Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0014409

Physical Location & Seq

Genomic Coordinates Reverse (-)

9594399 .. 9602270

Gene Structure 7872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAAATCGAAGCGTTGGAAGCAATACTTGCGGATGACTTCAAAGAAATACACTCAGGTGAGAGTGGGTTAAATACTTCCAAGAGGTGTTTTCAAATAAAAGTATCTCCAGTGGATGATGAATCAGATGAATTTACAACCACTCCAGTTCAGCTGGCTTTGATTTTCTCGCACACAGAAAGATACCCAGATGAGCCTCCACTTTTGAATTTGAATAGTTTACGCGGTATACAAGGAGAACATCTAAGAATTTTGAAAGAAAAGCTTCTGCAAGAGGCATCTGAAAACCTTGGTATGGCTATGATCGACACACTAGTTACATCAGCCAAGGAATGGCTTTCAGAACAATATTGTCAAGACACTAGTCTTGAGGATGCTGAAGCAGAAGAAGCAGCAAAGGATGATGTAATCATACCACATGGAGAACCAGTTACAGTTGAAACATTTCTGGCATGGAGAGAGATGTTTGAAGCAGAGATGGCACTGGAACGAGCCAAGTTAATGCCCGAGTCTGCACTCTCAGCACCCAAGGAAAAGAGGCTCACAGGTAGACAGTGGTTTGAAACCGGAAGGCATGCTGTGAAAGGTGCAGCTCCAGCCACTGAAGGGTCCGATGAAGAGGATGAGGACGAGATTGACTTCGATTCTGATGATTTTGAAGATGACGAAGATGATATGTTGGAACACTATTTGGCTGAGAAGTCCGACTCATCAACGCACTCTTCGAAGAGGGTCACTAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005844 GO:0006355 GO:0006357 GO:0006412 GO:0006518 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009725 GO:0009755 GO:0009889 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010469 GO:0010556 GO:0010646 GO:0010647 GO:0014070 GO:0019219 GO:0019222 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0030518 GO:0030521 GO:0030522 GO:0031323 GO:0031326 GO:0032502 GO:0032870 GO:0032991 GO:0033143 GO:0033145 GO:0033554 GO:0033574 GO:0033993 GO:0034599 GO:0034641 GO:0034645 GO:0042221 GO:0043043 GO:0043170 GO:0043401 GO:0043603 GO:0043604 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051090 GO:0051091 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0060765 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071383 GO:0071394 GO:0071396 GO:0071407 GO:0071495 GO:0071704 GO:0080090 GO:1901564 GO:1901566 GO:1901576 GO:1901654 GO:1901655 GO:1901700 GO:1901701 GO:1903506 GO:1990904 GO:2000112 GO:2000273 GO:2000823 GO:2000825 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RWD

Protein Analysis

248

Amino Acids

27.81

Weight (kDa)

