pycom09g19480

NPR1 interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018926
Physical Location & Seq
Forward (+)
20320234 .. 20320686
453 bp
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UTR
Exon/CDS
Intron
pycom09g19480.1

Sequence Viewer

Length: 453 bp
ATGGAAAATAAGAAGAAGATTGGAGCCGATGATCAGGTGGATATTAAGGTCTGGAAACATCAGGATGATCAGGTGGATGAAGAGAGCGAGGAGATGGAGATTGAGAAGTTTTATTCGTTGATTCGGAACTACCACGACGCTCGTAACCGTCTAAGATTTAGAAACGCAACACCGCCACCGCCGCAACAAGATCACAGTGATGGTCATGAAGTATTGTCGGAAAACAGCAAAAAGAGGAGAAAAACAATGAGCGAGGATGATGTTGATTCAGCAGGAGGAGGTAATTGGGTGCCAAGTTTTGAGGTGGGGGATTTTGCCAAAGAGGTGGAGTTTCGAGGACCTACGCCTTTACTGTTCCATTCTCTCTATTCTTGTAATGATACTGCTACTACTGCTGATAAAAAACAAGATGATGGAAACAACGAGTCTCTGGACTTGAAACTCACCCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NPR1_interact

Protein Analysis

151

Amino Acids

17.21

Weight (kDa)

4.86

Isoelectric Point (pI)

48.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NPR1_interact PF15699 26 - 147 1.2e-17 NPR1 interacting
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018926)

Species Orthologous Gene IDs
pyrus_communis pycom09g19480
rosa_chinensis RchiOBHm_Chr3g0486821
rosa_laevigata RLG00000023060
rosa_roxburghii Rroxscaffold_6G00395560
rosa_rugosa Rorug03G0227300
rosa_samantha Rh3AG277400 Rh3BG312400 Rh3CG311400 Rh3DG307900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 3 cut(s) 173, 179, 182
AgsI TTSAA 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 338
AsuHPI GGTGA 1 cut(s) 436
AvaII GGWCC 1 cut(s) 338
BanI GGYRCC 1 cut(s) 289
BccI CCATC 3 cut(s) 88, 194, 407
BclI TGATCA 2 cut(s) 31, 67
BcoDI GTCTC 1 cut(s) 432
BfmI CTRYAG 1 cut(s) 449
BisI GCNGC 1 cut(s) 182
BlsI GCNGC 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 338
BmgT120I GGNCC 1 cut(s) 338
BmiI GGNNCC 2 cut(s) 25, 291
BseGI GGATG 3 cut(s) 70, 82, 262
BseRI GAGGAG 3 cut(s) 104, 250, 291
BshNI GGYRCC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 432
Bsp143I GATC 3 cut(s) 31, 67, 190
BspACI CCGC 3 cut(s) 173, 179, 182
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 2 cut(s) 25, 291
BspT107I GGYRCC 1 cut(s) 289
BssMI GATC 3 cut(s) 31, 67, 190
Bst4CI ACNGT 3 cut(s) 149, 197, 354
Bst6I CTCTTC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 3 cut(s) 70, 82, 262
BstKTI GATC 3 cut(s) 34, 70, 193
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 3 cut(s) 31, 67, 190
BstMWI GCNNNNNNNGC 2 cut(s) 181, 392
BstSFI CTRYAG 1 cut(s) 449
BstXI CCANNNNNNTGG 1 cut(s) 325
BtsCI GGATG 3 cut(s) 70, 82, 262
BtsIMutI CAGTG 1 cut(s) 202
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 1 cut(s) 338
CseI GACGC 1 cut(s) 146
CviAII CATG 1 cut(s) 206
CviJI RGCY 1 cut(s) 26
CviKI_1 RGCY 1 cut(s) 26
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 33, 69, 192
DpnII GATC 3 cut(s) 31, 67, 190
Eam1104I CTCTTC 1 cut(s) 75
EarI CTCTTC 1 cut(s) 75
Eco47I GGWCC 1 cut(s) 338
EcoO109I RGGNCCY 1 cut(s) 338
FaeI CATG 1 cut(s) 209
FaiI YATR 1 cut(s) 207
FatI CATG 1 cut(s) 205
FbaI TGATCA 2 cut(s) 31, 67
Fnu4HI GCNGC 1 cut(s) 182
FokI GGATG 3 cut(s) 77, 89, 269
Fsp4HI GCNGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 182
HgaI GACGC 1 cut(s) 146
Hin1II CATG 1 cut(s) 209
HinfI GANTC 3 cut(s) 121, 266, 425
HphI GGTGA 1 cut(s) 436
Hpy188I TCNGA 2 cut(s) 126, 220
Hpy188III TCNNGA 4 cut(s) 52, 62, 206, 431
Hpy99I CGWCG 1 cut(s) 140
HpyCH4III ACNGT 3 cut(s) 149, 197, 354
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 392
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 1 cut(s) 209
Ksp22I TGATCA 2 cut(s) 31, 67
Kzo9I GATC 3 cut(s) 31, 67, 190
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 6 cut(s) 20, 37, 47, 56, 258, 416
MaeIII GTNAC 1 cut(s) 143
MalI GATC 3 cut(s) 33, 69, 192
MboI GATC 3 cut(s) 31, 67, 190
MboII GAAGA 3 cut(s) 25, 28, 92
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 434
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 8 cut(s) 82, 228, 247, 269, 272, 295, 316, 329
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 63, 198
MwoI GCNNNNNNNGC 2 cut(s) 181, 392
NdeII GATC 3 cut(s) 31, 67, 190
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 2 cut(s) 25, 291
PagI TCATGA 1 cut(s) 205
PfeI GAWTC 2 cut(s) 121, 266
PkrI GCNGC 1 cut(s) 183
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
PpuMI RGGWCCY 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 338
PspN4I GGNNCC 2 cut(s) 25, 291
PspPI GGNCC 1 cut(s) 338
PspPPI RGGWCCY 1 cut(s) 338
RseI CAYNNNNRTG 2 cut(s) 63, 198
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 182
Sau3AI GATC 3 cut(s) 31, 67, 190
Sau96I GGNCC 1 cut(s) 338
SchI GAGTC 1 cut(s) 434
SetI ASST 7 cut(s) 39, 51, 75, 283, 306, 327, 343
SfcI CTRYAG 1 cut(s) 449
SinI GGWCC 1 cut(s) 338
SmiMI CAYNNNNRTG 2 cut(s) 63, 198
Sse9I AATT 1 cut(s) 283
SsiI CCGC 3 cut(s) 173, 179, 182
TaaI ACNGT 3 cut(s) 149, 197, 354
TaqI TCGA 1 cut(s) 334
TasI AATT 1 cut(s) 283
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 2 cut(s) 121, 266
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 202
TspDTI ATGAA 2 cut(s) 93, 222
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.