Rh2CG449500

strubbelig-receptor family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
61027647 .. 61035401
7755 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG449500.1

Sequence Viewer

Length: 1344 bp
ATGGTGGAGAGCTGGAGGTGGGTTTTGGTTGTGGTGAGCTTCTGCATTTGGGGATGGAGTCTCAGTTCAGTTAATGCTGATACAGATCCACTTGATGTTTCTGCTCTCACGGTGATGTATACTAGCTTAAATTCCCCACCTCAGCTAACCCAATGGAGTGCAAGTGGTAGTGATCCATGTGGCCAGTCTTGGAAAGGTGTTAAATGTTCGCGCTCACGAGTAACAGAAATTGATTTATCAGGTCTTGGACTTTCTGGAACATTTGGGTATAACCTTCAAAGCTTGACCGCGTTGACCAATCTAGACGTGAGCAATAATAATCTTGCAGGCGGTATACCTTATAACCTTCCTCCAAACGTGACACGATTAAACCTTGGCGCGAATCAATTCACACAAGGCATCCCTTATTCCGTCTCTACGATGACTTCTCTTAAATACTTAAACATCAGTCACAATCAGCTTCAGAATACACTGGATGATGTGTTTGGAAAGCTCTCTTCCCTTACCACATTGGATCTCTCTTTCAATTCCATGCCAGGTAGCCTCCCCGAGAGTTTTAGCTCCCTCTCAAGTCTAAAGACATTGGATTTGCAGAATAACCAGTTAACAGGGACTATTGATGTCCTAGCCAATCTCCCCCTCGAAAATCTGAATATCGAAAATAACCATTTCACCGGCTGGGTTCCAGAAACGTTGAAAGACATCGACCTGAAGAAGGATGGAAACACATGGAACTCAGGTCCTGCACCCCCACCACCACCTGGTACCCCTCCAGCCAGCAAGAACAATGGAAATCACACACCTGGCAGCAATGGTACACCATCAAAAAATGGTGCGAGTGACGGTGGTAAGAAATCGGGAATAGGAGCTGGTGGCATAGCAGGAATAGTGATATCAATTTTCGTTGTTACGGGGATTGTAGCATTCTTTCTCATAAAGAGAAGATCAAGGAGGTCATCTCCCGATATAGAAAAGATTGATAGTCAGCCCTTTGCGCCCCTTGCTTCACATGAAGTAAAAGAAATGAAGTCTGTACAAACCTCTGCCACATTGGATATGAAGACCTTTGATACTCCTGCCACGATAAATCTTAGACCCCCACCTGTTGATCGTCATAAATCATTTGATGATGAGGAATTCTCGAAGAAGCCCATTGTTGTGAAGAAAACCATCGCAGCTCCTATAAATGTGACCTCATATTCAATAGCAGACCTGCAGATGGCTACTGGAAGCTTTAGTGTTGAAAACCTTCTTGGTGAGGGGTCTTTTGGACGTGTTTATCGGGCTCAATTTGATGATGGGAAGGTATACTTCTTACCAATAGATTTATTTCCTGCCATTTGA

Protein Analysis

447

Amino Acids

48.1

Weight (kDa)