4.3

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RWD	PF05773	1 - 113	3.1e-21	RWD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014409)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51730
fragaria_vesca	FvH4_6g32940
malus_domestica	MD09G1196300.v1.1 MD17G1177100.v1.1
prunus_persica	Prupe.3G052700_v2.0.a1
pyrus_communis	pycom09g11340 pycom17g18600
rosa_chinensis	RchiOBHm_Chr2g0142451
rosa_multiflora	Rmu_sc0001211.1_g000015 Rmu_sc0005700.1_g000001
rosa_roxburghii	Rroxscaffold_2G00102590
rosa_rugosa	Rorug02G0372900
rosa_samantha	Rh2AG424500 Rh2BG434200 Rh2CG411100 Rh2DG444200
rosa_wichuraiana	Rw2G034770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	333
AccI	GTMKAC	2 cut(s)	229, 550
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	32, 225
AcsI	RAATTY	3 cut(s)	131, 208, 249
AcuI	CTGAAG	2 cut(s)	399, 624
AfiI	CCNNNNNNNGG	3 cut(s)	295, 333, 606
AgsI	TTSAA	9 cut(s)	43, 95, 208, 214, 256, 440, 470, 563, 659
AhlI	ACTAGT	2 cut(s)	313, 362
AleI	CACNNNNGTG	1 cut(s)	57
AluBI	AGCT	3 cut(s)	154, 265, 593
AluI	AGCT	3 cut(s)	154, 265, 593
AlwNI	CAGNNNCTG	1 cut(s)	602
Ama87I	CYCGRG	1 cut(s)	506
ApeKI	GCWGC	2 cut(s)	392, 590
ApoI	RAATTY	3 cut(s)	131, 208, 249
Asp700I	GAANNNNTTC	2 cut(s)	264, 444
AspS9I	GGNCC	1 cut(s)	609
AsuHPI	GGTGA	1 cut(s)	71
AsuII	TTCGAA	1 cut(s)	725
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	1 cut(s)	609
BbvI	GCAGC	2 cut(s)	404, 602
BccI	CCATC	1 cut(s)	472
BcuI	ACTAGT	2 cut(s)	313, 362
BfaI	CTAG	3 cut(s)	314, 363, 742
BisI	GCNGC	2 cut(s)	393, 591
BlsI	GCNGC	2 cut(s)	394, 592
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	609
BmiI	GGNNCC	1 cut(s)	610
BmsI	GCATC	2 cut(s)	287, 364
BoxI	GACNNNNGTC	1 cut(s)	363
BpmI	CTGGAG	3 cut(s)	93, 129, 579
Bpu14I	TTCGAA	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	289, 327, 528
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 414, 444
Bsc4I	CCNNNNNNNGG	3 cut(s)	295, 333, 606
Bse1I	ACTGG	4 cut(s)	110, 146, 428, 489
BseDI	CCNNGG	3 cut(s)	289, 327, 528
BseGI	GGATG	5 cut(s)	40, 121, 379, 406, 628
BseLI	CCNNNNNNNGG	3 cut(s)	295, 333, 606
BseMII	CTCAG	3 cut(s)	69, 534, 687
BseNI	ACTGG	4 cut(s)	110, 146, 428, 489
BseXI	GCAGC	2 cut(s)	404, 602
BsgI	GTGCAG	2 cut(s)	498, 609
Bsh1236I	CGCG	1 cut(s)	225
BsiHKCI	CYCGRG	1 cut(s)	506
BsiSI	CCGG	1 cut(s)	567
BslI	CCNNNNNNNGG	3 cut(s)	295, 333, 606
BsoBI	CYCGRG	1 cut(s)	506
Bsp119I	TTCGAA	1 cut(s)	725
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	2 cut(s)	32, 225
BspCNI	CTCAG	3 cut(s)	68, 533, 688
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	610
BspT104I	TTCGAA	1 cut(s)	725
BsrI	ACTGG	4 cut(s)	110, 146, 428, 489
BssECI	CCNNGG	3 cut(s)	289, 327, 528
BssMI	GATC	1 cut(s)	303
BssNAI	GTATAC	1 cut(s)	230
BssT1I	CCWWGG	3 cut(s)	289, 327, 528
Bst1107I	GTATAC	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	436, 555
Bst6I	CTCTTC	3 cut(s)	612, 722, 727
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstBI	TTCGAA	1 cut(s)	725
BstC8I	GCNNGC	2 cut(s)	156, 576
BstDEI	CTNAG	4 cut(s)	55, 245, 520, 696
BstF5I	GGATG	5 cut(s)	40, 121, 379, 406, 628
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 29, 389, 479, 521, 596
BstNSI	RCATGY	1 cut(s)	578
BstPAI	GACNNNNGTC	1 cut(s)	363
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	404, 602
BstZ17I	GTATAC	1 cut(s)	230
BtsCI	GGATG	5 cut(s)	40, 121, 379, 406, 628
BtsIMutI	CAGTG	4 cut(s)	117, 482, 560, 600
Cac8I	GCNNGC	2 cut(s)	156, 576
CaiI	CAGNNNCTG	1 cut(s)	602
Cfr13I	GGNCC	1 cut(s)	609
CviAII	CATG	3 cut(s)	419, 453, 575
DdeI	CTNAG	4 cut(s)	55, 245, 520, 696
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	612, 722, 727
EarI	CTCTTC	3 cut(s)	612, 722, 727
Eco130I	CCWWGG	3 cut(s)	289, 327, 528
Eco47I	GGWCC	1 cut(s)	609
Eco57I	CTGAAG	2 cut(s)	399, 624
