XmnI	GAANNNNTTC	2 cut(s)	225, 1017
XspI	CTAG	3 cut(s)	431, 551, 834
ZrmI	AGTACT	1 cut(s)	557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.