5.79

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 32 - 70 3.3e-09 Leucine rich repeat N-terminal domain
LRR_8 PF13855 118 - 177 5.3e-10 Leucine rich repeat
LRR_14 PF23598 138 - 212 3.3e-06 Leucine-rich repeat region
LRR_4 PF12799 167 - 211 9e-06 Leucine Rich repeats (2 copies)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0009297)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 1221
Acc65I GGTACC 1 cut(s) 764
AccB1I GGYRCC 1 cut(s) 764
AccB7I CCANNNNNTGG 1 cut(s) 761
AccI GTMKAC 3 cut(s) 119, 334, 1308
AccII CGCG 3 cut(s) 211, 290, 380
AciI CCGC 2 cut(s) 288, 330
AclI AACGTT 1 cut(s) 692
AclWI GGATC 3 cut(s) 80, 167, 522
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 130, 1136
AcuI CTGAAG 2 cut(s) 446, 731
AfaI GTAC 3 cut(s) 766, 817, 1035
AfiI CCNNNNNNNGG 3 cut(s) 715, 761, 1219
AflIII ACRYGT 1 cut(s) 1273
AgsI TTSAA 5 cut(s) 278, 526, 697, 1203, 1244
AjiI CACGTC 2 cut(s) 307, 1274
AjnI CCWGG 3 cut(s) 535, 760, 802
AjuI GAANNNNNNNTTGG 2 cut(s) 1236, 1268
AloI GAACNNNNNNTCC 2 cut(s) 49, 81
Alw26I GTCTC 2 cut(s) 65, 418
AlwI GGATC 3 cut(s) 80, 167, 522
AlwNI CAGNNNCTG 1 cut(s) 743
Ama87I CYCGRG 1 cut(s) 548
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 2 cut(s) 807, 1175
ApoI RAATTY 2 cut(s) 130, 1136
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
Asp700I GAANNNNTTC 2 cut(s) 386, 1248
Asp718I GGTACC 1 cut(s) 764
AspLEI GCGC 3 cut(s) 213, 380, 997
AspS9I GGNCC 1 cut(s) 740
AsuHPI GGTGA 4 cut(s) 46, 124, 664, 1268
AvaI CYCGRG 1 cut(s) 548
AvaII GGWCC 1 cut(s) 740
BalI TGGCCA 1 cut(s) 183
BanI GGYRCC 1 cut(s) 764
BanII GRGCYC 1 cut(s) 1288
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 1067
BbvCI CCTCAGC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 819, 1187
BccI CCATC 6 cut(s) 48, 713, 829, 1178, 1213, 1292
BciT130I CCWGG 3 cut(s) 537, 762, 804
BcoDI GTCTC 2 cut(s) 65, 418
BfaI CTAG 3 cut(s) 123, 302, 626
BfmI CTRYAG 1 cut(s) 1214
BfuAI ACCTGC 1 cut(s) 1221
BisI GCNGC 2 cut(s) 808, 1176
BlsI GCNGC 2 cut(s) 809, 1177
Bme1390I CCNGG 3 cut(s) 537, 762, 804
Bme18I GGWCC 1 cut(s) 740
BmeT110I CYCGRG 1 cut(s) 548
BmgBI CACGTC 2 cut(s) 307, 1274
BmgT120I GGNCC 1 cut(s) 740
BmiI GGNNCC 2 cut(s) 684, 766
BmrFI CCNGG 3 cut(s) 537, 762, 804
BmsI GCATC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 1067
BplI GAGNNNNNCTC 4 cut(s) 943, 975, 1124, 1156
BpmI CTGGAG 2 cut(s) 34, 756
Bpu10I CCTNAGC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 553
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 373
BsaXI ACNNNNNCTCC 4 cut(s) 49, 79, 148, 178
Bsc4I CCNNNNNNNGG 3 cut(s) 715, 761, 1219
Bse118I RCCGGY 1 cut(s) 674
Bse1I ACTGG 4 cut(s) 184, 477, 601, 1231
Bse3DI GCAATG 1 cut(s) 817
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 3 cut(s) 537, 762, 804