Eco88I	CYCGRG	1 cut(s)	506
EcoT14I	CCWWGG	3 cut(s)	289, 327, 528
ErhI	CCWWGG	3 cut(s)	289, 327, 528
FaeI	CATG	3 cut(s)	422, 456, 578
FaiI	YATR	8 cut(s)	230, 296, 302, 413, 420, 454, 576, 677
FalI	AAGNNNNNCTT	4 cut(s)	12, 44, 249, 281
FatI	CATG	3 cut(s)	418, 452, 574
FblI	GTMKAC	2 cut(s)	229, 550
Fnu4HI	GCNGC	2 cut(s)	393, 591
FokI	GGATG	5 cut(s)	47, 128, 386, 413, 635
Fsp4HI	GCNGC	2 cut(s)	393, 591
FspBI	CTAG	3 cut(s)	314, 363, 742
GluI	GCNGC	2 cut(s)	393, 591
GsuI	CTGGAG	3 cut(s)	93, 129, 579
HapII	CCGG	1 cut(s)	567
Hin1II	CATG	3 cut(s)	422, 456, 578
HindIII	AAGCTT	1 cut(s)	263
HinfI	GANTC	4 cut(s)	122, 509, 644, 707
HpaII	CCGG	1 cut(s)	567
HphI	GGTGA	1 cut(s)	71
Hpy166II	GTNNAC	3 cut(s)	221, 230, 551
Hpy188I	TCNGA	6 cut(s)	127, 283, 343, 613, 649, 706
Hpy188III	TCNNGA	2 cut(s)	356, 368
Hpy8I	GTNNAC	3 cut(s)	221, 230, 551
HpyAV	CCTTC	2 cut(s)	564, 599
HpyCH4III	ACNGT	2 cut(s)	436, 555
HpyCH4V	TGCA	3 cut(s)	271, 515, 590
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 29, 389, 479, 521, 596
HpyF3I	CTNAG	4 cut(s)	55, 245, 520, 696
Hsp92II	CATG	3 cut(s)	422, 456, 578
Kzo9I	GATC	1 cut(s)	303
LmnI	GCTCC	1 cut(s)	598
Lsp1109I	GCAGC	2 cut(s)	404, 602
LweI	GCATC	2 cut(s)	287, 364
MaeI	CTAG	3 cut(s)	314, 363, 742
MaeIII	GTNAC	3 cut(s)	316, 430, 733
MalI	GATC	1 cut(s)	305
MboI	GATC	1 cut(s)	303
MboII	GAAGA	6 cut(s)	398, 629, 671, 680, 714, 739
MluCI	AATT	3 cut(s)	131, 208, 249
MlyI	GAGTC	2 cut(s)	518, 701
MmeI	TCCRAC	2 cut(s)	660, 729
MnlI	CCTC	8 cut(s)	78, 207, 268, 364, 531, 613, 619, 723
MroXI	GAANNNNTTC	2 cut(s)	264, 444
MseI	TTAA	2 cut(s)	71, 500
MslI	CAYNNNNRTG	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	154
MspI	CCGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	6 cut(s)	20, 29, 389, 479, 521, 596
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	3 cut(s)	422, 456, 578
NlaIV	GGNNCC	1 cut(s)	610
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	1 cut(s)	578
NspV	TTCGAA	1 cut(s)	725
OliI	CACNNNNGTG	1 cut(s)	57
PaeI	GCATGC	1 cut(s)	578
PcsI	WCGNNNNNNNCGW	1 cut(s)	722
PdmI	GAANNNNTTC	2 cut(s)	264, 444
PfeI	GAWTC	2 cut(s)	122, 644
PflMI	CCANNNNNTGG	1 cut(s)	333
PkrI	GCNGC	2 cut(s)	394, 592
PleI	GAGTC	2 cut(s)	517, 701
PpsI	GAGTC	2 cut(s)	517, 701
PshAI	GACNNNNGTC	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	610
PspPI	GGNCC	1 cut(s)	609
PstNI	CAGNNNCTG	1 cut(s)	602
PvuII	CAGCTG	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	57
SaqAI	TTAA	2 cut(s)	71, 500
SatI	GCNGC	2 cut(s)	393, 591
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	609
SchI	GAGTC	2 cut(s)	518, 701
SetI	ASST	8 cut(s)	61, 89, 156, 267, 291, 550, 589, 595
SfaNI	GCATC	2 cut(s)	287, 364
SfuI	TTCGAA	1 cut(s)	725
SinI	GGWCC	1 cut(s)	609
SmiMI	CAYNNNNRTG	1 cut(s)	57
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
SpeI	ACTAGT	2 cut(s)	313, 362
SphI	GCATGC	1 cut(s)	578
Sse9I	AATT	3 cut(s)	131, 208, 249
SsiI	CCGC	2 cut(s)	32, 225
SspI	AATATT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	314, 363, 742
StyI	CCWWGG	3 cut(s)	289, 327, 528
TaaI	ACNGT	2 cut(s)	436, 555
TaqI	TCGA	4 cut(s)	9, 306, 642, 725
TasI	AATT	3 cut(s)	131, 208, 249
TfiI	GAWTC	2 cut(s)	122, 644
Tru1I	TTAA	2 cut(s)	71, 500
Tru9I	TTAA	2 cut(s)	71, 500
TscAI	CASTG	4 cut(s)	117, 489, 560, 607
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	2 cut(s)	392, 590
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	3 cut(s)	135, 144, 630
TspRI	CASTG	4 cut(s)	117, 489, 560, 607
Van91I	CCANNNNNTGG	1 cut(s)	333
VpaK11BI	GGWCC	1 cut(s)	609
XapI	RAATTY	3 cut(s)	131, 208, 249
XceI	RCATGY	1 cut(s)	578
XmiI	GTMKAC	2 cut(s)	229, 550
XmnI	GAANNNNTTC	2 cut(s)	264, 444
XspI	CTAG	3 cut(s)	314, 363, 742

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.