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 4 cut(s) 59, 399, 481, 724
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 3 cut(s) 715, 761, 1219
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 3 cut(s) 76, 155, 750
BseNI ACTGG 4 cut(s) 184, 477, 601, 1231
BseXI GCAGC 2 cut(s) 819, 1187
BseYI CCCAGC 1 cut(s) 678
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 3 cut(s) 211, 290, 380
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 764
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 625
BslI CCNNNNNNNGG 3 cut(s) 715, 761, 1219
BsmAI GTCTC 2 cut(s) 65, 418
BsmBI CGTCTC 1 cut(s) 418
BsmFI GGGAC 1 cut(s) 625
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 1 cut(s) 1288
Bsp1407I TGTACA 1 cut(s) 1033
Bsp143I GATC 5 cut(s) 85, 172, 514, 944, 1108
BspACI CCGC 2 cut(s) 288, 330
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 3 cut(s) 75, 154, 749
BspFNI CGCG 3 cut(s) 211, 290, 380
BspLI GGNNCC 2 cut(s) 684, 766
BspMAI CTGCAG 1 cut(s) 1218
BspMI ACCTGC 1 cut(s) 1221
BspPI GGATC 3 cut(s) 80, 167, 522
BspT107I GGYRCC 1 cut(s) 764
BsrDI GCAATG 1 cut(s) 817
BsrFI RCCGGY 1 cut(s) 674
BsrGI TGTACA 1 cut(s) 1033
BsrI ACTGG 4 cut(s) 184, 477, 601, 1231
BssAI RCCGGY 1 cut(s) 674
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 5 cut(s) 85, 172, 514, 944, 1108
BssNAI GTATAC 3 cut(s) 120, 335, 1309
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 373
Bst1107I GTATAC 3 cut(s) 120, 335, 1309
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 3 cut(s) 537, 762, 804
Bst4CI ACNGT 2 cut(s) 112, 845
Bst6I CTCTTC 1 cut(s) 502
BstAUI TGTACA 1 cut(s) 1033
BstC8I GCNNGC 2 cut(s) 328, 778
BstDEI CTNAG 4 cut(s) 62, 141, 736, 1091
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 4 cut(s) 59, 399, 481, 724
BstFNI CGCG 3 cut(s) 211, 290, 380
BstHHI GCGC 3 cut(s) 213, 380, 997
BstKTI GATC 5 cut(s) 88, 175, 517, 947, 1111
BstMAI GTCTC 2 cut(s) 65, 418
BstMBI GATC 5 cut(s) 85, 172, 514, 944, 1108
BstMWI GCNNNNNNNGC 2 cut(s) 994, 1001
BstNI CCWGG 3 cut(s) 537, 762, 804
BstSCI CCNGG 3 cut(s) 535, 760, 802
BstSFI CTRYAG 1 cut(s) 1214
BstUI CGCG 3 cut(s) 211, 290, 380
BstV1I GCAGC 2 cut(s) 819, 1187
BstV2I GAAGAC 1 cut(s) 1067
BstX2I RGATCY 2 cut(s) 85, 514
BstYI RGATCY 2 cut(s) 85, 514
BstZ17I GTATAC 3 cut(s) 120, 335, 1309
BsuRI GGCC 1 cut(s) 183
BtgZI GCGATG 1 cut(s) 1156
BtrI CACGTC 2 cut(s) 307, 1274
BtsCI GGATG 4 cut(s) 59, 399, 481, 724
BtsIMutI CAGTG 1 cut(s) 470
BveI ACCTGC 1 cut(s) 1221
Cac8I GCNNGC 2 cut(s) 328, 778
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 3 cut(s) 213, 380, 997
Cfr10I RCCGGY 1 cut(s) 674
Cfr13I GGNCC 1 cut(s) 740
CsiI ACCWGGT 1 cut(s) 760
Csp6I GTAC 3 cut(s) 765, 816, 1034
CviAII CATG 4 cut(s) 177, 532, 729, 1010
CviQI GTAC 3 cut(s) 765, 816, 1034
DdeI CTNAG 4 cut(s) 62, 141, 736, 1091
DpnI GATC 5 cut(s) 87, 174, 516, 946, 1110
DpnII GATC 5 cut(s) 85, 172, 514, 944, 1108
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 502
EarI CTCTTC 1 cut(s) 502
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 1288
Eco32I GATATC 1 cut(s) 894
Eco47I GGWCC 1 cut(s) 740
Eco57I CTGAAG 2 cut(s) 446, 731
Eco88I CYCGRG 1 cut(s) 548
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 740
EcoRI GAATTC 1 cut(s) 1136
EcoRII CCWGG 3 cut(s) 535, 760, 802
EcoRV GATATC 1 cut(s) 894
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 1288
ErhI CCWWGG 1 cut(s) 373
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 4 cut(s) 180, 535, 732, 1013
FalI AAGNNNNNCTT 2 cut(s) 1295, 1327
FaqI GGGAC 1 cut(s) 625
FatI CATG 4 cut(s) 176, 531, 728, 1009
FblI GTMKAC 3 cut(s) 119, 334, 1308
Fnu4HI GCNGC 2 cut(s) 808, 1176
FokI GGATG 4 cut(s) 66, 386, 488, 731
FriOI GRGCYC 1 cut(s) 1288
Fsp4HI GCNGC 2 cut(s) 808, 1176
FspBI CTAG 3 cut(s) 123, 302, 626
GlaI GCGC 3 cut(s) 212, 379, 996
GluI GCNGC 2 cut(s) 808, 1176
GsaI CCCAGC 1 cut(s) 682
GsuI CTGGAG 2 cut(s) 34, 756
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 675
HhaI GCGC 3 cut(s) 213, 380, 997
Hin1II CATG 4 cut(s) 180, 535, 732, 1013
Hin6I GCGC 3 cut(s) 211, 378, 995
HinP1I GCGC 3 cut(s) 211, 378, 995
HincII GTYRAC 2 cut(s) 294, 606
HindII GTYRAC 2 cut(s) 294, 606
HindIII AAGCTT 2 cut(s) 280, 1231
HinfI GANTC 2 cut(s) 58, 382
HpaI GTTAAC 1 cut(s) 606
HpaII CCGG 1 cut(s) 675
HphI GGTGA 4 cut(s) 46, 124, 664, 1268
Hpy166II GTNNAC 6 cut(s) 120, 294, 335, 606, 818, 1309
Hpy188I TCNGA 2 cut(s) 465, 651
Hpy188III TCNNGA 7 cut(s) 216, 255, 302, 686, 858, 962, 1141
Hpy8I GTNNAC 6 cut(s) 120, 294, 335, 606, 818, 1309
HpyAV CCTTC 5 cut(s) 284, 356, 709, 1259, 1297
HpyCH4III ACNGT 2 cut(s) 112, 845
HpyCH4IV ACGT 4 cut(s) 306, 357, 692, 1273
HpyCH4V TGCA 6 cut(s) 45, 161, 326, 592, 746, 1216
HpyF10VI GCNNNNNNNGC 2 cut(s) 994, 1001
HpyF3I CTNAG 4 cut(s) 62, 141, 736, 1091
HpySE526I ACGT 4 cut(s) 306, 357, 692, 1273
Hsp92II CATG 4 cut(s) 180, 535, 732, 1013
HspAI GCGC 3 cut(s) 211, 378, 995
KpnI GGTACC 1 cut(s) 768
KspAI GTTAAC 1 cut(s) 606
Kzo9I GATC 5 cut(s) 85, 172, 514, 944, 1108
LmnI GCTCC 3 cut(s) 566, 866, 1183
Lsp1109I GCAGC 2 cut(s) 819, 1187
LweI GCATC 1 cut(s) 408
MabI ACCWGGT 1 cut(s) 760
MaeI CTAG 3 cut(s) 123, 302, 626
MaeII ACGT 4 cut(s) 306, 357, 692, 1273
MaeIII GTNAC 6 cut(s) 220, 358, 449, 839, 907, 1189
MalI GATC 5 cut(s) 87, 174, 516, 946, 1110
MboI GATC 5 cut(s) 85, 172, 514, 944, 1108
MboII GAAGA 6 cut(s) 489, 724, 954, 1072, 1156, 1174
MflI RGATCY 2 cut(s) 85, 514
MhlI GDGCHC 1 cut(s) 1288
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 7 cut(s) 130, 228, 386, 526, 897, 1136, 1289
MluNI TGGCCA 1 cut(s) 183
MlyI GAGTC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 183
MroXI GAANNNNTTC 2 cut(s) 386, 1248
MscI TGGCCA 1 cut(s) 183
MseI TTAA 7 cut(s) 72, 128, 201, 368, 432, 440, 605
MslI CAYNNNNRTG 2 cut(s) 113, 1157
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 3 cut(s) 537, 762, 804
Mva1269I GAATGC 1 cut(s) 923
MvaI CCWGG 3 cut(s) 537, 762, 804
MvnI CGCG 3 cut(s) 211, 290, 380
MwoI GCNNNNNNNGC 2 cut(s) 994, 1001
NdeII GATC 5 cut(s) 85, 172, 514, 944, 1108
NlaIII CATG 4 cut(s) 180, 535, 732, 1013
NlaIV GGNNCC 2 cut(s) 684, 766
NmuCI GTSAC 4 cut(s) 358, 449, 839, 1189
PctI GAATGC 1 cut(s) 923
PdmI GAANNNNTTC 2 cut(s) 386, 1248
PfeI GAWTC 1 cut(s) 382
PflMI CCANNNNNTGG 1 cut(s) 761
PkrI GCNGC 2 cut(s) 809, 1177
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
PpuMI RGGWCCY 1 cut(s) 740
PsiI TTATAA 1 cut(s) 342
Psp1406I AACGTT 1 cut(s) 692
Psp5II RGGWCCY 1 cut(s) 740
Psp6I CCWGG 3 cut(s) 535, 760, 802
PspFI CCCAGC 1 cut(s) 678
PspGI CCWGG 3 cut(s) 535, 760, 802
PspN4I GGNNCC 2 cut(s) 684, 766
PspPI GGNCC 1 cut(s) 740
PspPPI RGGWCCY 1 cut(s) 740
PstI CTGCAG 1 cut(s) 1218
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 2 cut(s) 85, 514
RsaI GTAC 3 cut(s) 766, 817, 1035
RsaNI GTAC 3 cut(s) 765, 816, 1034
RseI CAYNNNNRTG 2 cut(s) 113, 1157
SaqAI TTAA 7 cut(s) 72, 128, 201, 368, 432, 440, 605
SatI GCNGC 2 cut(s) 808, 1176
Sau3AI GATC 5 cut(s) 85, 172, 514, 944, 1108
Sau96I GGNCC 1 cut(s) 740
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 3 cut(s) 537, 762, 804
SduI GDGCHC 1 cut(s) 1288
SexAI ACCWGGT 1 cut(s) 760
SfaNI GCATC 1 cut(s) 408
SfcI CTRYAG 1 cut(s) 1214
SinI GGWCC 1 cut(s) 740
SmiMI CAYNNNNRTG 2 cut(s) 113, 1157
SmlI CTYRAG 1 cut(s) 568
SmoI CTYRAG 1 cut(s) 568
Sse9I AATT 7 cut(s) 130, 228, 386, 526, 897, 1136, 1289
SsiI CCGC 2 cut(s) 288, 330
SspMI CTAG 3 cut(s) 123, 302, 626
StyD4I CCNGG 3 cut(s) 535, 760, 802
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 2 cut(s) 112, 845
TaiI ACGT 4 cut(s) 309, 360, 695, 1276
TaqI TCGA 4 cut(s) 642, 657, 705, 1142
TasI AATT 7 cut(s) 130, 228, 386, 526, 897, 1136, 1289
TatI WGTACW 1 cut(s) 1033
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 7 cut(s) 72, 128, 201, 368, 432, 440, 605
Tru9I TTAA 7 cut(s) 72, 128, 201, 368, 432, 440, 605
TscAI CASTG 1 cut(s) 477
TseFI GTSAC 4 cut(s) 358, 449, 839, 1189
TseI GCWGC 2 cut(s) 807, 1175
Tsp45I GTSAC 4 cut(s) 358, 449, 839, 1189
TspDTI ATGAA 3 cut(s) 1026, 1040, 1073
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 477
Van91I CCANNNNNTGG 1 cut(s) 761
VpaK11BI GGWCC 1 cut(s) 740
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 2 cut(s) 130, 1136
XbaI TCTAGA 1 cut(s) 301
XmiI GTMKAC 3 cut(s) 119, 334, 1308
XmnI GAANNNNTTC 2 cut(s) 386, 1248
XspI CTAG 3 cut(s) 123, 302, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.